File Info
- Filename
- FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.gene_level.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0034/tools__44c19e3d--20260605-212233/variant_calling/hrd/TiH/FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/FACETS/FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.gene_level.txt
- Size
- 4.2 MB
- Workflow Run
- sarek-cgp-dna-exp0034-tools-20260605-212233
- Published
- Jun 05, 2026 4:21 PM
Content
View in new tabsample gene chrom gene_start gene_end tsg seg median_cnlr_seg segclust seg_start seg_end cf.em tcn.em lcn.em cf tcn lcn seg_length mcn genes_on_seg gene_snps gene_het_snps spans_segs cn_state filter FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 A1BG 19 58345178 58353499 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 A1CF 10 50799409 50885675 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 A2M 12 9067664 9116229 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 37 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 A2ML1 12 8822472 8887001 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 38 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 A3GALT2 1 33306766 33321098 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 A4GALT 22 42692112 42721298 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 A4GNT 3 138123718 138132387 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AAAS 12 53307456 53324864 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AACS 12 125065379 125143333 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AADAC 3 151814037 151828488 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AADACL2 3 151733916 151761339 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AADACL3 1 12716115 12728759 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AADACL4 1 12644547 12667086 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AADAT 4 170060222 170091699 FALSE 360 -0.641187509684452 28 169424742 172229692 NA 2 NA NA 2 NA 2804950 NA 6 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AAGAB 15 67201033 67255195 FALSE 1034 -0.650081137244343 25 67202833 68183661 0.276933305076759 1 0 0.276933305076759 1 0 980828 1 6 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AAK1 2 69457997 69674349 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AAMDC 11 77821109 77918432 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AAMP 2 218264123 218270257 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AANAT 17 76453351 76470117 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AAR2 20 36236459 36270918 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AARD 8 116938199 116944487 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AARS 16 70252295 70289543 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AARS2 6 44299654 44313326 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 24 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AARSD1 17 42950526 42964498 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AASDH 4 56338287 56387508 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 21 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AASDHPPT 11 106075501 106098710 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AASS 7 122075647 122144280 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AATF 17 36948875 37056871 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AATK 17 81117295 81166077 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 23 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABAT 16 8674565 8784575 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 16 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA1 9 104781002 104928237 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 52 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA10 17 69147214 69244846 FALSE 1222 -0.514495507986631 34 68551917 69149999 NA 2 NA NA 2 NA 598082 NA 5 36 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA12 2 214931542 215138428 FALSE 213 0.456047132970003 70 214754319 214932608 0.569287299993522 5 NA 0.569287299993522 5 NA 178289 NA 2 57 3 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA13 7 48171458 48647496 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 90 9 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA2 9 137007227 137028922 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 53 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA3 16 2275881 2340746 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 37 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA4 1 93992835 94121132 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 52 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA5 17 69244311 69327244 FALSE 1223 -0.496089611473999 34 69152090 70130906 NA 2 NA NA 2 NA 978816 NA 4 39 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA6 17 69078702 69141888 FALSE 1222 -0.514495507986631 34 68551917 69149999 NA 2 NA NA 2 NA 598082 NA 5 39 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA7 19 1040101 1065572 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 52 8 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA8 17 68867292 68955392 FALSE 1222 -0.514495507986631 34 68551917 69149999 NA 2 NA NA 2 NA 598082 NA 5 39 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCA9 17 68974488 69061064 FALSE 1222 -0.514495507986631 34 68551917 69149999 NA 2 NA NA 2 NA 598082 NA 5 39 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB1 7 87503633 87713323 FALSE 542 1.15166591321712 85 87503184 87600983 0.593481580287395 9 NA 0.593481580287395 9 NA 97799 NA 1 41 4 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB10 1 229516582 229558695 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 17 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB11 2 168915498 169031324 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB4 7 87401697 87480435 FALSE 541 -0.332675018287135 44 86907683 87475517 0.18904974046126 3 NA 0.18904974046126 3 NA 567834 NA 5 31 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB5 7 20615207 20777038 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB6 2 219209766 219219017 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 21 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB7 23 75051554 75156732 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB8 7 151028422 151047782 FALSE 574 -0.383372083232003 41 150947860 151064227 NA 2 NA NA 2 NA 116367 NA 7 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCB9 12 122920951 122981649 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC1 16 15949577 16143074 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 35 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC10 6 43427366 43450430 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC11 16 48166910 48247568 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 34 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC12 16 48081006 48156018 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 31 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC2 10 99782640 99852594 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 33 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC3 17 50634777 50692252 FALSE 1201 1.63330252478071 100 50634933 50691968 0.593481580287395 13 NA 0.593481580287395 13 NA 57035 NA 1 38 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC4 13 95019829 95301475 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 32 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC5 3 183919934 184018015 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 32 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC6 16 16148928 16223522 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 35 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC8 11 17392498 17476879 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 40 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCC9 12 21797401 21942529 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 41 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCD1 23 153724868 153744762 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 14 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCD2 12 39550033 39619751 FALSE 863 -0.717747500660561 19 38323881 40466037 0.593443012170704 1 0 0.593443012170704 1 0 2142156 1 8 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCD3 1 94418455 94518666 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCD4 14 74285423 74303056 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCE1 4 145097932 145129179 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCF1 6 30571376 30597179 FALSE 442 -0.707992332207312 21 30547554 30653233 0.328777186374237 1 0 0.328777186374237 1 0 105679 1 8 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCF2 7 151212490 151227230 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 15 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCF3 3 184186023 184194012 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCG1 21 42199689 42297244 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCG2 4 88090264 88231322 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCG4 11 119149012 119162653 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCG5 2 43812472 43838865 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABCG8 2 43831942 43882987 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD1 2 27123789 27130812 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD10 3 111979010 111993363 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD11 7 73736094 73738867 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD12 20 25294743 25390983 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD12B 14 50872160 50904970 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD13 13 108218379 108234255 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD14A 3 51971426 51981199 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD14A-ACY1 3 51974706 51989183 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD14B 3 51968510 51983409 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD15 17 29560547 29567137 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD16A 6 31686949 31703444 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD16B 20 63861498 63862988 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD17A 19 1876810 1885547 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD17B 9 71862452 71910931 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD17C 15 80679684 80755621 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD18 4 127965306 128039927 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD2 15 89087459 89202360 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD3 18 21650897 21704805 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD4 14 22598237 22613215 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD5 3 43690108 43734371 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD6 3 58237506 58295693 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABHD8 19 17292131 17310236 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABI1 10 26746593 26861087 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABI2 2 203328219 203447723 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 24 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABI3 17 49210227 49223225 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABI3BP 3 100749156 100993515 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 66 10 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABL1 9 130713946 130887675 FALSE 697 2.18123863602964 118 130713294 130887622 0.593481580287395 20 NA 0.593481580287395 20 NA 174328 NA 1 30 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABL2 1 179099327 179229684 FALSE 72 2.45609567701855 123 179095148 179108267 0.593481580287395 24 NA 0.593481580287395 24 NA 13119 NA 2 52 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABLIM1 10 114431113 114685003 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 29 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABLIM2 4 7965310 8158832 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 23 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABLIM3 5 149141483 149260542 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 25 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABO 9 133250401 133275219 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABR 17 1003518 1229738 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 31 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABRA 8 106759483 106770245 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABRACL 6 139028682 139043302 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABRAXAS1 4 83459517 83523348 TRUE 345 0.496323235674968 71 83459740 83588265 0.593481580287395 5 NA 0.593481580287395 5 NA 128525 NA 3 28 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABRAXAS2 10 124801785 124836670 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABT1 6 26596952 26600744 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABTB1 3 127672935 127680920 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ABTB2 11 34150988 34358008 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC000120.2 7 92112159 92179511 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 22 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC000120.3 7 92131774 92245924 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 30 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC001226.2 13 76992078 77129589 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 56 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC002094.3 17 28364288 28368012 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC002310.4 16 30534227 30558279 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC002310.5 16 30525923 30534852 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC002985.1 19 18907013 18934397 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC002996.1 12 111753890 111791418 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC003002.1 19 57363566 57398584 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC003002.2 19 57394183 57438457 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 19 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC003002.3 19 57389884 57419994 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC003005.1 19 57487718 57505381 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 13 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC003006.1 19 57682045 57753575 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 27 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC003688.1 17 7246829 7262089 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004076.1 19 57437970 57477536 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 24 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004080.3 7 27163535 27180013 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004593.3 7 29122340 29514667 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 20 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004687.2 17 58345206 58417595 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 45 4 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004691.2 7 30852273 30923812 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004754.1 16 249547 269943 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004805.1 17 65538102 65641033 FALSE 1219 1.76982503049262 105 65528767 65561575 0.593481580287395 14 NA 0.593481580287395 14 NA 32808 NA 2 14 4 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004832.3 22 30409255 30428990 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004922.1 7 99325879 99394653 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC004997.1 22 30285238 30299482 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005020.2 7 99558695 99607810 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005041.1 2 74393836 74421662 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005154.5 7 30497077 30550761 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005258.1 19 2269525 2341172 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005324.3 17 15571491 15651653 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 22 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005324.4 17 15699692 15744778 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 19 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005520.1 14 73851971 73932278 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005670.2 17 46923133 47049932 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005697.1 17 27798806 27893365 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005702.1 17 59940908 59973101 FALSE 1206 0.676691816473717 77 59893075 59945389 0.593481580287395 6 NA 0.593481580287395 6 NA 52314 NA 2 27 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005726.1 17 28455752 28614197 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 91 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005779.2 19 45179822 45202444 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005832.4 12 4604944 4662643 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005833.1 12 4649101 4774184 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 24 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005837.2 17 76732978 76738522 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 16 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC005943.1 19 1578339 1605445 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC006030.1 2 74211604 74363377 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 35 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC006059.2 3 42705756 42804518 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 22 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC006064.6 12 6556886 6607367 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 64 1 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC006254.1 3 52813282 52835729 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC006486.1 19 42234583 42255132 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC006518.7 12 10881011 10884255 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC006538.2 19 2717769 2740048 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007040.2 2 70939318 70995336 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 31 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007192.1 19 18153158 18178117 FALSE 1319 1.77375950181051 105 18153115 18175590 0.593481580287395 14 NA 0.593481580287395 14 NA 22475 NA 3 35 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007240.1 2 10122739 10199288 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007326.4 22 18906238 18947732 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007375.1 14 77098311 77225462 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007731.5 22 20429241 20446620 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007846.2 17 5772926 6080792 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC007998.2 18 35443871 35497940 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008012.1 12 4273762 4405490 FALSE 832 2.16514917403125 118 4269876 4445774 0.593481580287395 19 NA 0.593481580287395 19 NA 175898 NA 5 50 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008073.3 2 24124366 24190436 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008397.2 19 18207961 18255419 FALSE 1320 -0.249880581547498 49 18177171 18281093 0.331933131290263 3 NA 0.331933131290263 3 NA 103922 NA 9 18 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008403.1 19 48465837 48472431 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008481.3 19 11466240 11505698 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008537.1 19 40801297 40898282 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 23 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008575.1 5 112827213 112867582 FALSE 389 1.39254480129206 93 112707431 112845879 0.593481580287395 11 NA 0.593481580287395 11 NA 138448 NA 2 43 8 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008581.2 5 77030902 77152155 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008676.3 5 157341596 157460100 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008687.1 19 49022953 49036895 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008687.8 19 49055793 49065076 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008695.1 5 131425891 131796983 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 60 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008750.8 19 51350373 51368099 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008758.1 19 12461559 12551474 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008758.4 19 12379189 12401274 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008758.5 19 12391949 12441082 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008758.6 19 12433103 12484816 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008763.2 19 7629796 7643048 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008763.3 19 7678501 7682854 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008764.1 19 16479067 16628204 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 59 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008764.4 19 16577642 16660115 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008770.1 19 12017888 12052967 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008770.2 19 11925075 11979290 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008878.1 19 7507052 7519622 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008878.2 19 7533595 7540059 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008878.3 19 7382834 7472477 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 24 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC008982.1 19 38817471 38840178 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009086.2 16 29663279 29695144 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009119.2 16 83908132 83951445 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009133.6 16 29812261 29820092 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009163.2 16 75528532 75545428 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009163.4 16 75412684 75464706 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009336.2 2 176151085 176173097 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009690.1 15 72284727 72375981 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009690.3 15 72266746 72319946 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009879.2 8 66430185 66445324 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC009879.3 8 66432486 66518524 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010132.3 7 42909273 42932174 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010197.2 12 21536203 21657798 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010255.3 5 122129622 122183949 FALSE 391 1.02962638304894 83 122077011 122464187 0.593481580287395 8 NA 0.593481580287395 8 NA 387176 NA 4 8 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010319.2 19 17436611 17460804 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010323.1 19 8308283 8321379 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010325.1 19 50776141 50793142 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010326.2 19 57876765 57916591 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010327.1 19 55154757 55160671 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010422.3 19 12643831 12648397 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010422.5 19 12664828 12669397 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010422.6 19 12525720 12580975 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010422.8 19 12668071 12681834 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010463.1 19 17267418 17282966 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010487.3 19 52880663 52962768 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 19 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010522.1 19 57819719 57858941 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010531.1 16 87302876 87334273 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010542.3 16 66469812 66517312 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010547.4 16 71447600 71489311 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010615.4 19 21405159 21491266 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010616.2 19 41956879 41994232 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 31 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010619.1 19 49462752 49486231 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC010646.1 19 17235940 17255448 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011330.3 15 43614208 43632283 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011448.1 19 19516227 19536076 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011452.1 19 49909501 49958391 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011455.2 19 38915404 38949855 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011462.1 19 41350853 41425001 FALSE 1339 1.73543190740636 103 41330682 41353939 0.593481580287395 14 NA 0.593481580287395 14 NA 23257 NA 3 32 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011473.4 19 50996018 51009581 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011479.1 19 38289151 38304910 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011498.4 19 4528427 4540067 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011499.1 19 5784005 5785619 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011511.1 19 10305427 10316009 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011511.4 19 10315471 10320678 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011530.1 19 45779437 45785973 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC011604.2 12 20815674 21090245 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 28 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC012184.2 16 70299194 70372582 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC012213.5 8 103398658 103501895 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC012254.2 18 47108188 47176345 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC012309.1 19 37093019 37210512 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC012476.1 15 40695129 40732158 FALSE 1011 0.874388432684245 80 40695135 40732310 0.593481580287395 7 NA 0.593481580287395 7 NA 37175 NA 2 21 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC012531.2 