NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
CNNSCOREVARIANTS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)

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Task Info

Status: succeeded
Hash: eedf37eb4785
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS
Tag: 1029_BGFD-N1-BDNA-1_2375WFLT3_s30
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: ec/359fa0
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/nf-core/gatk:4.5.0.0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/359fa0504b0141cf0ad4c4a7ab6dcb
Native ID: nf-ec359fa0504b0141cf0ad4c4a7ab6dcb-b6a6a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 10.8 / 2
Memory (peak / alloc): 2.7 GB / 12.0 GB
Process I/O (rchar / wchar): 2.0 GB / 29.0 MB
Disk I/O (read / write): - / 22.7 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:39:30 AM
Completed: Jan 26, 2026 4:40:31 AM
Total Duration: 1m 0s

Phases

Queue: 31s
Execution: 20s
Stage/Unstage: 8s

Attempt 2

Execution

Status: succeeded - cached
Hash: d6/37cee4
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/nf-core/gatk:4.5.0.0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/37cee440289abf8f1053b210a43c85
Native ID: nf-d637cee440289abf8f1053b210a43c85-f2e41

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 10.7 / 2
Memory (peak / alloc): 2.2 GB / 12.0 GB
Process I/O (rchar / wchar): 2.0 GB / 29.0 MB
Disk I/O (read / write): - / 23.5 MB
Host: i-0740e0d1341dc4d7a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:53:15 AM
Completed: Jan 26, 2026 12:54:00 AM
Total Duration: 44s

Phases

Queue: 4s
Execution: 23s
Stage/Unstage: 16s

Attempt 1

Execution

Status: succeeded
Hash: c2/baa9e7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/nf-core/gatk:4.5.0.0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/baa9e73dc57d0633f0ed9948dd579f
Native ID: nf-c2baa9e73dc57d0633f0ed9948dd579f-101d4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 10.8 / 2
Memory (peak / alloc): 2.3 GB / 12.0 GB
Process I/O (rchar / wchar): 2.0 GB / 29.0 MB
Disk I/O (read / write): - / 22.8 MB
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:43 PM
Completed: Jan 25, 2026 11:26:32 PM
Total Duration: 48s

Phases

Queue: 6s
Execution: 22s
Stage/Unstage: 19s