NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
MERGE_SENTIEON_HAPLOTYPER_VCFS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: ed518ef85dc3
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: 4f/d6175d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/d6175d3400253045374e1f00ea5f90
Native ID: nf-4fd6175d3400253045374e1f00ea5f90-f3eb5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.5 / 2
Memory (peak / alloc): 485.2 MB / 4.0 GB
Process I/O (rchar / wchar): 100.7 MB / 2.4 MB
Disk I/O (read / write): - / 2.4 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:39:20 AM
Completed: Jan 26, 2026 4:39:29 AM
Total Duration: 8s

Phases

Queue: 2s
Execution: 4s
Stage/Unstage: 2s

Attempt 2

Execution

Status: succeeded - cached
Hash: 2a/b00fe5
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/b00fe54769428130e57b74c8e86e03
Native ID: nf-2ab00fe54769428130e57b74c8e86e03-50fb8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.9 / 2
Memory (peak / alloc): 220.4 MB / 4.0 GB
Process I/O (rchar / wchar): 100.3 MB / 2.4 MB
Disk I/O (read / write): - / 2.4 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:57 AM
Completed: Jan 26, 2026 12:53:06 AM
Total Duration: 8s

Phases

Queue: 3s
Execution: 3s
Stage/Unstage: 2s

Attempt 1

Execution

Status: aborted
Hash: 89/03e48a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/03e48a5345204a56986dbb58d6efbc
Native ID: nf-8903e48a5345204a56986dbb58d6efbc-e3c69

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 4.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:25 PM
Completed: Jan 25, 2026 11:41:09 PM
Total Duration: -

Phases

Queue: 8s
Execution: -
Stage/Unstage: -