NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
SAMTOOLS_STATS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: b23014f213a0
Process: NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 4

Attempt 4

Execution

Status: succeeded - cached
Hash: 52/b9242d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/b9242d6b58c0e5d5d11ff6f618c417
Native ID: nf-52b9242d6b58c0e5d5d11ff6f618c417-b6f7c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 2
Memory (peak / alloc): 9.6 MB / 4.0 GB
Process I/O (rchar / wchar): 24.5 GB / 168.1 KB
Disk I/O (read / write): 24.5 GB / 168.0 KB
Host: i-0eff1d0e587ece5c8 ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:02:44 AM
Completed: Jan 26, 2026 12:09:33 AM
Total Duration: 6m 48s

Phases

Queue: 5s
Execution: 5m 21s
Stage/Unstage: 1m 22s

Attempt 3

Execution

Status: succeeded
Hash: ed/9b0e76
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/9b0e76540821d26f1c1a67c28fc670
Native ID: nf-ed9b0e76540821d26f1c1a67c28fc670-a5a8f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 9.3 MB / 4.0 GB
Process I/O (rchar / wchar): 129.1 GB / 172.6 KB
Disk I/O (read / write): 129.1 GB / 172.0 KB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:17 AM
Completed: Jan 26, 2026 2:57:51 AM
Total Duration: 32m 33s

Phases

Queue: 1m 24s
Execution: 25m 32s
Stage/Unstage: 5m 37s

Attempt 2

Execution

Status: aborted
Hash: bd/a972e7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/a972e7e3b352dc237de42783319bc3
Native ID: nf-bda972e7e3b352dc237de42783319bc3-c6641

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:54 AM
Completed: Jan 26, 2026 1:14:26 AM
Total Duration: -

Phases

Queue: 9s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: aborted
Hash: b6/f52ab7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/f52ab76e0a4e4e3ae0176f1e0c4276
Native ID: nf-b6f52ab76e0a4e4e3ae0176f1e0c4276-d1df7

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:23 PM
Completed: Jan 25, 2026 11:41:03 PM
Total Duration: -

Phases

Queue: 9s
Execution: -
Stage/Unstage: -