succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed) 46s 42s - - 5.4 MB 101% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity;null) 1m 24s 1m 23s - - 6.1 MB 105% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr14_64122012-64122133;null) 8s 7s - - 6.1 MB 86% 1.5 MB 401.0 KB 0 bytes 408.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 8s 7s - - 6.2 MB 95% 1.6 MB 442.7 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr19_47340800-47341813;null) 7s 6s - - 3.1 MB 89% 395.2 KB 84.0 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_30730753-30730788;null) 7s 6s - - 6.1 MB 86% 1.4 MB 422.1 KB 0 bytes 428.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_93795409-93795507;null) 21s 19s - - 6.2 MB 101% 1.6 MB 432.2 KB 0 bytes 440.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 1m 45s 1m 34s 9s 2s 259.6 MB 219% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 26s 18s 58s 10s 274.6 MB 115% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 24s 1m 23s 0s 0s 0 bytes 91% 99.6 KB 25.2 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 33s 16s 0s 16s 16.6 MB 103% 11.2 MB 114.5 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:AggregateBatchData (aih_cnv_cohort_aih_cnv_agg_batch) 11m 1s 2s 2m 22s 8m 36s 8.8 GB 91% 2.2 GB 810.2 MB 2.1 GB 810.3 MB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_CPH) 18m 32s 1m 16s 14m 33s 2m 42s 776.4 MB 220% 372.3 GB 334.9 GB 0 bytes 23.2 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_D36) 16m 26s 1m 16s 12m 48s 2m 21s 2.6 GB 220% 315.2 GB 282.7 GB 0 bytes 19.4 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_DNH) 17m 36s 1m 15s 13m 57s 2m 23s 756.2 MB 219% 348.3 GB 313.1 GB 0 bytes 21.7 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_DOI) 19m 41s 1m 28s 14m 38s 3m 34s 776.5 MB 228% 377.5 GB 339.2 GB 0 bytes 23.7 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_ED4) 15m 17s 1m 26s 10m 16s 3m 34s 4.0 GB 235% 256.1 GB 229.6 GB 0 bytes 15.9 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_FH7) 16m 43s 1m 10s 13m 3s 2m 29s 764.0 MB 231% 325.3 GB 293.2 GB 0 bytes 20.4 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_HI8) 12m 33s 1m 10s 9m 37s 1m 45s 2.9 GB 236% 230.9 GB 207.1 GB 0 bytes 14.5 GB 1
succeeded NFCORE_SAREK:SAREK:AIH_CNV:CalcPanelCoverage (aih_cnv_cohort_calc_panel_coverage_869_HV2) 17m 52s 1m 9s 14m 14s 2m 28s 772.5 MB 229% 352.4 GB 316.9 GB 0 bytes 22.1 GB 1
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