12 53985845 54034888 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC012651.1 15 42348103 42412317 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 30 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC013394.1 15 92883413 92949230 FALSE 1058 1.4078319488902 93 92900318 93052532 0.593481580287395 11 NA 0.593481580287395 11 NA 152214 NA 3 23 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC013489.1 15 88459501 88546585 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC013717.1 2 44168851 44320310 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC015688.4 17 27623364 27640777 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC015802.6 17 76563710 76570544 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC015813.2 17 57989038 58007246 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC017083.3 2 68131238 68261230 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC018362.3 15 42497395 42548786 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC018512.1 15 43772617 43799133 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 24 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC018523.2 11 14493783 14520344 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC018554.3 16 60358455 60359480 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC018709.1 4 186426546 186555328 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC018755.2 19 51612091 51646889 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 17 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC019117.2 7 17299295 17467234 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC020636.2 3 150882997 150941743 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC020907.6 19 35106510 35124297 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC020909.1 19 50415799 50428409 FALSE 1354 1.12344358889112 84 50378745 50417274 0.593481580287395 9 NA 0.593481580287395 9 NA 38529 NA 3 12 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC020915.1 19 58278966 58315197 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC020915.5 19 58228914 58315183 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC020922.1 19 55352301 55359516 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC021097.2 7 151207837 151227166 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 16 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC021097.3 7 151207837 151210378 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC021660.3 3 98521133 98585498 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC022335.1 12 21047179 21176895 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 10 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC022384.1 3 10249372 10285796 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC022400.6 10 73796514 73811651 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 35 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC022414.1 5 77086732 77427124 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC022826.2 8 73688691 73878854 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC023055.1 12 55757275 55827546 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC023509.3 12 53506688 53625979 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC024592.3 19 5866171 5903787 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC025165.3 12 57773028 57787046 FALSE 894 -0.430411211949774 37 57767016 57809571 NA 2 NA NA 2 NA 42555 NA 6 6 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC025263.2 12 69801669 69855363 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC025283.2 16 3382113 3397745 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC025283.3 16 3365099 3479550 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 31 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026316.5 3 170418868 170860380 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026398.1 5 131807143 131994278 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 32 5 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026464.1 16 69335276 69351730 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026464.3 16 69335091 69356306 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026464.4 16 69299682 69322700 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026464.6 16 69328644 69334871 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026786.1 12 133130984 133202369 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC026954.2 17 7312661 7319174 FALSE 1142 0.21076670068814 64 7307353 7324199 0.593443012170704 4 NA 0.593443012170704 4 NA 16846 NA 4 20 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC027644.4 7 66628958 66811189 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC027796.3 17 3585149 3636249 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC034102.2 12 56101331 56109289 FALSE 885 1.22657425947463 87 56076841 56103531 0.593481580287395 9 NA 0.593481580287395 9 NA 26690 NA 2 14 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC036214.3 8 79918860 80080775 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC037459.1 8 22589274 22602084 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC040162.1 16 67929614 67936017 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC046185.1 17 63702845 63752097 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC048338.1 12 122207779 122266423 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC055811.2 17 17202649 17237185 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 34 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC058822.1 4 53377839 54295272 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 98 15 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC067752.1 10 62520448 62672011 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC067968.1 19 44025354 44087318 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068234.1 17 47253897 47344292 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068533.4 7 66087761 66152277 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068547.1 2 151802651 151973949 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068580.4 11 1734821 1763954 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068631.2 3 186581995 186597103 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068775.1 12 10412312 10436001 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 10 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068790.8 12 123973944 124088594 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068831.7 15 90966190 91022566 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 38 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068896.1 10 124617080 124791727 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068946.1 2 219075329 219170827 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC068946.2 2 219209772 219222738 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 28 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC069257.3 3 196248230 196318222 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC069368.1 15 64841883 64930920 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC069444.2 3 119703076 119807570 FALSE 277 -0.549951694983867 31 119616037 119817077 NA 2 NA NA 2 NA 201040 NA 6 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC069503.2 12 121888809 121921470 FALSE 927 -0.556106487244151 31 121843771 122003709 NA 2 NA NA 2 NA 159938 NA 4 7 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073082.1 2 48632291 48755724 FALSE 136 -0.842193967001169 15 48346226 48725689 0.449390955025597 1 0 0.449390955025597 1 0 379463 1 7 24 4 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073111.3 7 150368790 150396915 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073283.3 2 47065941 47176511 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073508.2 17 40627356 40665141 FALSE 1182 1.91181667479361 111 40620051 40653758 0.593481580287395 16 NA 0.593481580287395 16 NA 33707 NA 2 57 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073610.2 12 48921963 48939663 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073610.3 12 48903503 48957365 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073612.1 12 71674204 71698968 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC073896.1 12 56285916 56316059 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC074143.1 16 67163385 67165815 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC078927.1 12 66123917 66169985 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC079447.1 2 99141485 99322741 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 33 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC079594.2 3 160227454 160449829 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 51 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC083800.1 3 119147375 119187807 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC084337.2 11 6481485 6508978 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC087289.3 17 75898645 75930129 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 35 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC087632.1 15 64181180 64381440 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC087721.2 15 41284013 41380743 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC090004.1 3 14135217 14148252 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 7 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC090227.1 18 49795793 49837623 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC090360.1 18 80034346 80097088 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC090517.4 15 56652488 56918571 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 19 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC090527.2 15 45587351 45676314 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC091057.6 15 30624548 30685606 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC091167.2 15 90249556 90272208 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC091167.6 15 90266317 90314499 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC091167.7 15 90234200 90265462 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC091551.1 18 50968019 51058144 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 18 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC091959.3 5 146203550 146339251 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092017.3 1 211082872 211188533 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092042.3 3 42809446 43055871 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092073.1 19 34396315 34409364 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092111.3 12 8138140 8175320 FALSE 842 -0.749785793032381 18 7924480 8175292 0.387809979850725 1 0 0.387809979850725 1 0 250812 1 7 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092143.1 16 89919165 89936092 FALSE 1131 1.56043341681678 98 89911245 89936047 0.593481580287395 12 NA 0.593481580287395 12 NA 24802 NA 4 17 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092329.3 19 23222755 23274221 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092587.1 2 99154998 99195298 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092647.5 7 55887277 55955239 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092718.3 16 81053587 81096296 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC092718.8 16 81022316 81096284 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093155.3 1 86993009 87169204 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093227.2 19 37689865 37719188 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093423.3 1 89633140 89933250 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093512.2 16 30053090 30070420 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093525.1 16 2513965 2527955 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093525.2 16 2496032 2520218 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093668.1 7 102541501 102592444 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 6 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093668.2 7 102483344 102543764 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093668.3 7 102538417 102543849 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093827.5 4 86886472 86936178 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC093899.2 2 169479480 169525922 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC096887.1 3 52969119 53099453 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC097104.1 12 56449700 56488170 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 28 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC097625.1 23 15561047 15675608 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 24 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC097634.4 3 70959226 71754229 FALSE 266 1.13300035445803 84 69734550 71589030 0.593481580287395 9 NA 0.593481580287395 9 NA 1854480 NA 4 57 4 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC097636.1 3 51798803 51830856 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC097637.1 3 52221081 52231190 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC098484.3 1 42767292 42794493 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC098582.1 4 88523810 88649847 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC098588.1 4 144210701 145098174 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC098650.1 3 28349178 29767537 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC098850.3 17 16690261 16804453 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC099811.2 17 42119674 42154916 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC099850.2 17 59197566 59215226 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 16 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC100868.1 8 132024238 132085655 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 24 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104109.3 5 134167170 134226071 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104151.1 16 76553417 76819624 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104304.1 3 46581150 46617226 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104389.4 11 5254392 5678434 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 98 12 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104389.5 11 5248270 5254783 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104452.1 3 49416777 49429314 FALSE 254 -0.617285049863544 28 49413119 49681966 NA 2 NA NA 2 NA 268847 NA 7 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104472.3 3 155763043 155854442 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104532.1 19 5904841 5914707 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104581.2 17 7925931 7930622 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC104662.2 4 25160663 25277306 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC105052.1 7 102582523 102642869 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 8 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC105052.3 7 102637049 102671641 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 5 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC106886.5 16 30704067 30745169 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 54 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC107871.1 15 68184032 68229718 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC107959.5 8 23084403 23115536 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC108488.2 2 3531984 3547957 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC108941.2 4 69810780 69847786 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC109583.3 3 46742092 46812558 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC110275.1 8 43018424 43077334 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC112128.1 3 113361901 113515151 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 41 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC112504.2 3 141738474 141807919 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC113348.2 5 178694605 178729335 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC113554.1 17 63484823 63521848 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC114490.2 1 34981533 35031741 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC114490.3 1 34974356 34985313 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC116366.3 5 132410832 132646079 FALSE 394 -0.271932115962752 46 131990195 132441120 0.261157737158964 3 NA 0.261157737158964 3 NA 450925 NA 9 94 6 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC117378.1 12 56714612 56741535 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC117457.1 3 178419123 178843300 FALSE 296 1.11990635751143 84 177025548 179245109 0.593481580287395 9 NA 0.593481580287395 9 NA 2219561 NA 6 5 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC118470.1 1 247711813 247723764 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC118549.1 1 77562416 77683419 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC118553.2 1 99970011 100083321 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC119674.2 1 56173433 56524495 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC120057.2 17 7240427 7244635 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC120114.4 16 29817239 29830627 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC124312.1 15 24955034 25000276 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC126283.2 4 109713916 109801999 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC127029.3 17 63917203 63931385 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 11 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC129492.3 17 8150816 8162975 FALSE 1147 -0.887294624890009 13 8096639 8189086 0.522719719214577 1 0 0.522719719214577 1 0 92447 1 7 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC131160.1 3 183815568 183884889 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC134669.1 17 31305213 31318831 FALSE 1162 1.15409771633477 85 31090043 31387166 0.593481580287395 9 NA 0.593481580287395 9 NA 297123 NA 5 5 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC134980.3 15 22015233 22095857 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC135050.2 16 31083439 31094956 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC135178.2 17 8368638 8383187 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC137834.1 12 57249609 57296484 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 19 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC138696.1 8 143247110 143276403 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC138811.2 16 18788063 18801519 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC138894.1 16 28456371 28492098 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC139491.7 5 176063748 176126959 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC139530.2 17 81703371 81720539 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 18 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC140504.1 16 15395754 15515348 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC142391.1 5 139442316 139462707 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC144573.1 8 37934340 37965953 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC187653.1 7 290170 294422 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC233992.2 8 144353228 144355609 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC235565.2 23 102360395 102471812 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC239799.1 1 146113652 146229000 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC243547.3 1 145927258 145977811 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC243967.1 19 41708612 41761282 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 17 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC244197.3 23 149482543 149533935 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC244517.10 5 141223372 141245861 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC245033.1 15 82536788 82573194 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC245748.1 19 44329695 44401608 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 15 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AC253536.7 22 23971378 23980469 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAA1 3 38103129 38137242 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 31 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAA2 18 49782167 49813960 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACACA 17 37084988 37406818 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 67 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACACB 12 109116595 109268226 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 56 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAD10 12 111686056 111757107 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAD11 3 132558138 132660723 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAD8 11 134253495 134265855 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAD9 3 128879596 128916067 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 21 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACADL 2 210187939 210225491 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACADM 1 75724347 75787575 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 16 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACADS 12 120725735 120740008 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACADSB 10 123008979 123058311 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACADVL 17 7217125 7225273 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAN 15 88803442 88875354 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 40 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAP1 17 7336529 7351478 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAP2 3 195274736 195443078 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 23 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAP3 1 1292376 1309609 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAT1 11 108121516 108147776 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACAT2 6 159760328 159779055 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 11 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACBD3 1 226144679 226186730 FALSE 92 1.48771424914111 98 226062747 226146719 0.593481580287395 12 NA 0.593481580287395 12 NA 83972 NA 2 10 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACBD4 17 45132600 45144181 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACBD5 10 27195214 27242130 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACBD6 1 180269653 180502954 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACBD7 10 15077523 15088776 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACCS 11 44065925 44084222 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACCSL 11 44047981 44059977 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACD 16 67657512 67660815 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACE 17 63477061 63498380 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 31 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACE2 23 15561033 15602148 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 18 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACER1 19 6306142 6333629 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACER2 9 19409059 19452020 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACER3 11 76860867 77026797 FALSE 803 -0.341739698901511 44 76796634 77285099 0.18904974046126 3 NA 0.18904974046126 3 NA 488465 NA 7 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACHE 7 100889994 100896974 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACIN1 14 23058564 23095614 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 29 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACKR1 1 159203307 159206500 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACKR2 3 42804752 42887974 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACKR3 2 236567787 236582358 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACKR4 3 132597237 132618967 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACLY 17 41866908 41930542 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACMSD 2 134838547 134902034 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACO1 9 32384603 32454769 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACO2 22 41469125 41528989 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 18 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOD1 13 76948497 76958642 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT1 14 73537114 73543794 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT11 1 54542257 54639192 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT12 5 81330005 81394179 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT13 6 24667035 24705065 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT2 14 73567620 73575658 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT4 14 73591706 73596496 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT6 14 73610945 73619888 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT7 1 6264269 6394391 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT8 20 45841721 45857406 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOT9 23 23702253 23766475 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOX1 17 75941507 75979363 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOX2 3 58505136 58537319 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOX3 4 8366282 8440723 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACOXL 2 110732573 111118222 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 17 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACP1 2 264140 278283 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACP2 11 47239302 47248906 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACP4 19 50790415 50795224 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACP5 19 11574660 11579008 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACP6 1 147629652 147670496 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACP7 19 39083913 39111493 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACPP 3 132317367 132368298 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACR 22 50738196 50745334 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACRBP 12 6638075 6647460 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACRV1 11 125671522 125681123 FALSE 820 1.30056978887196 90 125625913 125672621 0.593481580287395 10 NA 0.593481580287395 10 NA 46708 NA 2 7 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSBG1 15 