NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr6_29306690-29307655) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr6_29306690-29307655)

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Task Info

Status: succeeded
Hash: cf8def0fbe2b
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr6_29306690-29307655
Attempts: 6

Attempt 6

Execution

Status: succeeded
Hash: 6a/a4c3b4
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/a4c3b44c5d916419b32554fe489548
Native ID: nf-6aa4c3b44c5d916419b32554fe489548-11786

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 6
Memory (peak / alloc): 5.4 GB / 36.0 GB
Process I/O (rchar / wchar): 12.8 GB / 21.8 MB
Disk I/O (read / write): 2.3 GB / 21.8 MB
Host: i-0ae3e5fe742aad69f ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:56 AM
Completed: Jan 26, 2026 5:24:40 AM
Total Duration: 49m 43s

Phases

Queue: 1m 36s
Execution: 42m 34s
Stage/Unstage: 5m 33s

Attempt 5

Execution

Status: succeeded
Hash: c7/bc606e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/bc606e13b242052bc83bf804432e26
Native ID: nf-c7bc606e13b242052bc83bf804432e26-4d32c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 6
Memory (peak / alloc): 4.2 GB / 36.0 GB
Process I/O (rchar / wchar): 56.1 GB / 79.2 MB
Disk I/O (read / write): 53.1 GB / 79.1 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:20 AM
Completed: Jan 26, 2026 5:47:52 AM
Total Duration: 3h 22m

Phases

Queue: 1m 28s
Execution: 3h 15m
Stage/Unstage: 5m 14s

Attempt 4

Execution

Status: aborted
Hash: be/051e68
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/051e68bb362ce35798c1bb83463b23
Native ID: nf-be051e68bb362ce35798c1bb83463b23-0721f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09ac7814b40862fcb ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:58 AM
Completed: Jan 26, 2026 1:14:28 AM
Total Duration: -

Phases

Queue: 1m 6s
Execution: -
Stage/Unstage: -

Attempt 3

Execution

Status: aborted
Hash: 97/6a0504
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/6a050410fc13a4ba587f2173b73028
Native ID: nf-976a050410fc13a4ba587f2173b73028-eeea2

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00e15b575a975497d ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:36:33 PM
Completed: Jan 25, 2026 11:41:06 PM
Total Duration: -

Phases

Queue: 9s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: failed
Hash: f0/ba9463
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/ba9463a64fa416eafd66331effc84e
Native ID: nf-f0ba9463a64fa416eafd66331effc84e-067f5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00e15b575a975497d ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:31:33 PM
Completed: Jan 25, 2026 11:36:29 PM
Total Duration: 4m 55s

Phases

Queue: 2s
Execution: 4m 53s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: a4/75abba
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/75abba5ef2e52177f40755fd51855b
Native ID: nf-a475abba5ef2e52177f40755fd51855b-f9689

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-00e15b575a975497d ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:26 PM
Completed: Jan 25, 2026 11:31:26 PM
Total Duration: 5m 59s

Phases

Queue: 59s
Execution: 5m 0s
Stage/Unstage: 0s