NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr1_69091-70008) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
MUTECT2_PAIRED (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr1_69091-70008)

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Task Info

Status: succeeded
Hash: ef8534311235
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30;chr1_69091-70008
Attempts: 6

Attempt 6

Execution

Status: succeeded
Hash: d0/1c6485
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/1c64853d46cb9cfbdd7d19d20808c0
Native ID: nf-d01c64853d46cb9cfbdd7d19d20808c0-e5d8a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 6
Memory (peak / alloc): 4.1 GB / 36.0 GB
Process I/O (rchar / wchar): 11.9 GB / 17.9 MB
Disk I/O (read / write): 11.3 GB / 17.9 MB
Host: i-031ce6bb5e3b37abd ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:34:55 AM
Completed: Jan 26, 2026 5:17:58 AM
Total Duration: 43m 2s

Phases

Queue: 1m 29s
Execution: 36m 33s
Stage/Unstage: 5m 0s

Attempt 5

Execution

Status: succeeded
Hash: a2/5258ae
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/5258ae9e33784cf0e45d7699ab44e5
Native ID: nf-a25258ae9e33784cf0e45d7699ab44e5-4c905

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 6
Memory (peak / alloc): 3.4 GB / 36.0 GB
Process I/O (rchar / wchar): 54.1 GB / 74.9 MB
Disk I/O (read / write): 50.6 GB / 74.9 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:25:19 AM
Completed: Jan 26, 2026 5:27:19 AM
Total Duration: 3h 1m

Phases

Queue: 1m 29s
Execution: 2h 55m
Stage/Unstage: 5m 30s

Attempt 4

Execution

Status: aborted
Hash: b0/0e8b21
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/0e8b211d21dceff4d62e40e0be31e7
Native ID: nf-b00e8b211d21dceff4d62e40e0be31e7-a7132

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09ac7814b40862fcb ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:52:58 AM
Completed: Jan 26, 2026 1:14:28 AM
Total Duration: -

Phases

Queue: 1m 6s
Execution: -
Stage/Unstage: -

Attempt 3

Execution

Status: failed
Hash: ca/81f7bc
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/81f7bc841b1dbfcd77b5b7ce767a1e
Native ID: nf-ca81f7bc841b1dbfcd77b5b7ce767a1e-948fb

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:36:03 PM
Completed: Jan 25, 2026 11:40:57 PM
Total Duration: 4m 53s

Phases

Queue: 4s
Execution: 4m 49s
Stage/Unstage: 0s

Attempt 2

Execution

Status: failed
Hash: f5/8621eb
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/8621ebe0ab95d1b0f8961c9afb1324
Native ID: nf-f58621ebe0ab95d1b0f8961c9afb1324-b0007

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:31:03 PM
Completed: Jan 25, 2026 11:35:58 PM
Total Duration: 4m 54s

Phases

Queue: 3s
Execution: 4m 51s
Stage/Unstage: 0s

Attempt 1

Execution

Status: failed
Hash: 47/352250
Exit Code: 2
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/352250a008a95779b2a40a6f74ec36
Native ID: nf-47352250a008a95779b2a40a6f74ec36-dd128

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-09a809f6ffd52dd5b ( on-demand)

Runtime

Submitted: Jan 25, 2026 11:25:25 PM
Completed: Jan 25, 2026 11:30:59 PM
Total Duration: 5m 33s

Phases

Queue: 4s
Execution: 5m 29s
Stage/Unstage: 0s