NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_MUTECT2 (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
WHATSHAP_MUTECT2 (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: b39f22c44981
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_MUTECT2
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 5b/9e3dbb
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/whatshap:2.8--py39h2de1943_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/9e3dbb7da822e5c9b2264ff085d9ab
Native ID: nf-5b9e3dbb7da822e5c9b2264ff085d9ab-6da01

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 6
Memory (peak / alloc): 1.7 GB / 36.0 GB
Process I/O (rchar / wchar): 135.0 GB / 1.5 MB
Disk I/O (read / write): 132.0 GB / 1.5 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 6:00:34 AM
Completed: Jan 26, 2026 7:57:47 AM
Total Duration: 1h 57m

Phases

Queue: 7s
Execution: 1h 51m
Stage/Unstage: 5m 38s

Attempt 1

Execution

Status: succeeded
Hash: 02/e03f76
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/whatshap:2.8--py39h2de1943_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/e03f769a07db0fea91a8660c5c78eb
Native ID: nf-02e03f769a07db0fea91a8660c5c78eb-255ac

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 6
Memory (peak / alloc): 1.7 GB / 36.0 GB
Process I/O (rchar / wchar): 135.0 GB / 1.5 MB
Disk I/O (read / write): 132.2 GB / 1.5 MB
Host: i-00fb8408a6c37d92b ( on-demand)

Runtime

Submitted: Jan 26, 2026 5:50:28 AM
Completed: Jan 26, 2026 7:45:32 AM
Total Duration: 1h 55m

Phases

Queue: 7s
Execution: 1h 49m
Stage/Unstage: 4m 58s