78167468 78245688 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSBG2 19 6135247 6193094 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSF2 17 50426158 50474845 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 23 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSF3 16 89088375 89164121 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 12 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSL1 4 184755595 184826818 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSL3 2 222860934 222944639 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSL4 23 109624244 109733403 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSL5 10 112374018 112428380 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSL6 5 131949973 132012243 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 23 3 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSM1 16 20623237 20698890 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSM2A 16 20451461 20487667 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 14 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSM2B 16 20536226 20576427 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSM3 16 20610243 20797581 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 34 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSM4 12 7304284 7328724 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 13 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSM5 16 20409534 20441336 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSM6 10 95194200 95228928 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSS1 20 25006230 25058980 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSS2 20 34872146 34927962 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACSS3 12 80936414 81261205 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTA1 1 229431245 229434098 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTA2 10 88935074 88991339 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 20 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTB 7 5527147 5563784 FALSE 518 2.35770599822781 121 5526439 5530560 0.593481580287395 22 NA 0.593481580287395 22 NA 4121 NA 1 12 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTBL2 5 57480016 57482809 FALSE 379 0.87728495609029 80 57481634 58459942 0.593481580287395 7 NA 0.593481580287395 7 NA 978308 NA 2 5 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTC1 15 34788095 34795726 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTG1 17 81509971 81523847 TRUE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTG2 2 73892314 73919865 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 8 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTL10 20 33666498 33668525 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTL6A 3 179562880 179588408 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTL6B 7 100643097 100656461 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTL7A 9 108862266 108863759 FALSE 687 0.600951046985776 75 107481053 108863518 0.593481580287395 6 NA 0.593481580287395 6 NA 1382465 NA 3 5 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTL7B 9 108854589 108856967 FALSE 687 0.600951046985776 75 107481053 108863518 0.593481580287395 6 NA 0.593481580287395 6 NA 1382465 NA 3 5 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTL8 1 17755313 17827063 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTL9 19 8697397 8698822 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTN1 14 68874143 68979440 FALSE 982 1.17049758939013 85 67835180 68877079 0.593481580287395 9 NA 0.593481580287395 9 NA 1041899 NA 3 23 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTN2 1 236686454 236764631 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTN3 11 66546395 66563329 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 23 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTN4 19 38647649 38731583 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR10 14 58200080 58235636 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR1A 10 102461881 102502711 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 23 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR1B 2 97655963 97664107 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR2 2 65227753 65271253 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR3 2 113889960 113962596 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR3B 7 152759749 152855378 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR3C 7 150243916 150323725 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR5 20 38748442 38772520 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 11 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR6 12 100199122 100241865 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTR8 3 53867066 53882202 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 14 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTRT1 23 128050962 128052398 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTRT2 1 3021483 3022903 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACTRT3 3 169766921 169769895 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACVR1 2 157736444 157875862 FALSE 180 1.31394966174667 90 157736366 157876253 0.593481580287395 10 NA 0.593481580287395 10 NA 139887 NA 1 23 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACVR1B 12 51951667 51997078 FALSE 877 1.85830871247888 109 51951825 51997022 0.593481580287395 15 NA 0.593481580287395 15 NA 45197 NA 1 28 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACVR1C 2 157526767 157629005 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACVR2A 2 147844517 147930826 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACVR2B 3 38453851 38493142 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACVRL1 12 51906908 51923361 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACY1 3 51983278 51989202 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACY3 11 67642555 67650659 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACYP1 14 75053221 75069483 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ACYP2 2 53970838 54305300 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AD000671.1 19 35745678 35754519 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AD000671.2 19 35739252 35745432 FALSE 1331 1.90074860676335 111 35719806 35739731 0.593481580287395 16 NA 0.593481580287395 16 NA 19925 NA 3 13 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADA 20 44619522 44652233 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADA2 22 17178790 17258235 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAD1 4 122378966 122429802 FALSE 352 -0.689691915417127 25 121839741 122741842 0.276933305076759 1 0 0.276933305076759 1 0 902101 1 7 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAD2 16 84191138 84197168 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAL 15 43330657 43354555 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM10 15 58588807 58749978 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM11 17 44759031 44781846 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 23 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM12 10 126012381 126388455 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 25 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM15 1 155050566 155062775 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 26 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM17 2 9488486 9556732 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 20 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM18 8 39584489 39730064 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM19 5 157395534 157575775 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 35 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM2 8 39743735 39838289 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM20 14 70522358 70535015 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM21 14 70452157 70459899 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 9 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM22 7 87934143 88202889 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 32 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM23 2 206443539 206621130 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM28 8 24294040 24359018 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM29 4 174829668 174978180 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM30 1 119893533 119896495 FALSE 48 -0.842352747885532 15 119623366 119906598 0.449390955025597 1 0 0.449390955025597 1 0 283232 1 5 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM32 8 39106990 39284911 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM33 20 3667965 3682246 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM7 8 24440930 24526970 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM8 10 133262403 133276868 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAM9 8 38996869 39105144 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMDEC1 8 24384285 24406013 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS1 21 26835747 26845409 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS10 19 8580242 8610735 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS12 5 33523535 33892192 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 31 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS13 9 133414358 133459402 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 40 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS14 10 70672803 70762441 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS15 11 130448974 130476641 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 15 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS16 5 5140330 5320304 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 28 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS17 15 99971589 100342005 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 25 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS18 16 77247813 77435114 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS19 5 129460265 129738683 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS2 5 179110851 179345430 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 25 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS20 12 43353866 43551921 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 42 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS3 4 72280969 72569386 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS4 1 161184308 161199056 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS5 21 26917912 26966513 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS6 5 65148736 65481920 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS7 15 78759203 78811431 FALSE 1042 -0.320554647215119 44 78590626 78800500 0.18904974046126 3 NA 0.18904974046126 3 NA 209874 NA 4 32 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS8 11 130404925 130428993 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 17 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTS9 3 64515654 64688000 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 42 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTSL1 9 17906563 18910950 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 37 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTSL2 9 133532164 133575519 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTSL3 15 83654086 84039842 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 36 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTSL4 1 150549369 150560937 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAMTSL5 19 1505018 1513604 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAP1 7 897901 955407 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAP2 17 30906344 30959322 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAR 1 154582057 154628013 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 23 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADARB1 21 45073853 45226560 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADARB2 10 1177318 1737476 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAT1 16 75596981 75623300 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAT2 6 143422832 143450673 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADAT3 19 1905378 1913447 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCK1 14 77800083 77935012 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCK2 7 140673153 140696261 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCK5 8 144373101 144393242 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 12 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY1 7 45574140 45723116 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY10 1 167809388 167914215 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 34 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY2 5 7396208 7830081 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 26 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY3 2 24819169 24919839 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY4 14 24318349 24335093 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY5 3 123282296 123449758 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY6 12 48766194 48789037 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 26 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY7 16 50246137 50318135 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 27 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY8 8 130780301 131042426 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 23 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCY9 16 3953387 4116185 FALSE 1080 1.54335577506447 98 3725331 3966922 0.593481580287395 12 NA 0.593481580287395 12 NA 241591 NA 2 22 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCYAP1 18 904943 912172 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADCYAP1R1 7 31052461 31111479 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADD1 4 2843857 2930076 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADD2 2 70607618 70768225 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADD3 10 109996368 110135565 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGB 6 146598965 146815462 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 37 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRA1 10 133070929 133131675 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRA2 8 37784191 37844896 FALSE 602 -0.505077512744522 34 37737957 37840791 NA 2 NA NA 2 NA 102834 NA 3 39 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRA3 4 22345071 22516054 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRB1 8 142449430 142545009 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 36 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRB2 1 31727117 31764893 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 38 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRB3 6 68635367 69389511 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 35 1 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRD1 12 130953907 131141469 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRE1 19 6887566 6940459 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 21 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRE2 19 14732393 14778541 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 20 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRE3 19 14619117 14690027 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 16 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRE5 19 14380501 14408725 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRF1 6 46997703 47042363 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRF2 6 47656436 47697797 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 13 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRF3 2 26308173 26346817 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRF4 6 47685864 47722021 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRF5 6 46852512 46954943 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 26 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRG1 16 57610652 57665580 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRG2 23 18989309 19122637 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRG3 16 57668187 57689378 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRG4 23 136300963 136416888 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 50 8 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRG5 16 57542421 57591681 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRG6 6 142301854 142446266 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 32 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRG7 3 100609589 100695479 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRL1 19 14147743 14206187 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 32 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRL2 1 81306160 81992436 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 32 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRL3 4 61201258 62078335 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 33 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRL4 1 78889764 79006718 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 18 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADGRV1 5 90529344 91164437 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 125 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADH1A 4 99276367 99291028 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADH1B 4 99304964 99352760 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADH1C 4 99336492 99353027 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADH4 4 99123657 99157792 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADH5 4 99070978 99088801 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADH6 4 99202638 99219537 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADH7 4 99412261 99435737 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADHFE1 8 66432486 66468907 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADI1 2 3497361 3519736 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADIG 20 38581195 38588463 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADIPOQ 3 186842690 186858463 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADIPOR1 1 202940823 202958572 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADIPOR2 12 1688574 1788678 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADIRF 10 86968192 86983934 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADK 10 74151185 74709303 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADM 11 10304680 10307397 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADM2 22 50481556 50486440 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADM5 19 49688664 49690575 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADNP 20 50888916 50931421 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADNP2 18 80109031 80147523 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADO 10 62804857 62808483 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADORA1 1 203090654 203167405 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADORA2A 22 24417879 24442360 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADORA2B 17 15944917 15975746 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADORA3 1 111499429 111503760 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADPGK 15 72751369 72785846 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADPRH 3 119579268 119589945 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADPRHL1 13 113399610 113453524 FALSE 960 0.280824540945925 67 113297479 113407354 0.593443012170704 4 NA 0.593443012170704 4 NA 109875 NA 3 26 5 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADPRHL2 1 36088875 36093932 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADPRM 17 10697594 10711233 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRA1A 8 26748150 26867273 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRA1B 5 159865080 159972544 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRA1D 20 4220631 4249074 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRA2A 10 111077163 111080907 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRA2B 2 96112875 96116245 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRA2C 4 3766348 3768526 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRB1 10 114044056 114046908 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRB2 5 148825245 148828687 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRB3 8 37962991 37966965 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADRM1 20 62302093 62308862 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADSL 22 40346500 40390463 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADSS 1 244408494 244452134 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADSSL1 14 104724186 104747325 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ADTRP 6 11712054 11807046 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AEBP1 7 44104361 44114562 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AEBP2 12 19404045 19720801 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AEN 15 88621296 88632282 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AES 19 3052910 3063107 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AF241726.2 23 37349330 38687674 FALSE 1465 0.0749747101580098 60 36236724 37572322 0.593443012170704 3 NA 0.593443012170704 3 NA 1335598 NA 5 107 4 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFAP1 4 7758714 7939926 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 21 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFAP1L1 5 149271871 149341802 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFAP1L2 10 114294824 114404756 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFDN 6 167826922 167972023 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 40 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFF1 4 86935002 87141054 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFF2 23 148500619 149000663 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 30 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFF3 2 99545419 100142739 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 29 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFF4 5 132875379 132963634 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFG1L 6 108294894 108526796 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 14 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFG3L2 18 12328944 12377314 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 19 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFM 4 73481683 73504001 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFMID 17 78187317 78207701 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFP 4 73431138 73456174 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AFTPH 2 64524305 64593005 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGA 4 177430770 177442503 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGAP1 2 235494089 236131800 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGAP2 12 57723761 57742157 FALSE 892 -0.501289708551947 34 57694315 57747297 NA 2 NA NA 2 NA 52982 NA 3 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGAP3 7 151085831 151144436 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 25 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGAP4 10 45825594 45853875 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGAP5 10 73674285 73698159 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 12 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGAP6 10 49982190 50010499 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGAP9 10 47501854 47523638 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGBL1 15 86079973 87029052 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 27 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGBL2 11 47659591 47715389 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGBL3 7 134986508 135147963 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGBL4 1 48532855 50023913 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGBL5 2 27042364 27070622 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGER 6 32180968 32184324 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 11 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGFG1 2 227472152 227561214 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGFG2 7 100539211 100568219 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGGF1 5 77029251 77065234 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGK 7 141551189 141655244 FALSE 567 -0.346454323038498 44 141006475 141708994 0.18904974046126 3 NA 0.18904974046126 3 NA 702519 NA 5 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGL 1 99850084 99924023 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 36 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGMAT 1 15572353 15585110 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGMO 7 15200318 15562015 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGO1 1 35869808 35930528 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGO2 8 140520156 140635619 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 20 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGO3 1 35930718 36072500 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGO4 1 35808172 35857890 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGPAT1 6 32168212 32178096 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGPAT2 9 136673143 136687423 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGPAT3 21 43865186 43986536 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGPAT4 6 161129979 161274061 FALSE 511 0.232361052265423 64 160752984 163562056 0.593443012170704 4 NA 0.593443012170704 4 NA 2809072 NA 6 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGPAT5 8 6708357 6759666 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGPS 2 177392644 177559299 FALSE 185 1.51147334544082 98 177215741 177392996 0.593481580287395 12 NA 0.593481580287395 12 NA 177255 NA 3 28 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGR2 7 16791811 16833433 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGR3 7 16859405 16881987 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGRN 1 1020123 1056118 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 47 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGRP 16 67482571 67483813 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGT 