NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
CRAM_TO_BAM_RECAL (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: e069ef778737
Process: NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 4

Attempt 4

Execution

Status: succeeded - cached
Hash: 50/6552b5
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/6552b5cb97190e712667798fa76484
Native ID: nf-506552b5cb97190e712667798fa76484-144a0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 2
Memory (peak / alloc): 807.4 MB / 12.0 GB
Process I/O (rchar / wchar): 47.1 GB / 16.6 GB
Disk I/O (read / write): 46.5 GB / 16.6 GB
Host: i-0eff1d0e587ece5c8 ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:02:45 AM
Completed: Jan 26, 2026 12:18:14 AM
Total Duration: 15m 28s

Phases

Queue: 4s
Execution: 13m 4s
Stage/Unstage: 2m 20s

Attempt 3

Execution

Status: succeeded
Hash: 03/7832b4
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/7832b4169294f9a2c7d9945f0163e8
Native ID: nf-037832b4169294f9a2c7d9945f0163e8-5c58e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.1 / 2
Memory (peak / alloc): 779.5 MB / 12.0 GB
Process I/O (rchar / wchar): 217.2 GB / 82.2 GB
Disk I/O (read / write): 217.2 GB / 82.2 GB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:18 AM
Completed: Jan 26, 2026 3:33:56 AM
Total Duration: 1h 8m

Phases

Queue: 1m 21s
Execution: 56m 17s
Stage/Unstage: 10m 59s

Attempt 2

Execution

Status: aborted
Hash: 79/cd13c9
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/cd13c9044fb6e3bb39abcee5ae4518
Native ID: nf-79cd13c9044fb6e3bb39abcee5ae4518-9d10c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:55 AM
Completed: Jan 26, 2026 1:14:26 AM
Total Duration: -

Phases

Queue: 9s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: aborted
Hash: cf/d12a72
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/d12a722e99418a4a1865b85ea31a64
Native ID: nf-cfd12a722e99418a4a1865b85ea31a64-0bb40

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:23 PM
Completed: Jan 25, 2026 11:41:04 PM
Total Duration: -

Phases

Queue: 9s
Execution: -
Stage/Unstage: -