|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
1m 53s |
3s |
1m 20s |
30s |
8.0 MB |
100% |
15.8 GB |
162.1 KB |
15.8 GB |
168.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
7s |
6s |
- |
- |
9.5 MB |
124% |
1.6 MB |
151.8 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
7s |
5s |
- |
- |
3.2 MB |
101% |
117.8 KB |
7.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
29s |
28s |
- |
- |
3.2 MB |
62% |
148.1 KB |
12.7 KB |
0 bytes |
16.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
2s |
- |
- |
9.7 MB |
113% |
949.1 KB |
144.9 KB |
0 bytes |
148.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
- |
- |
9.8 MB |
112% |
1.5 MB |
151.2 KB |
0 bytes |
156.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
36s |
2s |
24s |
9s |
2.3 GB |
997% |
2.0 GB |
29.0 MB |
0 bytes |
22.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
2m 50s |
2s |
2m 20s |
28s |
1.2 GB |
117% |
2.0 GB |
2.5 MB |
0 bytes |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
1h 15m |
1m 5s |
1h 11m |
3m 0s |
1.2 GB |
160% |
681.0 GB |
123.5 MB |
178.1 GB |
106.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
16s |
11s |
3s |
2s |
129.3 MB |
690% |
75.3 MB |
101.3 KB |
0 bytes |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
6s |
2s |
3s |
1s |
135.7 MB |
919% |
75.3 MB |
93.9 KB |
0 bytes |
108.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
18s |
11s |
5s |
2s |
243.4 MB |
571% |
85.6 MB |
67.8 KB |
0 bytes |
84.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_ASCAT:ASCAT (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
10m 25s |
2m 46s |
4m 56s |
2m 43s |
3.7 GB |
439% |
78.8 GB |
117.0 MB |
62.5 GB |
117.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CNV_FACETS (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
35m 47s |
1m 28s |
31m 11s |
3m 7s |
4.4 GB |
168% |
497.0 GB |
416.5 GB |
70.6 GB |
2.7 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MANTA:MANTA_SOMATIC (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
33m 19s |
2m 38s |
28m 1s |
2m 40s |
829.9 MB |
937% |
804.4 GB |
208.5 MB |
157.1 GB |
202.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:CALCULATECONTAMINATION (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
12s |
2s |
8s |
2s |
776.7 MB |
193% |
98.6 MB |
705.7 KB |
0 bytes |
700.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:FILTERMUTECTCALLS (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
31s |
2s |
19s |
10s |
571.4 MB |
183% |
5.2 GB |
2.4 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_NORMAL (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
7s |
2s |
3s |
2s |
263.1 MB |
287% |
103.7 MB |
2.3 MB |
0 bytes |
2.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30)
|
8s |
3s |
3s |
2s |
291.6 MB |
294% |
104.2 MB |
2.3 MB |
0 bytes |
2.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GETPILEUPSUMMARIES_NORMAL (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
2m 34s |
1m 7s |
33s |
54s |
564.5 MB |
133% |
581.6 MB |
734.3 KB |
138.6 MB |
744.0 KB |
1 |