1 230702523 230714297 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGTPBP1 9 85546539 85742029 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 29 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGTR1 3 148697784 148743008 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGTR2 23 116170722 116174972 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGTRAP 1 11736084 11754802 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGXT 2 240868479 240880502 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AGXT2 5 34998101 35048135 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHCTF1 1 246839098 246931967 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 45 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHCY 20 34280268 34311802 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHCYL1 1 109984686 110023741 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHCYL2 7 129225023 129430211 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHDC1 1 27534035 27604431 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHI1 6 135283532 135497776 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 30 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHNAK 11 62433542 62556235 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 72 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHNAK2 14 104937244 104978357 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 66 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHR 7 16916359 17346152 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHRR 5 304176 438291 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 19 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHSA1 14 77457870 77469474 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 9 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHSG 3 186612923 186621318 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AHSP 16 31527864 31528803 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AICDA 12 8602166 8612871 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIDA 1 222668013 222713210 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIF1 6 31615184 31617021 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIF1L 9 131096476 131123152 FALSE 698 -0.692803749032214 25 130893485 131120247 0.276933305076759 1 0 0.276933305076759 1 0 226762 1 4 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIFM1 23 130129362 130165887 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIFM2 10 70098223 70132934 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 11 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIFM3 22 20965108 20981360 FALSE 1416 -0.313984805006198 44 20967902 20991844 0.18904974046126 3 NA 0.18904974046126 3 NA 23942 NA 2 20 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIG1 6 143060496 143340304 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIM2 1 159062484 159147096 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIMP1 4 106315544 106349226 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIMP2 7 6009245 6023834 FALSE 520 -0.273341933736742 46 6006303 6387310 0.261157737158964 3 NA 0.261157737158964 3 NA 381007 NA 8 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIP 11 67483041 67491103 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIPL1 17 6393693 6435199 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AIRE 21 44285838 44298648 FALSE 1411 -0.796790869313366 18 44231407 44533921 0.387809979850725 1 0 0.387809979850725 1 0 302514 1 8 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AJAP1 1 4654732 4792534 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AJM1 9 136844415 136848801 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AJUBA 14 22971174 22982642 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK1 9 127866480 127877743 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK2 1 33007940 33080996 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK3 9 4709559 4742043 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK4 1 65147549 65232145 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK5 1 77282051 77559969 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK6 5 69350984 69370013 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK7 14 96392111 96489427 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK8 9 132725578 132878777 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AK9 6 109492856 109691217 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 46 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAIN1 18 5145285 5197503 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP1 17 57085092 57121349 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP10 17 19904302 19978343 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP11 13 42272153 42323267 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP12 6 151239999 151358557 FALSE 504 -0.89879326611718 13 150866011 151348914 0.522719719214577 1 0 0.522719719214577 1 0 482903 1 2 23 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP13 15 85380571 85749358 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 54 13 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP14 23 119895837 119920716 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP2 9 110048598 110172512 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP3 12 4615508 4649047 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP4 23 50190768 50201013 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP5 14 64465499 64474503 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP6 14 32329273 32837681 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 34 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP7 6 131135666 131283535 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP8 19 15353385 15379798 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP8L 19 15380048 15419141 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKAP9 7 91940867 92110673 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 75 11 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKIP1 11 8911139 8920084 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKIRIN1 1 38991223 39006059 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKIRIN2 6 87675072 87702209 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKNA 9 114334156 114394405 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKNAD1 1 108815898 108858228 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 18 4 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1A1 1 45550543 45570049 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1B1 7 134442350 134459284 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1B10 7 134527592 134541408 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1B15 7 134549136 134579875 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1C1 10 4963253 4983283 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1C2 10 4987400 5018031 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1C3 10 5035354 5107686 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 10 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1C4 10 5195462 5218949 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1C8P 10 5154140 5185187 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1D1 7 138002324 138117986 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR1E2 10 4786629 4848062 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR7A2 1 19303965 19312146 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKR7A3 1 19282558 19289250 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKT1 14 104769349 104795751 FALSE 1001 2.03313239463349 113 104769467 104802208 0.593481580287395 18 NA 0.593481580287395 18 NA 32741 NA 2 31 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKT1S1 19 49869033 49878459 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKT2 19 40230317 40285536 FALSE 1335 2.12965133184619 118 40230456 40285283 0.593481580287395 19 NA 0.593481580287395 19 NA 54827 NA 1 34 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKT3 1 243488233 243851079 FALSE 103 2.75034685887835 127 243344311 243504202 0.593481580287395 30 NA 0.593481580287395 30 NA 159891 NA 2 46 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AKTIP 16 53491040 53504411 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL020996.2 1 25811470 25823744 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL021546.1 12 120438198 120460006 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL021997.3 6 28267121 28281580 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL022238.4 22 40346529 40410054 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 34 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL022318.4 22 39014363 39033276 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL024498.2 6 10747794 10930423 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 46 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL031281.2 1 22025511 22101360 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL031315.1 6 169419969 169702047 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL031708.1 16 1632259 1686715 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL031777.3 6 26195595 26199293 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 5 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL031847.2 1 6159430 6197757 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL033529.1 1 32465057 32600792 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL034430.1 20 10413520 10431922 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL035078.4 11 31812391 32104665 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL035425.2 23 108722070 108732687 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL035460.1 20 2814968 2818066 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049557.1 1 111722064 111755824 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049629.2 11 33698261 33722467 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049634.2 20 1540144 1620009 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 15 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049650.1 20 2467212 2508907 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049697.1 6 87408012 87511634 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049779.1 14 67659820 67690367 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049839.2 14 94592058 94624646 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049844.1 6 143807092 143844617 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL049844.3 6 143857318 143938471 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL080251.1 1 18849273 18921121 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 32 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL096711.2 6 127438406 127519001 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL096870.1 14 24332310 24337382 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL109811.4 1 11012662 11030528 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL109827.1 20 35632340 35674544 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL110118.2 14 93184973 93218586 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL117339.5 10 38094368 38360098 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL117348.2 1 225886696 225924278 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL121594.1 14 35122549 35317474 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL121722.1 20 22560553 22584261 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL121753.1 20 35267885 35280043 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL121758.1 20 646626 675800 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL121845.2 20 63738270 63740398 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL121845.3 20 63708864 63739103 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL121900.2 20 18567453 18744216 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL132671.2 6 117318211 117573571 FALSE 487 1.75805061671852 105 117317324 117341430 0.593481580287395 14 NA 0.593481580287395 14 NA 24106 NA 2 150 14 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL132780.3 14 22946270 22982258 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL133352.1 10 100505628 100529881 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL133353.2 10 99651595 99732112 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 25 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL133410.3 9 35812960 35828732 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL133500.1 23 72301691 72572843 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL135905.2 6 63572012 63583587 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL136295.1 14 24189157 24213473 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL136295.3 14 24120956 24131829 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL136295.4 14 24180395 24190416 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL136295.5 14 24151218 24167402 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL136373.1 1 46532166 46543969 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL136531.2 20 1317571 1393096 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL138752.2 9 37588413 38068687 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 66 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL139011.2 1 160216800 160285130 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL139142.2 1 173596060 173669837 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL139300.1 14 103562962 103685924 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 22 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL139353.1 14 31334312 31457441 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL157392.5 10 13610047 13655929 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL157935.2 9 127867850 127906022 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL159163.1 6 166858094 166956124 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL160269.1 9 96235331 96352058 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL160272.2 9 117704157 117877478 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL162231.1 9 34664163 34666112 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL162231.3 9 34646645 34657113 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL162377.3 13 51763951 51845159 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL162417.1 9 133098121 133163914 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 31 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL163195.3 14 20582892 20609795 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL163636.2 14 20684587 20700576 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL353588.1 6 44273194 44378957 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 47 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL355102.2 14 96204844 96263929 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL355312.5 6 149817937 149896011 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL355315.1 10 97584374 97673910 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 25 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL355916.2 14 61529128 61657964 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL355987.1 9 136738167 136748453 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL355987.3 9 136791379 136800595 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL357673.1 1 54132686 54200073 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL358075.4 1 46043661 46176488 FALSE 17 1.91961046811878 111 46040222 46043803 0.593481580287395 16 NA 0.593481580287395 16 NA 3581 NA 2 25 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL358113.1 9 69035750 69255187 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 34 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL358472.6 1 153975850 153986246 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL358472.7 1 153959151 153975887 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL359736.1 13 23979700 24321031 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 28 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL359922.1 9 21802636 22032986 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 97 7 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL360181.3 10 133390834 133420495 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL365205.1 6 41780349 41790141 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL365214.3 6 112236806 112350094 FALSE 482 -0.684947044489322 25 112071952 113860176 0.276933305076759 1 0 0.276933305076759 1 0 1788224 1 6 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL365232.1 6 73209746 73263196 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL365273.2 10 95860548 95924844 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL391650.1 1 26169516 26171831 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL445685.3 1 52020153 52033350 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL449266.1 1 108837660 108963484 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 36 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL451062.3 1 43650149 43931014 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 37 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL512428.1 6 24797373 24809798 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL512506.3 13 43883800 44028526 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL512785.2 1 162365407 162383531 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL513165.2 9 37512547 37592469 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL583836.1 10 94688154 94853073 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 16 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL589666.1 6 85557978 85615234 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL590132.1 1 210858125 211134146 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL590764.2 23 71103987 71111575 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL591806.3 1 160997957 161038962 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL592490.1 13 61409858 61427849 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL603832.3 1 112702614 112711433 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL645922.1 6 31927698 31952048 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 37 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL645941.2 6 32937364 32953122 FALSE 451 1.48707206363679 98 32934851 32952965 0.593481580287395 12 NA 0.593481580287395 12 NA 18114 NA 3 14 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL662820.1 6 33321386 33329286 FALSE 458 1.64454209701499 100 33313684 33321863 0.593481580287395 13 NA 0.593481580287395 13 NA 8179 NA 4 3 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL662884.4 6 32150495 32154373 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL662899.1 6 31686962 31714072 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 30 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL662899.2 6 31666102 31673546 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL669918.1 6 32813767 32838822 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 19 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL672043.1 1 46175486 46176478 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL672142.1 9 128941478 128957021 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL691442.1 1 155063748 155086807 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL713999.1 1 155169409 155187272 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 24 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL807752.6 9 137031241 137040436 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL807752.7 9 136977518 136985435 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL928654.3 14 105487199 105492267 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AL929554.1 9 137168854 137171984 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALAD 9 113386317 113401333 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALAS1 3 52198086 52214327 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALAS2 23 55009055 55031064 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALB 4 73397114 73421412 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALCAM 3 105366909 105576900 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH16A1 19 49453169 49471048 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH18A1 10 95605929 95656706 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH1A1 9 72900662 73080442 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH1A2 15 57953424 58497866 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 22 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH1A3 15 100877714 100916626 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH1B1 9 38392664 38398661 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH1L1 3 126103562 126197994 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH1L2 12 105019784 105084577 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH2 12 111766887 111817529 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH3A1 17 19737984 19748943 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH3A2 17 19648136 19677598 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH3B1 11 68008578 68029282 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH3B2 11 67662162 67681200 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH4A1 1 18871430 18902781 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH5A1 6 24494852 24537207 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH6A1 14 74056850 74084493 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH7A1 5 126531200 126595418 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH8A1 6 134917390 134950122 FALSE 493 -0.929955024876043 13 134918433 135189741 0.522719719214577 1 0 0.522719719214577 1 0 271308 1 3 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDH9A1 1 165662216 165698863 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 11 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDOA 16 30064164 30070457 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDOB 9 101420578 101449664 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALDOC 17 28573115 28577264 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG1 16 5033923 5087379 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG10 12 34022281 34029694 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG10B 12 38316578 38329728 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 8 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG11 13 52012398 52032171 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG12 22 49900229 49918458 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG13 23 111665811 111760649 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG14 1 94974407 95072945 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG1L 3 125929275 125937039 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG1L2 3 130081831 130113227 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG2 9 99216426 99221956 FALSE 685 1.99577760817062 113 99105189 99218340 0.593481580287395 17 NA 0.593481580287395 17 NA 113151 NA 2 6 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG3 3 184242301 184249548 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG5 13 36949775 37000261 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG6 1 63367575 63438562 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG8 11 78100936 78139660 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALG9 11 111782195 111871581 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALK 2 29192774 29921566 FALSE 125 1.42589235672174 95 29192965 29232110 0.593481580287395 11 NA 0.593481580287395 11 NA 39145 NA 1 85 12 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKAL1 8 52534037 52565507 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKAL2 2 279558 288851 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH1 14 77672404 77708020 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH2 12 109088188 109093631 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH3 11 43880811 43920266 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH4 7 102456238 102464876 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH5 17 18183078 18209954 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH6 19 36009120 36014239 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH7 19 6372433 6375251 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALKBH8 11 107502726 107565746 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALLC 2 3658195 3702671 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALMS1 2 73385758 73610793 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 62 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALOX12 17 6996065 7010736 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALOX12B 17 8072636 8087716 FALSE 1146 1.28214610375175 90 8072766 8087597 0.593481580287395 10 NA 0.593481580287395 10 NA 14831 NA 1 21 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALOX15 17 4630902 4642294 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALOX15B 17 8039017 8049134 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALOX5 10 45374176 45446119 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALOX5AP 13 30713478 30764426 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALOXE3 17 8095900 8119047 FALSE 1147 -0.887294624890009 13 8096639 8189086 0.522719719214577 1 0 0.522719719214577 1 0 92447 1 7 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALPG 2 232406843 232410714 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 11 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALPI 2 232456123 232460032 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALPK1 4 112285509 112442620 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 22 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALPK2 18 58481247 58628957 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 33 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALPK3 15 84816680 84873482 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALPL 1 21509372 21578412 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALPP 2 232378534 232382889 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALS2 2 201700554 201781189 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 38 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALS2CL 3 46668997 46693704 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALS2CR12 2 201288271 