NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30) - sarek-1029_BGFD-speedups2-1 - Workflow Tracker

Runs
sarek-1029_B..speedups2-1
Tasks
GATHERPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30)

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Task Info

Status: succeeded
Hash: f2223032be01
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR
Tag: 1029_BGFD-T1-TDNA-1_23FC2GLT4_s30
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 84/aa9616
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/aa9616811368b405a9ea7f8b4e0f1a
Native ID: nf-84aa9616811368b405a9ea7f8b4e0f1a-c5eba

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.9 / 6
Memory (peak / alloc): 326.8 MB / 36.0 GB
Process I/O (rchar / wchar): 108.0 MB / 2.3 MB
Disk I/O (read / write): - / 2.3 MB
Host: i-043fd5880641b4430 ( on-demand)

Runtime

Submitted: Jan 26, 2026 4:49:08 AM
Completed: Jan 26, 2026 4:49:17 AM
Total Duration: 8s

Phases

Queue: 2s
Execution: 3s
Stage/Unstage: 3s

Attempt 1

Execution

Status: succeeded
Hash: 61/356516
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/356516a352cd9828ff3b918d9fd7a3
Native ID: nf-61356516a352cd9828ff3b918d9fd7a3-be81c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.0 / 6
Memory (peak / alloc): 294.2 MB / 36.0 GB
Process I/O (rchar / wchar): 104.3 MB / 2.3 MB
Disk I/O (read / write): - / 2.3 MB
Host: i-005c1019dde196faf ( on-demand)

Runtime

Submitted: Jan 26, 2026 2:57:54 AM
Completed: Jan 26, 2026 2:58:03 AM
Total Duration: 8s

Phases

Queue: 3s
Execution: 3s
Stage/Unstage: 2s