|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:SVDB_MERGE (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
9s |
7s |
- |
- |
34.5 MB |
4568% |
11.3 MB |
1.7 MB |
0 bytes |
200.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:TIDDIT_NORMAL:TABIX_BGZIP_TIDDIT_SV (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
5s |
4s |
- |
- |
3.2 MB |
103% |
512.2 KB |
76.2 KB |
0 bytes |
80.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:TIDDIT_NORMAL:TIDDIT_SV (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
6m 36s |
49s |
5m 2s |
45s |
8.1 GB |
271% |
36.7 GB |
2.1 GB |
0 bytes |
605.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:TIDDIT_TUMOR:TABIX_BGZIP_TIDDIT_SV (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
8s |
6s |
- |
- |
3.2 MB |
113% |
483.2 KB |
71.5 KB |
0 bytes |
76.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TIDDIT:TIDDIT_TUMOR:TIDDIT_SV (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
17m 1s |
49s |
13m 26s |
2m 46s |
9.7 GB |
339% |
153.6 GB |
6.8 GB |
128.2 GB |
2.0 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNFILTER (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
16s |
3s |
3s |
9s |
360.4 MB |
3872% |
1.4 GB |
8.5 MB |
0 bytes |
30.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
29m 14s |
50s |
25m 21s |
3m 2s |
4.0 GB |
1125% |
342.3 GB |
193.5 MB |
25.3 GB |
969.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSOR2_MSI (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
22m 4s |
5s |
19m 34s |
2m 25s |
2.9 GB |
102% |
39.7 GB |
2.2 MB |
38.1 GB |
3.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:MSISENSORPRO_MSISOMATIC (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
15m 27s |
3s |
12m 44s |
2m 40s |
2.0 GB |
104% |
38.5 GB |
2.6 MB |
35.8 GB |
2.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:SCARHRD (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
32s |
28s |
2s |
1s |
333.1 MB |
676% |
41.8 MB |
14.6 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:TIH_HRD_CALLING (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
57s |
29s |
25s |
2s |
1.4 GB |
191% |
318.7 MB |
11.6 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:WHATSHAP_MUTECT2 (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30_vs_1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
1h 31m |
7s |
1h 28m |
2m 28s |
1.8 GB |
100% |
71.9 GB |
1.5 MB |
53.7 GB |
1.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3m 5s |
51s |
1m 41s |
32s |
818.3 MB |
306% |
25.8 GB |
13.3 GB |
0 bytes |
132.3 MB |
1 |
|
aborted
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30)
|
21m 31s |
53s |
17m 59s |
2m 38s |
1.9 GB |
290% |
136.0 GB |
71.0 GB |
4.0 KB |
2.6 GB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
29m 13s |
17s |
28m 52s |
3s |
7.6 GB |
114% |
600.3 MB |
49.4 MB |
0 bytes |
50.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30)
|
14h 40m |
2s |
14h 40m |
13s |
68.9 GB |
104% |
1.8 GB |
487.6 MB |
0 bytes |
487.4 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
4s |
3s |
0s |
0s |
15.0 MB |
90% |
1012.0 KB |
2.1 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30)
|
5s |
3s |
0s |
1s |
15.3 MB |
92% |
1012.5 KB |
2.1 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BGFD-N1-BDNA-1_2375WFLT3_s30)
|
3m 18s |
49s |
1m 41s |
48s |
577.2 MB |
141% |
18.6 GB |
11.6 MB |
0 bytes |
1.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (1029_BGFD-T1-TDNA-1_23FC2GLT4_s30)
|
9m 44s |
4s |
7m 4s |
2m 36s |
577.1 MB |
108% |
71.9 GB |
12.4 MB |
0 bytes |
1.2 MB |
2 |