201357398 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALX1 12 85280107 85301784 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALX3 1 110059994 110070700 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALX4 11 44260440 44310166 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ALYREF 17 81887844 81891586 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMACR 5 33986178 34008108 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMBN 4 70592256 70607288 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMBP 9 114060127 114078472 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMBRA1 11 46396414 46594125 FALSE 775 -0.488983327470503 37 45935757 46543340 NA 2 NA NA 2 NA 607583 NA 6 25 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMD1 6 110874770 110895713 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMDHD1 12 95943293 95968716 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMDHD2 16 2520357 2531422 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMELX 23 11293413 11300761 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMER1 23 64185117 64205744 TRUE 1486 0.901493559933209 81 64182335 64268644 0.593481580287395 7 NA 0.593481580287395 7 NA 86309 NA 3 22 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMER2 13 25161684 25172288 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMER3 2 130755435 130768134 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMFR 16 56361452 56425538 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMH 19 2249309 2252073 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMHR2 12 53423855 53431534 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMIGO1 1 109504175 109509738 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMIGO2 12 47075707 47079951 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMIGO3 3 49716834 49719695 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMMECR1 23 110194186 110440233 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMMECR1L 2 127861630 127885922 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMN 14 102922656 102933596 FALSE 997 2.2098474170606 120 102777609 102929998 0.593481580287395 20 NA 0.593481580287395 20 NA 152389 NA 2 12 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMN1 12 31671137 31729174 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMOT 23 112774503 112840815 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMOTL1 11 94706431 94876753 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMOTL2 3 134355874 134375479 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMPD1 1 114673090 114695618 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMPD2 1 109616104 109632051 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMPD3 11 10308313 10507579 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMPH 7 38383704 38631567 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMT 3 49416775 49422753 FALSE 254 -0.617285049863544 28 49413119 49681966 NA 2 NA NA 2 NA 268847 NA 7 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMTN 4 70518540 70532742 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMY1A 1 103655290 103664554 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMY1B 1 103687415 103696680 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMY1C 1 103750406 103758690 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMY2A 1 103616811 103625780 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMY2B 1 103553815 103579534 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMZ1 7 2679522 2775500 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AMZ2 17 68247574 68257164 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 8 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC1 2 111611639 111884690 FALSE 166 -0.730078490902171 21 111769391 111880700 0.328777186374237 1 0 0.328777186374237 1 0 111309 1 1 42 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC10 4 144831908 145098541 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC11 17 81890790 81900991 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC13 3 134477706 134486716 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC15 11 72106378 72112780 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC16 10 72216000 72235860 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC2 9 137174784 137188549 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 17 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC4 4 25377213 25418498 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC5 12 121308245 121399896 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANAPC7 12 110372900 110403730 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANG 14 20684177 20698971 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGEL1 14 76786178 76826246 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGEL2 1 212992182 213015826 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPT1 8 107249482 107498055 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPT2 8 6499651 6563409 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPT4 20 869899 916317 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL1 1 178849705 178871052 FALSE 71 -0.473468583840393 37 177944644 179094120 NA 2 NA NA 2 NA 1149476 NA 8 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL2 9 127087332 127122883 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL3 1 62597487 62606159 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL4 19 8363289 8374373 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL5 11 101890674 101916522 FALSE 811 -0.646672265477621 25 101453039 102081219 0.276933305076759 1 0 0.276933305076759 1 0 628180 1 4 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL6 19 10092338 10102796 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL7 1 11189341 11195981 FALSE 3 0.104665361433966 61 11106543 11262554 0.315195151543259 5 NA 0.315195151543259 5 NA 156011 NA 2 6 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANGPTL8 19 11237450 11241943 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANHX 12 133218312 133236095 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANK1 8 41653220 41896762 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 51 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANK2 4 112818109 113383740 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 82 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANK3 10 60026298 60733490 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 82 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKAR 2 189674290 189761193 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 33 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKDD1A 15 64911902 64958700 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 13 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKDD1B 5 75611459 75671846 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKEF1 20 9986126 10058303 FALSE 1367 0.955791031289778 82 9532402 10049957 0.593481580287395 8 NA 0.593481580287395 8 NA 517555 NA 2 13 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKFN1 17 55882301 56511659 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKFY1 17 4163907 4263995 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKH 5 14704800 14871785 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKHD1 5 140401814 140539856 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 48 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKHD1-EIF4EBP3 5 140401908 140549569 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 52 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKIB1 7 92246234 92401384 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 22 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKK1 11 113387791 113400418 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKLE1 19 17281645 17287646 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 13 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKLE2 12 132725503 132761888 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKMY1 2 240479422 240569209 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 25 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKMY2 7 16599776 16645817 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRA2 5 73552335 73565686 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD1 10 90912096 90921276 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD10 13 110878540 110915069 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD11 16 89267619 89490561 TRUE 1127 1.46148699882111 94 89267651 89490435 0.593481580287395 11 1 0.593481580287395 11 1 222784 10 1 79 15 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD12 18 9136228 9285985 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD13A 12 109999186 110039763 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD13B 17 29589769 29614761 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD13C 1 70260588 70354734 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD13D 11 67288547 67302485 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD16 10 5861617 5889906 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD17 4 73073376 73258798 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 46 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD18A 9 38571358 38620660 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 21 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD18B 9 33524394 33573009 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 22 6 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD2 10 97572499 97583884 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD20A1 9 67859147 67902094 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD20A2 9 40223285 40266392 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD20A3 9 66106815 66153135 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD20A4 9 64369394 64413142 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 14 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD22 10 88822132 88851818 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD23 2 96824526 96857934 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD24 19 4183354 4224814 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD26 10 26991914 27100498 FALSE 711 0.984171415640886 82 27004470 27100385 0.593481580287395 8 NA 0.593481580287395 8 NA 95915 NA 1 47 8 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD27 19 32597007 32676597 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD28 3 15667236 15859771 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 32 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD29 18 23598926 23662885 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD30A 10 37125788 37384111 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 37 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD30B 18 14728272 14852738 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 41 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD30BL 2 132147591 132257969 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD31 5 75068275 75236878 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 38 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD33 12 51887960 51891664 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD33B 5 10564330 10657816 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD34A 1 145959442 145964582 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD34B 5 80556755 80570488 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD34C 15 79293285 79298235 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD35 1 145866560 145885866 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 20 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD36 2 97113496 97250199 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 70 12 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD36B 2 97492663 97589965 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD36C 2 95836919 95991831 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 77 15 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD37 4 185396021 185400628 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD39 2 96836611 96858095 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD40 17 50693190 50707924 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD40CL 17 50761029 50767557 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD42 11 83193739 83260694 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD44 2 196967017 197311173 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 29 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD45 1 173609561 173669862 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD46 8 100509752 100559784 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD49 11 94493629 94499583 FALSE 808 0.966628121201022 82 94415723 94493745 0.593481580287395 8 NA 0.593481580287395 8 NA 78022 NA 2 6 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD50 4 124664052 124712732 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD52 12 56237807 56258391 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD53 2 70978380 70985499 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD54 22 37830855 37849327 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD55 5 56099678 56233359 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD6 6 89433170 89633834 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD60 20 58218495 58228653 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD61 7 6031376 6036386 FALSE 520 -0.273341933736742 46 6006303 6387310 0.261157737158964 3 NA 0.261157737158964 3 NA 381007 NA 8 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD62 18 12093853 12129749 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 17 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD63 15 40281444 40282586 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD65 1 1418420 1421769 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD66 6 46746917 46759506 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD7 7 118214669 118496171 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKRD9 14 102501760 102509799 FALSE 996 -0.579401018683582 31 102193509 102726551 NA 2 NA NA 2 NA 533042 NA 7 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKS1A 6 34889265 35091413 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKS1B 12 98726457 99984654 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 38 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKS3 16 4696510 4734378 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 18 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKS4B 16 21233665 21253845 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKS6 9 98731329 98796965 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 21 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKUB1 3 149761100 149968385 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANKZF1 2 219229757 219236669 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANLN 7 36389806 36453791 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 27 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO1 11 70078302 70189528 FALSE 795 1.97939544348603 113 69641322 70088057 0.593481580287395 17 NA 0.593481580287395 17 NA 446735 NA 6 29 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO10 3 43354859 43691594 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO2 12 5531869 5946232 FALSE 834 0.228253228305157 64 4810260 5563608 0.593443012170704 4 NA 0.593443012170704 4 NA 753348 NA 6 31 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO3 11 26309599 26663288 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 34 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO4 12 100717526 101128641 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 26 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO5 11 21799934 22283357 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO6 12 45215987 45440404 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO7 2 241188509 241225377 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 25 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO8 19 17323223 17334829 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANO9 11 417933 442011 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANOS1 23 8528874 8732186 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANP32A 15 68778535 68820897 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANP32B 9 97983361 98015943 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANP32D 12 48472665 48473624 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANP32E 1 150218417 150236156 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANPEP 15 89784889 89815401 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 22 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANTXR1 2 69013178 69249327 FALSE 147 0.867370345443778 80 68822478 69181822 0.593481580287395 7 NA 0.593481580287395 7 NA 359344 NA 5 21 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANTXR2 4 79901149 80125454 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANTXRL 10 46286345 46330207 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 19 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA1 9 73151757 73170393 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA10 4 168092515 168187690 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA11 10 80150889 80205572 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA13 8 123680794 123737407 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA2 15 60347134 60402883 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 13 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA2R 5 43039081 43043170 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA3 4 78551519 78610451 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA4 2 69644425 69827100 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA5 4 121667955 121697113 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA6 5 151100712 151157882 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 25 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA7 10 73375101 73414076 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA8L1 10 46375627 46391784 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ANXA9 1 150982017 150995634 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AOAH 7 36512949 36724549 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AOC1 7 150824627 150861504 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AOC2 17 42844600 42850707 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AOC3 17 42851184 42858130 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AOX1 2 200585868 200677064 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 35 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000275.2 21 32578822 32612281 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000295.1 21 33229901 33297160 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000311.1 21 33584687 33931607 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 65 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000350.4 22 23862188 23895223 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000646.1 11 121024125 121113108 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 13 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000721.1 11 63974620 63988346 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000781.2 11 57387365 57424059 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000812.4 11 72105924 72109329 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000812.5 11 72080777 72110782 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 21 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP000944.2 11 65261928 65326543 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP001267.5 11 118401602 118482737 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 50 2 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP001273.2 11 93741664 93812378 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP001458.2 11 62649694 62665178 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP001781.2 11 111786286 111879425 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 25 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP001931.1 11 57742163 57793243 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP002373.1 11 114400682 114443932 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP002495.1 11 71865509 71928654 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP002512.3 11 56459221 56473352 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP002748.4 11 66509079 66533613 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 20 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP002884.3 11 112086903 112193805 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 28 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP002990.1 11 62559603 62591531 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP003108.2 11 61429220 61485822 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 22 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP003419.1 11 67351572 67373584 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1AR 4 112231737 112270047 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1B1 22 29327680 29423179 FALSE 1431 -0.769259292267371 18 29308534 29642163 0.387809979850725 1 0 0.387809979850725 1 0 333629 1 8 25 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1G1 16 71729000 71809201 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1G2 14 23559565 23568070 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1M1 19 16197578 16245907 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1M2 19 10572671 10587315 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1S1 7 101154400 101161596 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 5 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1S2 23 15825806 15854931 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP1S3 2 223751686 223838027 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP2A1 19 49766968 49807113 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP2A2 11 924894 1012245 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP2B1 17 35578046 35726409 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 21 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP2M1 3 184174689 184184091 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 14 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP2S1 19 46838136 46850992 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 6 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP3B1 5 78000525 78294755 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP3B2 15 82659281 82709914 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP3D1 19 2100988 2164468 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 37 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP3M1 10 74120255 74151063 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP3M2 8 42152946 42171673 FALSE 611 -0.755064063426123 18 42051997 42193139 0.387809979850725 1 0 0.387809979850725 1 0 141142 1 3 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP3S1 5 115841481 115914081 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP3S2 15 89830599 89894638 FALSE 1052 -0.427824936130558 37 89803513 90074115 NA 2 NA NA 2 NA 270602 NA 5 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP4B1 1 113894748 113905201 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP4E1 15 50908672 51005900 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP4M1 7 100101549 100110345 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP4S1 14 31025106 31096450 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP5B1 11 65775893 65780802 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 11 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP5M1 14 57268909 57298742 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP5S1 20 3820524 3828837 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AP5Z1 7 4775615 4794395 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APAF1 12 98645141 98735433 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APBA1 9 69427530 69672306 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APBA2 15 28884483 29118315 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APBA3 19 3750819 3761699 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APBB1 11 6395124 6419414 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APBB1IP 10 26438203 26567803 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APBB2 4 40810027 41216714 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APBB3 5 140558268 140564781 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APC 5 112707498 112846239 TRUE 389 1.39254480129206 93 112707431 112845879 0.593481580287395 11 NA 0.593481580287395 11 NA 138448 NA 2 72 12 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APC2 19 1446302 1473244 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 33 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APCDD1 18 10454628 10489948 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APCDD1L 20 58459101 58515131 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APCS 1 159587825 159588865 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APEH 3 49674002 49683963 FALSE 254 -0.617285049863544 28 49413119 49681966 NA 2 NA NA 2 NA 268847 NA 7 23 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APELA 4 164877004 164898965 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APEX1 14 20455191 20457772 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APEX2 23 55000357 55009057 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APH1A 1 150265399 150269580 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APH1B 15 63276018 63309126 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 API5 11 43311963 43344529 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APIP 11 34853094 34916499 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APLF 2 68467561 68655862 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APLN 23 129645259 129654937 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APLNR 11 57233577 57237314 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APLP1 19 35867899 35879791 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APLP2 11 130068147 130144811 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 19 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APMAP 20 24962925 24992979 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOA1 