succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 4s 0s 0s 0 bytes 208% 86.8 KB 3.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 19s 16s 0s 2s 15.6 MB 103% 2.3 MB 16.0 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (BVT_FFPE_TDNA_crv_04_A23T277LT4_1) 22s 6s 4s 11s 667.1 MB 5356% 1.5 GB 7.7 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (BVT_FFPE_TDNA_liv_01_A23T277LT4_1) 23s 9s 4s 9s 352.8 MB 3459% 1.3 GB 7.2 MB 0 bytes 29.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1) 18s 6s 2s 9s 330.3 MB 1960% 1.0 GB 4.5 MB 0 bytes 27.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (BVT_FFPE_TDNA_crv_04_A23T277LT4_1) 38m 43s 5s 31m 19s 7m 18s 7.5 GB 1171% 323.9 GB 177.1 MB 104.7 GB 863.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (BVT_FFPE_TDNA_liv_01_A23T277LT4_1) 32m 47s 6s 25m 29s 7m 11s 6.1 GB 1159% 274.8 GB 146.1 MB 88.8 GB 832.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1) 6m 48s 4s 4m 40s 2m 3s 1.6 GB 1158% 81.0 GB 32.7 MB 19.6 GB 721.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (BVT_FFPE_TDNA_crv_04_A23T277LT4_1;tnseq) 6s 4s - - 21.8 MB 7632% 137.6 KB 26.5 KB 0 bytes 36.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (BVT_FFPE_TDNA_liv_01_A23T277LT4_1;tnseq) 3s 2s - - 25.3 MB 8316% 142.8 KB 26.5 KB 0 bytes 36.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BCFTOOLS_STRIP_FILTER (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1;tnseq) 5s 3s - - 18.2 MB 6368% 133.4 KB 23.4 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (BVT_FFPE_TDNA_crv_04_A23T277LT4_1) 25s 6s 9s 9s 25.6 MB 162% 3.6 GB 6.7 MB 0 bytes 6.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (BVT_FFPE_TDNA_liv_01_A23T277LT4_1) 26s 7s 9s 9s 37.8 MB 269% 3.5 GB 6.3 MB 0 bytes 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1) 28s 10s 8s 9s 32.8 MB 227% 3.4 GB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (BVT_FFPE_TDNA_crv_04_A23T277LT4_1) 4s 2s 1s 1s 20.1 MB 1804% 65.1 MB 65.2 MB 0 bytes 65.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (BVT_FFPE_TDNA_liv_01_A23T277LT4_1) 4s 1s 1s 2s 21.7 MB 2128% 59.7 MB 59.8 MB 0 bytes 59.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (NA12878_c_0002_gDNA_0005_B23KYWJLT4_1) 7s 4s 1s 2s 22.3 MB 2597% 24.9 MB 24.9 MB 0 bytes 24.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) 22s 3s 9s 9s 46.2 MB 262% 4.0 GB 5.5 MB 0 bytes 5.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_SORT (chip_pon) 4s 2s - - 21.6 MB 1630% 43.8 MB 44.1 MB 0 bytes 44.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_GERMLINE:BCFTOOLS_NORM (BVT_FFPE_TDNA_crv_04_A23T277LT4_1) 24s 7s 7s 9s 42.1 MB 268% 3.5 GB 2.1 MB 0 bytes 2.1 MB 1
744 items found |
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