NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
CNVKIT_BATCH (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: e74bf0e08a53
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 3

Attempt 3

Execution

Status: succeeded - cached
Hash: e8/6033af
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/6033afe4bf249041114b87647c9538
Native ID: nf-e86033afe4bf249041114b87647c9538-35537

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.9 / 12
Memory (peak / alloc): 5.5 GB / 36.0 GB
Process I/O (rchar / wchar): 1.3 TB / 138.7 MB
Disk I/O (read / write): 353.6 GB / 111.1 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:18 AM
Completed: Jan 26, 2026 3:05:45 AM
Total Duration: 40m 26s

Phases

Queue: 1m 36s
Execution: 33m 52s
Stage/Unstage: 4m 58s

Attempt 2

Execution

Status: aborted
Hash: b4/7d100a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/7d100ab53ff8ebc957b52440563f13
Native ID: nf-b47d100ab53ff8ebc957b52440563f13-a9eca

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 12
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:55 AM
Completed: Jan 26, 2026 1:14:26 AM
Total Duration: -

Phases

Queue: 8s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: aborted
Hash: ce/5001bb
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/5001bbfc65d673f6a58ee0447f377a
Native ID: nf-ce5001bbfc65d673f6a58ee0447f377a-ac1af

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 12
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:24 PM
Completed: Jan 25, 2026 11:41:04 PM
Total Duration: -

Phases

Queue: 28s
Execution: -
Stage/Unstage: -