11 116835751 116837950 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOA2 1 161222292 161223631 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOA4 11 116820700 116823306 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOA5 11 116789367 116792420 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOB 2 21001429 21044073 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 70 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC1 12 7649400 7665903 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC2 6 41053304 41064511 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC3A 22 38952741 38992778 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC3B 22 38982347 38992804 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC3C 22 39014083 39020352 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC3D 22 39021113 39033276 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC3F 22 39040604 39053910 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC3G 22 39077005 39087743 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC3H 22 39097224 39104067 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBEC4 1 183646404 183653316 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOBR 16 28494649 28498970 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOC1 19 44914247 44919349 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOC2 19 44945982 44949565 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOC3 11 116829706 116833072 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOC4 19 44942238 44945496 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOC4-APOC2 19 44942238 44949565 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOD 3 195568702 195584205 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOE 19 44905754 44909393 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOF 12 56360569 56362823 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOH 17 66212033 66256525 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOL1 22 36253010 36267530 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOL2 22 36226203 36239954 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOL3 22 36140330 36166177 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOL4 22 36189124 36204840 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOL5 22 35717872 35729483 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOL6 22 35648395 35668409 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOLD1 12 12725917 12829975 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOM 6 31652416 31658210 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOO 23 23833353 23907934 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOOL 23 85003826 85093316 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APOPT1 14 103562962 103607523 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APP 21 25880550 26171128 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APPBP2 17 60443149 60526219 FALSE 1208 -0.274405632017478 46 59953065 60500374 0.261157737158964 3 NA 0.261157737158964 3 NA 547309 NA 7 14 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APPL1 3 57227726 57278105 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APPL2 12 105173296 105236238 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APRT 16 88809339 88811944 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 APTX 9 32972606 33025168 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP1 7 30911694 30925516 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP10 1 154321090 154325325 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP11 11 77589391 77610355 FALSE 804 1.53301766490883 98 77322178 77590086 0.593481580287395 12 NA 0.593481580287395 12 NA 267908 NA 3 5 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP12A 2 240691845 240698483 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP12B 2 240676418 240682906 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP2 12 49950741 49958881 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 6 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP3 9 33441154 33447633 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP4 18 26852038 26865818 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP5 12 49961870 49965681 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP6 12 49967194 49977139 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP7 9 33383179 33402682 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP8 16 25215731 25228940 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQP9 15 58138169 58185911 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AQR 15 34851782 34969839 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 36 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AR 23 67544032 67730619 FALSE 1488 2.32300792462345 121 66615999 67703126 0.593481580287395 22 NA 0.593481580287395 22 NA 1087127 NA 2 179 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARAF 23 47561100 47571920 FALSE 1475 1.53724251982047 98 47556283 47574028 0.593481580287395 12 NA 0.593481580287395 12 NA 17745 NA 2 23 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARAP1 11 72685069 72793599 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 45 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARAP2 4 35948221 36244509 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 37 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARAP3 5 141653401 141682221 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 35 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARC 8 142611044 142614472 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARCN1 11 118572390 118603033 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AREG 4 74445134 74455009 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AREL1 14 74653437 74713115 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARF1 1 228082660 228099212 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARF3 12 48935723 48957551 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARF4 3 57571363 57598220 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARF5 7 127588345 127591705 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARF6 14 49893092 49897054 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFGAP1 20 63272785 63289793 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFGAP2 11 47164299 47177125 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFGAP3 22 42796502 42858106 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 16 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFGEF1 8 67173511 67343677 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 48 0 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFGEF2 20 48921890 49036693 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 39 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFGEF3 6 138161921 138344663 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 47 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFIP1 4 152779937 152918463 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFIP2 11 6474683 6481479 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARFRP1 20 63698642 63708025 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARG1 6 131573144 131584332 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARG2 14 67619798 67651720 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARGFX 3 121570704 121586634 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARGLU1 13 106541673 106568164 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP1 11 46677080 46700615 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP10 4 147732063 148072780 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP11A 15 32615144 32639949 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP11B 15 30624494 30638805 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP12 10 31805404 31928876 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 21 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP15 2 143091362 143768352 FALSE 177 -0.992611125625102 11 142885392 144208701 0.593443012170704 1 0 0.593443012170704 1 0 1323309 1 3 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP17 16 24919385 25015666 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP18 6 129576132 129710225 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP19 10 97222173 97292673 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP19-SLIT1 10 97153045 97292637 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP20 11 110577042 110713189 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 24 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP21 10 24583609 24723668 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 39 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP22 10 48446034 48656265 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP23 17 38419280 38512392 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 32 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP24 4 85475114 86002670 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 16 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP25 2 68679601 68826833 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 12 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP26 5 142770377 143229011 FALSE 401 1.92805410531954 111 142314231 142873518 0.593481580287395 16 NA 0.593481580287395 16 NA 559287 NA 3 25 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP27 17 45393902 45434421 FALSE 1194 1.92905879442296 111 45263232 45396552 0.593481580287395 16 NA 0.593481580287395 16 NA 133320 NA 2 20 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP28 18 6729718 6915716 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 17 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP29 1 94148988 94275068 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP30 1 161046946 161069970 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP31 3 119294373 119420714 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP32 11 128965060 129279324 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 36 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP33 19 35774532 35788822 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP35 19 46918676 47005077 TRUE 1350 2.36339500894478 121 46850672 47004826 0.593481580287395 22 NA 0.593481580287395 22 NA 154154 NA 2 36 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP36 23 131058242 131089883 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP39 8 144529179 144605816 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 20 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP4 23 153907367 153934999 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 32 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP40 20 38601934 38651035 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 16 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP42 11 100687653 100993941 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 27 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP44 17 12789539 12991643 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP45 19 1065923 1086628 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 28 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP5 14 32076114 32159728 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP6 23 11137543 11665701 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP8 22 44752558 44862788 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 12 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGAP9 12 57472255 57488814 FALSE 889 1.19452668102255 87 57459909 57476074 0.593481580287395 9 NA 0.593481580287395 9 NA 16165 NA 3 24 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGDIA 17 81867721 81871406 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGDIB 12 14942017 14961728 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGDIG 16 268727 283010 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF1 19 41883161 41930150 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF10 8 1823976 1958641 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 32 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF10L 1 17539835 17697874 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 34 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF11 1 156934840 157045370 FALSE 65 -0.406384625980235 41 156886901 156948503 NA 2 NA NA 2 NA 61602 NA 3 44 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF12 11 120336914 120489936 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 44 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF15 17 8310241 8322516 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF16 1 3454426 3481113 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 17 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF17 11 73308289 73369388 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 37 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF18 19 7395113 7472477 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 24 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF19 1 16197854 16212609 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF2 1 155946851 156007070 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 28 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF25 12 57610180 57619379 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF26 3 154121003 154257827 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF28 5 73626158 73941993 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 43 10 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF3 3 56727418 57079329 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF33 2 38889841 38975449 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 22 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF35 7 144186083 144195655 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF37 5 149551947 149634968 FALSE 404 -0.510178414155637 34 149597850 150052115 NA 2 NA NA 2 NA 454265 NA 6 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF38 4 105552620 105708093 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF39 9 35658875 35675866 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF4 2 130836916 131047263 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF40 14 21070270 21090240 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 32 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF5 7 144355288 144380632 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF6 23 136665547 136782088 FALSE 1518 -0.532241026237508 31 136350124 136779443 NA 2 NA NA 2 NA 429319 NA 6 22 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF7 13 111114559 111305737 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 28 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARHGEF9 23 63634967 63809274 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID1A 1 26693236 26782110 TRUE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 53 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID1B 6 156776020 157210779 TRUE 509 1.55666484401493 98 156776043 157215803 0.593481580287395 12 NA 0.593481580287395 12 NA 439760 NA 1 102 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID2 12 45729665 45908040 TRUE 868 0.174954455965041 63 45724744 45849765 0.54220702508464 4 NA 0.54220702508464 4 NA 125021 NA 1 53 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID3A 19 925781 975934 TRUE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID3B 15 74541177 74598131 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID3C 9 34621379 34628107 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID4A 14 58298385 58373887 TRUE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID4B 1 235131634 235328219 TRUE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 41 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID5A 2 96536743 96552638 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARID5B 10 61901300 62096944 TRUE 721 0.490419470771497 71 61901737 62091003 0.593481580287395 5 NA 0.593481580287395 5 NA 189266 NA 1 49 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARIH1 15 72474326 72602985 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARIH2 3 48918821 48986382 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARIH2OS 3 48917782 48919385 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL1 12 101393120 101407820 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL10 5 176365468 176401865 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL11 13 49628299 49633872 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL13A 23 100969708 100990829 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL13B 3 93980139 94055668 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL14 3 160677159 160678452 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL14EP 11 30323051 30338227 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL14EPL 5 116032324 116060118 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL15 5 53883945 54310582 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL16 17 81681174 81683924 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL17A 17 46516702 46579682 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL17B 17 46274784 46361797 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL2 11 65014113 65022184 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL2-SNX15 11 65014182 65040570 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL2BP 16 57245098 57253635 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL3 10 102673731 102714407 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL4A 7 12686856 12690934 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL4C 2 234493041 234497053 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL4D 17 43398959 43401137 FALSE 1191 -0.515679675839481 34 43146165 43526482 NA 2 NA NA 2 NA 380317 NA 6 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL5A 2 151788984 151828492 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL5B 10 18659405 18681639 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL5C 17 39156894 39167484 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL6 3 97764521 97801242 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL6IP1 16 18791667 18801678 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL6IP4 12 122980060 122982913 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL6IP5 3 69084944 69106066 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL6IP6 2 152717893 152761253 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL8A 1 202133404 202144743 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL8B 3 5122220 5180912 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARL9 4 56505209 56525481 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC1 8 65602456 65634217 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC10 7 103074881 103099764 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC12 6 35737032 35749079 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC2 6 108848416 108974472 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC3 10 22928024 23038523 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC4 10 27812164 27999048 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC5 16 31458080 31467166 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC6 19 19033575 19060311 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC7 17 75109952 75130265 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC8 3 138187248 138298389 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMC9 2 231198546 231374837 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMCX1 23 101550531 101554700 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMCX2 23 101655281 101659891 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMCX3 23 101622797 101627843 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMCX4 23 101418287 101533459 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 25 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMCX5 23 102599168 102604159 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMCX6 23 101615118 101618001 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMH1 1 44674692 44725591 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMH2 6 24797321 24798889 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMH3 10 101845599 102056193 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 25 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMH4 14 57999735 58298139 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 38 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMS2 10 122454653 122457352 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 3 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARMT1 6 151452258 151470101 FALSE 506 -0.933338902263755 13 151405214 151686189 0.522719719214577 1 0 0.522719719214577 1 0 280975 1 4 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARNT 1 150809705 150876768 FALSE 55 -0.603676872005541 28 150622798 150876627 NA 2 NA NA 2 NA 253829 NA 6 22 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARNT2 15 80404350 80597937 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARNTL 11 13276652 13387266 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARNTL2 12 27332854 27425289 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC1A 7 99325910 99366262 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC1B 7 99374249 99394816 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC2 2 218217094 218254356 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC3 12 110434825 110450422 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC4 3 9792495 9807726 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC4-TTLL3 3 9793082 9835401 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 22 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC5 1 183620846 183635757 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPC5L 9 124862130 124877733 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPIN 15 89895006 89912956 FALSE 1052 -0.427824936130558 37 89803513 90074115 NA 2 NA NA 2 NA 270602 NA 5 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPP19 15 52547045 52569883 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARPP21 3 35638945 35794496 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARR3 23 70268305 70281840 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARRB1 11 75264182 75351705 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARRB2 17 4710489 4721499 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARRDC1 9 137605654 137615360 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARRDC2 19 18001132 18014102 FALSE 1318 -0.547059940466149 31 17859952 18149709 NA 2 NA NA 2 NA 289757 NA 7 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARRDC3 5 91368724 91383359 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARRDC4 15 97960698 97973838 FALSE 1059 -0.999534667247782 11 93072984 98485893 0.593443012170704 1 0 0.593443012170704 1 0 5412909 1 6 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARRDC5 19 4890437 4902867 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSA 22 50622754 50628173 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSB 5 78777209 78986087 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSD 23 2903970 2929351 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSE 23 2934632 2968310 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSF 23 3041471 3112726 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSG 17 68259182 68422731 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 21 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSH 23 3006613 3033571 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSI 5 150296343 150339307 FALSE 406 -0.544352612252152 31 150166967 150399004 NA 2 NA NA 2 NA 232037 NA 5 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSJ 4 113900284 113979727 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARSK 5 95555074 95605064 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ART1 11 3645128 3664416 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ART3 4 76011184 76112802 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ART4 12 14825569 14843533 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ART5 11 3638503 3642316 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARTN 1 43933320 43937241 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARV1 1 230978981 231000595 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARVCF 22 19969896 20016808 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ARX 23 25003694 25016420 FALSE 1460 -0.698539880071462 25 24465570 25007193 0.276933305076759 1 0 0.276933305076759 1 0 541623 1 4 9 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AS3MT 10 102869516 102901899 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASAH1 8 18055992 18084998 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 16 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASAH2 10 50182778 50248610 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASAH2B 10 50739318 50816495 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASAP1 8 130052104 130443660 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 33 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASAP2 2 9206765 9405683 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 29 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASAP3 1 23428563 23484568 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB1 2 238426742 238452250 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB10 7 151175698 151187832 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB11 23 15281697 15315656 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB12 23 64224196 64230631 FALSE 1486 0.901493559933209 81 64182335 64268644 0.593481580287395 7 NA 0.593481580287395 7 NA 86309 NA 3 5 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB13 10 5638867 5666595 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB14 3 57268347 57292682 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB15 7 123567010 123639481 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB16 17 44170447 44179083 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB17 1 75918873 75932431 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB18 2 236194872 236264409 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB2 14 93934153 93976791 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB3 2 53532672 53787610 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB4 7 95478444 95540232 