NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr11_63291540-63291643) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
GATK4_HAPLOTYPECALLER (1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr11_63291540-63291643)

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Task Info

Status: succeeded
Hash: bf2ac869a02f
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_HAPLOTYPECALLER:GATK4_HAPLOTYPECALLER
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr11_63291540-63291643
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: 00/09b703
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/09b703c77ede9c971aac784eb35687
Native ID: nf-0009b703c77ede9c971aac784eb35687-43819

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.3 / 6
Memory (peak / alloc): 1.2 GB / 36.0 GB
Process I/O (rchar / wchar): 2.6 GB / 1.2 MB
Disk I/O (read / write): 385.4 MB / 1.2 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:50 AM
Completed: Jan 26, 2026 4:41:54 AM
Total Duration: 7m 3s

Phases

Queue: 3s
Execution: 5m 51s
Stage/Unstage: 1m 9s

Attempt 2

Execution

Status: succeeded - cached
Hash: fb/28262c
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/28262ce5b6b296a80267b42e253adc
Native ID: nf-fb28262ce5b6b296a80267b42e253adc-636ba

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 6
Memory (peak / alloc): 2.0 GB / 36.0 GB
Process I/O (rchar / wchar): 9.3 GB / 1.6 MB
Disk I/O (read / write): - / 1.6 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:02:47 AM
Completed: Jan 26, 2026 12:23:55 AM
Total Duration: 21m 7s

Phases

Queue: 1m 24s
Execution: 18m 35s
Stage/Unstage: 1m 8s

Attempt 1

Execution

Status: succeeded
Hash: 59/f0423a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/f0423a69588b73e51652993cff72ed
Native ID: nf-59f0423a69588b73e51652993cff72ed-595c2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 6
Memory (peak / alloc): 1.4 GB / 36.0 GB
Process I/O (rchar / wchar): 9.3 GB / 1.6 MB
Disk I/O (read / write): - / 1.6 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 10:36:34 PM
Completed: Jan 25, 2026 10:57:47 PM
Total Duration: 21m 12s

Phases

Queue: 1m 26s
Execution: 18m 36s
Stage/Unstage: 1m 10s