succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 3m 37s 1m 2s 2m 17s 18s 386.8 MB 102% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38) 3m 1s 1m 3s 1m 47s 11s 444.6 MB 103% 3.0 GB 79.7 MB 0 bytes 81.2 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 45s 43s - - 10.9 MB 98% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 52s 46s 2s 4s 11.0 MB 101% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 45s 43s - - 10.8 MB 91% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 48s 41s 2s 5s 10.9 MB 102% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 50s 46s - - 5.4 MB 99% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 47s 45s - - 6.2 MB 101% 6.0 MB 1.7 MB 0 bytes 1.8 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 2m 35s 2m 34s - - 5.9 MB 96% 2.0 MB 535.5 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 2m 34s 2m 33s - - 6.0 MB 92% 2.1 MB 595.2 KB 0 bytes 608.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 2m 37s 2m 36s - - 3.3 MB 69% 352.4 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 2m 34s 2m 33s - - 6.0 MB 97% 2.0 MB 566.8 KB 0 bytes 580.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 1m 5s 55s 8s 2s 256.9 MB 368% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 14s 3s 55s 16s 273.8 MB 136% 5.9 GB 10.5 MB 0 bytes 10.6 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 3s 1m 1s 0s 1s 0 bytes 105% 75.5 KB 783 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 18s 16s 0s 1s 16.6 MB 101% 2.7 MB 5.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30) 13m 36s 3s 13m 30s 2s 109.2 MB 104% 271.3 MB 1006 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) 2m 27s 1m 5s 39s 42s 818.1 MB 134% 3.8 GB 54.9 MB 0 bytes 54.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30) 5m 29s 3s 2m 53s 2m 32s 858.4 MB 110% 13.3 GB 193.0 MB 0 bytes 193.2 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BGFD-N1-BDNA-1_2375WFLT3_s30) 14m 42s 1m 7s 13m 1s 34s 1.2 GB 183% 126.3 GB 77.2 MB 0 bytes 66.7 MB 1
269 items found |
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