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB5 4 176213673 176277571 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB6 9 129634604 129642169 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB7 15 100602534 100651705 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB8 12 48147788 48181213 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASB9 23 15235288 15270467 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCC1 10 72096032 72217134 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCC2 22 29788608 29838304 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCC3 6 100508194 100881372 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 47 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCL1 12 102957686 102960516 FALSE 907 -0.595500763421402 28 102843745 103688153 NA 2 NA NA 2 NA 844408 NA 4 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCL2 11 2268495 2270952 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCL3 11 8937579 8938211 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 3 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCL4 12 107774385 107776644 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASCL5 1 201113953 201127184 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASF1A 6 118894220 118909167 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASF1B 19 14119509 14136956 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASGR1 17 7173431 7179564 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASGR2 17 7101322 7115700 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASH1L 1 155335268 155562807 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 48 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASH2L 8 38105242 38144076 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASIC1 12 50057548 50083611 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASIC2 17 33013087 34174964 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASIC3 7 151048292 151052756 FALSE 574 -0.383372083232003 41 150947860 151064227 NA 2 NA NA 2 NA 116367 NA 7 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASIC4 2 219514170 219538772 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASIC5 4 155829729 155866273 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASIP 20 34194569 34269344 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASL 7 66075798 66093558 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASNA1 19 12737139 12748323 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASNS 7 97852118 97872542 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASNSD1 2 189661385 189670831 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPA 17 3472374 3503419 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPDH 19 50511600 50514690 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPG 14 104085679 104115581 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPH 8 61500556 61714640 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 33 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPHD1 16 29900375 29919864 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPHD2 22 26429273 26445015 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPM 1 197084128 197146694 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 56 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPN 9 92456205 92482506 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPRV1 2 69960089 69962265 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASPSCR1 17 81976807 82017406 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 19 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASRGL1 11 62337448 62393412 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASS1 9 130444929 130501274 FALSE 696 -0.58350626283648 28 130285267 130703742 NA 2 NA NA 2 NA 418475 NA 5 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASTE1 3 131013875 131027649 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASTL 2 96123850 96138436 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 10 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASTN1 1 176857302 177164973 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASTN2 9 116425225 117415070 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 35 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASXL1 20 32358330 32439319 TRUE 1373 0.921004845427493 81 32358286 32833703 0.593481580287395 7 NA 0.593481580287395 7 NA 475417 NA 7 45 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASXL2 2 25733753 25878516 TRUE 118 2.59605316158813 125 25737887 25742071 0.593481580287395 27 NA 0.593481580287395 27 NA 4184 NA 1 50 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASXL3 18 33578233 33751192 FALSE 1249 -1.21939637529209 5 32938021 33734280 0.40635440857188 0 0 0.40635440857188 0 0 796259 0 2 33 2 TRUE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ASZ1 7 117363222 117428123 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAD1 10 87751512 87841343 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAD2 8 123319850 123416350 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAD2B 2 23748664 23927114 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAD3A 1 1512151 1534687 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAD3B 1 1471769 1497848 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAD3C 1 1449689 1470158 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAD5 17 30831970 30895869 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 33 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATAT1 6 30626842 30646823 FALSE 442 -0.707992332207312 21 30547554 30653233 0.328777186374237 1 0 0.328777186374237 1 0 105679 1 8 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATCAY 19 3879864 3928079 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATE1 10 121740421 121928801 FALSE 748 2.31769322329608 121 121588875 121790195 0.593481580287395 22 NA 0.593481580287395 22 NA 201320 NA 2 15 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF1 12 50763710 50821122 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF2 2 175072250 175168382 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF3 1 212565334 212620777 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF4 22 39519695 39522685 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF5 19 49928702 49933935 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF6 1 161766294 161964070 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF6B 6 32115264 32128253 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF7 12 53507856 53626410 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF7IP 12 14365632 14502935 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 25 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATF7IP2 16 10326434 10483638 FALSE 1084 2.17925129876523 118 9748426 10431119 0.593481580287395 20 NA 0.593481580287395 20 NA 682693 NA 2 14 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG10 5 81972025 82276857 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG101 12 52069246 52077494 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG12 5 115828200 115841858 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG13 11 46617527 46674818 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG14 14 55366392 55411858 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG16L1 2 233210051 233295674 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG16L2 11 72814308 72843674 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 25 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG2A 11 64894546 64917248 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 45 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG2B 14 96279202 96363870 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 46 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG3 3 112532509 112562046 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG4A 23 108091668 108154671 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 13 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG4B 2 241637213 241673857 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG4C 1 62784135 62865513 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG4D 19 10543895 10553418 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG5 6 106045423 106325791 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 40 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG7 3 11272309 11557665 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG9A 2 219219380 219229717 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATG9B 7 151012209 151024499 FALSE 574 -0.383372083232003 41 150947860 151064227 NA 2 NA NA 2 NA 116367 NA 7 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATIC 2 215311817 215349773 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATL1 14 50532509 50633068 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATL2 2 38294880 38377285 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATL3 11 63624087 63671921 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATM 11 108222484 108369102 TRUE 814 1.43922433200492 95 108223106 108368901 0.593481580287395 11 NA 0.593481580287395 11 NA 145795 NA 2 130 14 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATMIN 16 81035847 81047358 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATN1 12 6924463 6942321 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 18 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATOH1 4 93828753 93830964 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATOH7 10 68230624 68232103 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATOH8 2 85751344 85788066 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATOX1 5 151742316 151772532 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP10A 15 25677273 25865172 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 29 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP10B 5 160563120 160852214 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 28 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP10D 4 47485288 47593486 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 30 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP11A 13 112690329 112887168 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 32 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP11B 3 182793500 182921635 FALSE 299 -0.776008611990231 18 182793806 182918037 0.387809979850725 1 0 0.387809979850725 1 0 124231 1 1 30 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP11C 23 139726346 139945276 FALSE 1520 -0.880146503545695 13 138739250 139832175 0.522719719214577 1 0 0.522719719214577 1 0 1092925 1 4 34 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP12A 13 24680411 24712493 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP13A1 19 19645198 19663693 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP13A2 1 16985958 17011928 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP13A3 3 194402672 194498364 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 31 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP13A4 3 193402077 193593111 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 30 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP13A5 3 193274790 193378843 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 30 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1A1 1 116372668 116410261 FALSE 41 -0.81063338900568 15 115664208 116388119 0.449390955025597 1 0 0.449390955025597 1 0 723911 1 6 26 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1A2 1 160115759 160143591 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1A3 19 41966582 41997497 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 25 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1A4 1 160151570 160186977 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1B1 1 169105697 169132722 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1B2 17 7646627 7657768 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 7 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1B3 3 141876124 141926514 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP1B4 23 120362085 120383249 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP23 12 57906039 57959148 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2A1 16 28878405 28904509 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 27 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2A2 12 110280756 110351093 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2A3 17 3923870 3964464 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 25 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2B1 12 89588049 89709300 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 25 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2B2 3 10324023 10708007 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 31 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2B3 23 153517676 153582939 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 25 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2B4 1 203626561 203744081 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2C1 3 130850595 131016712 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 32 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP2C2 16 84368527 84464187 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 30 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP4A 19 35550043 35563658 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP4B 13 113648804 113658186 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5F1A 18 46080248 46104334 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5F1B 12 56638175 56646068 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5F1C 10 7788129 7807815 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5F1D 19 1241746 1244826 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5F1E 20 59025467 59032382 FALSE 1396 -0.20354273420644 52 58981312 59194662 0.426118104232275 3 NA 0.426118104232275 3 NA 213350 NA 6 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5IF1 1 28236109 28246906 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MC1 17 48892765 48895871 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MC2 12 53632726 53677408 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MC3 2 175176258 175184607 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MD 10 103389041 103396492 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5ME 4 672436 674338 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MF 7 99448475 99466331 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MF-PTCD1 7 99419749 99466197 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 23 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MG 11 118401154 118431496 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MGL 22 42639803 42640601 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5MPL 14 103912288 103928269 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5PB 1 111448864 111462773 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5PD 17 75038863 75046985 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5PF 21 25716503 25735673 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5PO 21 33903453 33915980 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP5S 14 50312326 50335558 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6AP1 23 154428632 154436516 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6AP1L 5 82279462 82386977 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6AP2 23 40579372 40606848 FALSE 1468 -0.326446288418871 44 40143046 41232371 0.18904974046126 3 NA 0.18904974046126 3 NA 1089325 NA 6 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0A1 17 42458844 42522611 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0A2 12 123712318 123761755 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0A4 7 138706294 138799560 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0B 1 43974487 43978295 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0C 16 2513870 2520218 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0D1 16 67438014 67481237 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0D2 8 85987323 86154228 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0E1 5 172983757 173035445 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V0E2 7 149872968 149891204 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1A 3 113747019 113812056 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1B1 2 70935868 70965431 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1B2 8 20197367 20226819 TRUE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1C1 8 103021063 103073051 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1C2 2 10721100 10785110 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1D 14 67294371 67360265 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1E1 22 17592136 17628818 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1E2 2 46490750 46542557 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1F 7 128862826 128865844 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1FNB 7 128866308 128872044 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1G1 9 114587746 114598373 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1G2 6 31544462 31548427 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1G2-DDX39B 6 31530219 31546608 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 14 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1G3 1 198523222 198540945 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP6V1H 8 53715557 53843558 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP7A 23 77910656 78050395 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP7B 13 51930436 52012125 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 28 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP8A1 4 42408373 42657105 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 38 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP8A2 13 25372071 26025851 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 37 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP8B1 18 57646426 57803315 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP8B2 1 154325553 154351307 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 31 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP8B3 19 1782075 1812276 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 32 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP8B4 15 49858238 50182817 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 33 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP9A 20 51596514 51768634 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 29 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATP9B 18 79069285 79378287 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 31 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATPAF1 1 46632737 46673867 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATPAF2 17 17977409 18039209 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATR 3 142449235 142578826 TRUE 292 0.756491793381211 78 142449384 142578745 0.593481580287395 6 NA 0.593481580287395 6 NA 129361 NA 1 61 8 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATRAID 2 27212027 27217178 FALSE 123 -0.120982022404975 54 27204482 27258784 0.569455701337318 3 NA 0.569455701337318 3 NA 54302 NA 4 7 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATRIP 3 48446710 48467645 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATRN 20 3471040 3651122 FALSE 1364 -0.857765548893226 15 3238102 3660233 0.449390955025597 1 0 0.449390955025597 1 0 422131 1 4 31 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATRNL1 10 115093365 115948992 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 32 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATRX 23 77504878 77786233 TRUE 1496 1.65897767600261 102 77505002 77786243 0.593481580287395 13 NA 0.593481580287395 13 NA 281241 NA 1 75 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN1 6 16299112 16761491 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN10 22 45671798 45845307 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN1L 16 71845991 71885268 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN2 12 111443485 111599676 TRUE 912 0.916334203900635 81 111347634 111447046 0.593481580287395 7 NA 0.593481580287395 7 NA 99412 NA 4 49 4 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN2L 16 28823035 28837237 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN3 14 92044496 92106625 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN3L 23 13318236 13320399 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN7 3 63864557 64003462 FALSE 263 -0.35964030579044 41 62532938 63864622 NA 2 NA NA 2 NA 1331684 NA 6 38 5 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN7L1 7 105605067 105876604 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN7L2 1 109483479 109492804 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN7L3 17 44191805 44200113 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ATXN7L3B 12 74537827 74545430 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AUH 9 91213815 91361913 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AUNIP 1 25831913 25859458 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AUP1 2 74526645 74529939 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AURKA 20 56369389 56392337 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AURKAIP1 1 1373730 1375495 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AURKB 17 8204733 8210600 FALSE 1148 1.28436448129032 90 8189464 8210605 0.593481580287395 10 NA 0.593481580287395 10 NA 21141 NA 2 10 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AURKC 19 57230802 57235548 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AUTS2 7 69598296 70793495 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVEN 15 33866227 34039176 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVIL 12 57797376 57818704 FALSE 894 -0.430411211949774 37 57767016 57809571 NA 2 NA NA 2 NA 42555 NA 6 20 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVL9 7 32495426 32588721 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 19 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVP 20 3082556 3084724 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVPI1 10 97677424 97687323 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVPR1A 12 63142759 63150942 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVPR1B 1 206109692 206117699 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AVPR2 23 153902531 153907166 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AWAT1 23 70234655 70240627 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AWAT2 23 70040542 70049938 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AXDND1 1 179365720 179554735 FALSE 74 -0.589588184480294 28 179302743 179846780 NA 2 NA NA 2 NA 544037 NA 6 29 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AXIN1 16 287440 352673 TRUE 1063 1.21623827696682 87 286916 314670 0.593481580287395 9 NA 0.593481580287395 9 NA 27754 NA 2 20 5 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AXIN2 17 65528563 65561647 TRUE 1219 1.76982503049262 105 65528767 65561575 0.593481580287395 14 NA 0.593481580287395 14 NA 32808 NA 2 27 7 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AXL 19 41219203 41261766 FALSE 1337 1.09796148315141 84 41206115 41261743 0.593481580287395 9 NA 0.593481580287395 9 NA 55628 NA 2 32 5 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AZGP1 7 99966720 99976157 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AZI2 3 28315003 28349127 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AZIN1 8 102826357 102893864 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AZIN2 1 33081104 33120530 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 AZU1 19 825097 832018 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 6 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B2M 15 44711487 44718877 TRUE 1022 2.32420835835547 121 44706371 44718941 0.593481580287395 22 NA 0.593481580287395 22 NA 12570 NA 2 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GALNT1 3 161083883 161105384 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GALNT2 1 235449923 235504481 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GALT1 2 167868948 167874041 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GALT2 1 193179045 193186654 FALSE 77 0.164394122642393 63 193069139 193236365 0.54220702508464 4 NA 0.54220702508464 4 NA 167226 NA 4 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GALT4 6 33277132 33284832 FALSE 457 -0.585863588832874 28 33264074 33313388 NA 2 NA NA 2 NA 49314 NA 7 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GALT5 21 39556442 39673137 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GALT6 1 1232226 1235041 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GAT1 11 134378504 134411918 FALSE 826 -0.433746737716262 37 134347444 134387705 NA 2 NA NA 2 NA 40261 NA 2 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GAT2 6 70856679 70957038 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GAT3 11 62615296 62622175 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GLCT 13 31199936 31332276 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT2 2 62196113 62224731 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT3 19 17794828 17813082 FALSE 1316 -0.361533453731665 41 17787741 17824797 NA 2 NA NA 2 NA 37056 NA 4 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT4 12 122203543 122208952 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT5 3 183253244 183298504 FALSE 302 -0.798113066557288 18 183015527 183427874 0.387809979850725 1 0 0.387809979850725 1 0 412347 1 4 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT6 11 77034398 77041973 FALSE 803 -0.341739698901511 44 76796634 77285099 0.18904974046126 3 NA 0.18904974046126 3 NA 488465 NA 7 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT7 2 231395543 231401164 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT8 19 41425359 41428730 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNT9 16 67148105 67151214 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B3GNTL1 17 82942155 83051810 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALNT1 12 57623410 57633355 FALSE 891 2.32702691896063 121 57623111 57633141 0.593481580287395 22 NA 0.593481580287395 22 NA 10030 NA 2 32 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALNT2 17 49132460 49176840 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 12 