NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr15_81334720-81334975) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
GATK4_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr15_81334720-81334975)

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Task Info

Status: succeeded
Hash: a686829e4a4c
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr15_81334720-81334975
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: c6/b86b58
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/b86b5882fb53ec8c994f5af96ac5c3
Native ID: nf-c6b86b5882fb53ec8c994f5af96ac5c3-a4940

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.3 / 6
Memory (peak / alloc): 1.4 GB / 36.0 GB
Process I/O (rchar / wchar): 2.7 GB / 1.2 MB
Disk I/O (read / write): 280.0 MB / 1.2 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:50 AM
Completed: Jan 26, 2026 4:41:54 AM
Total Duration: 7m 3s

Phases

Queue: 3s
Execution: 5m 51s
Stage/Unstage: 1m 9s

Attempt 2

Execution

Status: succeeded - cached
Hash: c7/080c15
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/080c150da65fd6ca8a5d35c3b354c8
Native ID: nf-c7080c150da65fd6ca8a5d35c3b354c8-0cc46

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.3 / 6
Memory (peak / alloc): 985.7 MB / 36.0 GB
Process I/O (rchar / wchar): 1.1 GB / 1.1 MB
Disk I/O (read / write): - / 1.1 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:02:47 AM
Completed: Jan 26, 2026 12:06:53 AM
Total Duration: 4m 5s

Phases

Queue: 1m 24s
Execution: 1m 27s
Stage/Unstage: 1m 14s

Attempt 1

Execution

Status: succeeded
Hash: 5b/aed85d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/aed85dbdd059709b5164521351999e
Native ID: nf-5baed85dbdd059709b5164521351999e-9facd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.3 / 6
Memory (peak / alloc): 987.0 MB / 36.0 GB
Process I/O (rchar / wchar): 1.1 GB / 1.1 MB
Disk I/O (read / write): - / 1.1 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 10:36:34 PM
Completed: Jan 25, 2026 10:40:30 PM
Total Duration: 3m 55s

Phases

Queue: 1m 26s
Execution: 1m 22s
Stage/Unstage: 1m 7s