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALNT3 12 460364 563509 FALSE 829 -0.407714329256422 41 409362 908739 NA 2 NA NA 2 NA 499377 NA 4 24 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALNT4 11 369796 382116 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALT1 9 33104082 33167356 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALT2 1 43978943 43991170 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALT3 1 161171310 161177968 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALT4 3 119211732 119241103 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALT5 20 49632945 49713878 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALT6 18 31622247 31685836 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GALT7 5 177600100 177610347 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B4GAT1 11 66345372 66347692 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B9D1 17 19337554 19378193 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 B9D2 19 41354421 41364173 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAALC 8 103140710 103230305 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAAT 9 101360417 101383519 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BABAM1 19 17267350 17281249 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BABAM2 2 27889941 28338901 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BACE1 11 117285207 117316259 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BACE2 21 41167801 41282518 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BACH1 21 29194071 29630751 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BACH2 6 89926529 90296908 TRUE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAD 11 64269830 64284704 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAG1 9 33247820 33264720 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAG2 6 57172326 57189833 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAG3 10 119651370 119677819 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAG4 8 38176533 38213301 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAG5 14 103556544 103562831 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAG6 6 31639028 31652705 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 27 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAHCC1 17 81395475 81466332 FALSE 1239 -0.201773157309635 52 81251292 81460363 0.426118104232275 3 NA 0.426118104232275 3 NA 209071 NA 3 43 5 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAHD1 15 40439721 40468242 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAIAP2 17 81035122 81117432 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAIAP2L1 7 98291651 98401068 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 16 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAIAP2L2 22 38084889 38110670 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAIAP3 16 1333601 1349441 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 31 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAK1 6 33572547 33580293 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAMBI 10 28677342 28682939 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BANF1 11 66002079 66004149 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BANF2 20 17693672 17735871 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BANK1 4 101411286 102074812 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 19 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BANP 16 87949244 88077318 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAP1 3 52401013 52410350 TRUE 259 1.0569035733277 83 52400149 52410974 0.593481580287395 8 NA 0.593481580287395 8 NA 10825 NA 3 28 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BARD1 2 214725646 214809711 TRUE 212 2.13904336035506 118 214725858 214752526 0.593481580287395 19 NA 0.593481580287395 19 NA 26668 NA 1 37 11 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BARHL1 9 132582185 132590266 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BARHL2 1 90711539 90717237 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BARX1 9 93951622 93955372 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BARX2 11 129375940 129452279 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BASP1 5 17065598 17276843 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BATF 14 75522425 75547015 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BATF2 11 64987943 64997045 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BATF3 1 212686418 212699985 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAX 19 48954815 48961798 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAZ1A 14 34752731 34875647 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAZ1B 7 73440398 73522278 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAZ2A 12 56595596 56636816 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 37 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BAZ2B 2 159318979 159616692 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 46 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBC3 19 47220822 47232766 TRUE 1352 1.4524525099988 95 47220914 47260837 0.593481580287395 11 NA 0.593481580287395 11 NA 39923 NA 2 9 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBIP1 10 110898730 110919274 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBOF1 14 74019353 74082863 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 27 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBOX1 11 27040725 27127809 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS1 11 66510606 66533627 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS10 12 76344474 76348442 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS12 4 122732702 122744943 FALSE 352 -0.689691915417127 25 121839741 122741842 0.276933305076759 1 0 0.276933305076759 1 0 902101 1 7 9 4 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS2 16 56466836 56520283 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 27 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS4 15 72686179 72738476 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS5 2 169479178 169506655 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS7 4 121824440 121870497 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 19 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBS9 7 33129244 33606068 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BBX 3 107522936 107811324 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAM 19 44809059 44821421 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAN 1 156641390 156659532 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAP29 7 107579977 107629170 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAP31 23 153700492 153724746 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAR1 16 75228187 75268053 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAR3 1 93561786 93847150 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAS1 20 53936777 54070594 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAS2 1 114567557 114581639 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAS3 17 60677453 61392838 FALSE 1210 -0.283500652137152 46 60671397 61480154 0.261157737158964 3 NA 0.261157737158964 3 NA 808757 NA 3 28 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAS4 20 50794894 50882676 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAT1 12 24810022 24949459 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCAT2 19 48795062 48811029 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCCIP 10 125823546 125853695 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCDIN3D 12 49836039 49843129 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCHE 3 165772904 165837472 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCKDHA 19 41397460 41425005 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCKDHB 6 80106647 80346270 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCKDK 16 31106107 31112791 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL10 1 85265776 85276904 TRUE 32 1.6379785328931 100 85259367 85276563 0.593481580287395 13 NA 0.593481580287395 13 NA 17196 NA 2 12 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL11A 2 60450520 60555154 FALSE 139 1.11141073584028 84 58159300 60546292 0.593481580287395 9 NA 0.593481580287395 9 NA 2386992 NA 3 13 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL11B 14 99169287 99271524 TRUE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2 18 63123346 63320128 FALSE 1264 2.7474748899954 127 62978646 63319972 0.593481580287395 30 NA 0.593481580287395 30 NA 341326 NA 2 44 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2A1 15 79960889 79971446 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L1 20 31664452 31723989 FALSE 1371 2.7261691453309 127 31664445 31723972 0.593481580287395 29 NA 0.593481580287395 29 NA 59527 NA 1 14 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L10 15 52109263 52112775 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L11 2 111119378 111168447 TRUE 165 2.23657966180453 120 111092938 111168319 0.593481580287395 20 NA 0.593481580287395 20 NA 75381 NA 2 29 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L12 19 49665142 49673916 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L13 22 17628855 17730855 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L14 12 12049844 12211084 FALSE 852 -0.515807943708335 34 12079259 12714091 NA 2 NA NA 2 NA 634832 NA 7 32 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L15 1 113878168 113887547 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L2 14 23298790 23311759 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 20 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL2L2-PABPN1 14 23306835 23325369 FALSE 969 2.63284172411721 125 23307037 23321834 0.593481580287395 27 NA 0.593481580287395 27 NA 14797 NA 3 24 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL3 19 44747705 44760044 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL6 3 187721377 187745727 FALSE 313 2.02687332003754 113 187721470 187745483 0.593481580287395 18 NA 0.593481580287395 18 NA 24013 NA 1 21 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL6B 17 7023020 7030290 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL7A 12 122019422 122062044 FALSE 928 2.91851586618136 131 122019673 122061891 0.593481580287395 34 NA 0.593481580287395 34 NA 42218 NA 1 21 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL7B 7 73536356 73558002 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL7C 16 30833626 30894960 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL9 1 147541412 147626216 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCL9L 11 118893875 118925608 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 25 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCLAF1 6 136256627 136289851 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCLAF3 23 19912860 19970298 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCO1 16 81238448 81291142 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCO2 11 112175467 112224699 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCOR 23 40049815 40177329 TRUE 1467 1.60015810765193 100 38805033 40113593 0.593481580287395 13 NA 0.593481580287395 13 NA 1308560 NA 2 50 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCORL1 23 129981107 130058083 TRUE 1513 1.62221166795895 100 129921240 130057911 0.593481580287395 13 NA 0.593481580287395 13 NA 136671 NA 2 45 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCR 22 23179704 23318037 FALSE 1423 1.44629255658177 94 23180482 23317394 0.593481580287395 11 2 0.593481580287395 11 2 136912 9 1 147 25 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BCS1L 2 218658764 218663443 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BDH1 3 197509783 197573323 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 7 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BDH2 4 103079435 103099883 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BDKRB1 14 96255824 96268967 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BDKRB2 14 96204679 96244166 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BDNF 11 27654893 27722058 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BDP1 5 71455615 71567820 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 52 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEAN1 16 66427297 66493529 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BECN1 17 42810134 42833350 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BECN2 1 241957767 241959062 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 5 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEGAIN 14 100537147 100587413 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEND2 23 18162931 18220883 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEND3 6 107065182 107115269 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEND4 4 42110938 42152878 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEND5 1 48727523 48776969 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEND6 6 56955126 57027342 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEND7 10 13438484 13528974 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEST1 11 61949821 61965515 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEST2 19 12751702 12758458 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEST3 12 69643360 69699476 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEST4 1 44783585 44787705 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BET1 7 93962762 94004382 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BET1L 11 167784 207428 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEX1 23 103062651 103064240 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEX2 23 103309346 103311046 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEX3 23 103376340 103378077 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEX4 23 103215092 103217246 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BEX5 23 102153708 102156057 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BFAR 16 14632815 14669236 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BFSP1 20 17493905 17569220 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BFSP2 3 133399995 133475222 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BGLAP 1 156241962 156243321 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BGN 23 153494939 153509554 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 8 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHLHA15 7 98211427 98212979 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHLHA9 17 1270559 1271460 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHLHB9 23 102720688 102753540 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHLHE22 8 64580367 64583628 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHLHE23 20 63005927 63007035 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHLHE40 3 4979116 4985323 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHLHE41 12 26120026 26125127 FALSE 860 -0.331371321454595 44 25251971 26556343 0.18904974046126 3 NA 0.18904974046126 3 NA 1304372 NA 5 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHMG1 19 45733251 45764534 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHMT 5 79111779 79132290 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BHMT2 5 79069717 79089466 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BICC1 10 58513140 58831437 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BICD1 12 32106835 32383633 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BICD2 9 92711363 92764812 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BICDL1 12 119989869 120094494 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BICDL2 16 3027682 3036926 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BICRA 19 47608196 47703277 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BICRAL 6 42746958 42868560 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BID 22 17734138 17774770 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIK 22 43110748 43129712 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIN1 2 127048027 127107355 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 22 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIN2 12 51281038 51324668 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIN3 8 22620418 22669148 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIRC2 11 102347211 102378670 FALSE 812 1.94046960871715 111 102083149 102350819 0.593481580287395 16 NA 0.593481580287395 16 NA 267670 NA 4 12 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIRC3 11 102317450 102339403 FALSE 812 1.94046960871715 111 102083149 102350819 0.593481580287395 16 NA 0.593481580287395 16 NA 267670 NA 4 31 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIRC5 17 78214186 78225636 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIRC6 2 32357028 32618899 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 89 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIRC7 20 63235883 63240507 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIRC8 19 53289601 53291626 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIVM 13 102799049 102841535 FALSE 955 -0.955371764625064 11 102750415 102839799 0.593443012170704 1 0 0.593443012170704 1 0 89384 1 6 12 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BIVM-ERCC5 13 102799110 102875994 FALSE 955 -0.955371764625064 11 102750415 102839799 0.593443012170704 1 0 0.593443012170704 1 0 89384 1 6 45 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLCAP 20 37492472 37527931 FALSE 1375 1.88390008373875 109 37316354 37519121 0.593481580287395 16 NA 0.593481580287395 16 NA 202767 NA 3 5 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLID 11 122115354 122116215 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLK 8 11486894 11564604 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLM 15 90717327 90816165 TRUE 1056 0.0480309521361265 60 90717402 90913593 0.593443012170704 3 NA 0.593443012170704 3 NA 196191 NA 4 39 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLMH 17 30248195 30292056 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLNK 10 96191702 96271587 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S1 12 55716037 55720087 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S1-RDH5 12 55716036 55724703 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S2 10 100273280 100286712 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S3 19 45178745 45181801 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S4 4 6716055 6717671 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S5 6 8013567 8064414 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S5-TXNDC5 6 7881522 8064364 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLOC1S6 15 45587123 45615999 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLVRA 7 43758680 43807342 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLVRB 19 40447765 40465840 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BLZF1 1 169367970 169396540 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMF 15 40087890 40108892 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMI1 10 22321211 22331484 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP1 8 22164736 22212326 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP10 2 68865481 68871517 FALSE 147 0.867370345443778 80 68822478 69181822 0.593481580287395 7 NA 0.593481580287395 7 NA 359344 NA 5 6 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP15 23 50910784 50916607 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP2 20 6767664 6780280 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP2K 4 78776342 78916372 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP3 4 81030965 81057531 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP4 14 53949736 53958761 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP5 6 55753645 55875564 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP6 6 7726797 7881422 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP7 20 57168748 57266629 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP8A 1 39491646 39525935 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 8 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMP8B 1 39757182 39788861 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMPER 7 33904308 34156356 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMPR1A 10 86756601 86932838 TRUE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 35 6 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMPR1B 4 94757968 95158448 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMPR2 2 202376936 202567751 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMS1 10 42782801 42834937 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 25 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMT2 7 112819147 112939916 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BMX 23 15464246 15556529 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BNC1 15 83255903 83284714 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BNC2 9 16409503 16870843 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BNIP1 5 173144442 173164387 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BNIP2 15 59659146 59689534 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 13 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BNIP3 10 131966455 131982013 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BNIP3L 8 26382898 26505636 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BNIPL 1 151036321 151047720 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOC 3 113211003 113287459 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 25 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOD1 5 173607514 173616660 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOD1L1 4 13568738 13627723 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 51 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOD1L2 18 57147062 57150300 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOK 2 241551424 241574138 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOLA1 1 149887890 149900798 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOLA2 16 29443056 29454964 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOLA2-SMG1P6 16 29443230 29454651 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOLA3 2 74135398 74147994 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOLL 2 197726879 197786762 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BOP1 8 144262102 144291370 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 6 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BORA 13 72727749 72756198 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 26 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BORCS5 12 12357079 12469694 FALSE 852 -0.515807943708335 34 12079259 12714091 NA 2 NA NA 2 NA 634832 NA 7 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BORCS6 17 8188333 8190907 FALSE 1147 -0.887294624890009 13 8096639 8189086 0.522719719214577 1 0 0.522719719214577 1 0 92447 1 7 5 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BORCS7 10 102854223 102864961 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BORCS7-ASMT 10 102854272 102901899 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BORCS8 19 19176903 19192591 FALSE 1322 2.02633800492863 113 19145724 19180744 0.593481580287395 18 NA 0.593481580287395 18 NA 35020 NA 3 5 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BORCS8-MEF2B 19 19145567 19192158 FALSE 1322 2.02633800492863 113 19145724 19180744 0.593481580287395 18 NA 0.593481580287395 18 NA 35020 NA 3 16 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPGM 7 134646808 134679813 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPHL 6 3118374 3153578 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPI 20 38304123 38337505 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFA1 20 33235995 33243311 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFA2 20 33161768 33181412 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFA3 20 33217310 33227758 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFB1 20 33273480 33309878 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFB2 20 33007600 33023709 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFB3 20 33055424 33073628 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFB4 20 33079644 33111751 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFB6 20 33031648 33044047 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPIFC 22 32413847 32464484 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPNT1 1 220057482 220090462 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BPTF 17 67825524 67984378 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 50 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRAF 7 140719327 140924928 FALSE 566 1.81346119138803 107 140719364 140929982 0.593481580287395 15 NA 0.593481580287395 15 NA 210618 NA 2 138 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRAP 12 111642146 111685986 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRAT1 7 2537877 2555727 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRCA1 17 43044295 43170245 TRUE 1190 1.50566040729047 96 43044408 43125348 0.593481580287395 12 3 0.593481580287395 12 3 80940 9 1 120 24 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRCA2 13 32315474 32400266 TRUE 942 0.972745299495383 82 32315300 32400269 0.593481580287395 8 NA 0.593481580287395 8 NA 84969 NA 2 85 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRCC3 23 155071420 155123074 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD1 22 49773283 49827512 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD2 6 32968660 32981505 FALSE 452 -1.11696370141631 7 32969097 32978244 0.593443012170704 1 0 0.593443012170704 1 0 9147 1 1 17 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD3 9 134030305 134068535 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD3OS 9 134025439 134034666 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD4 19 15235519 15332545 FALSE 1310 1.7061783599695 103 15235560 15332259 0.593481580287395 14 NA 0.593481580287395 14 NA 96699 NA 1 55 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD7 16 50313487 50368934 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD8 5 138139766 138178986 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRD9 5 850291 892824 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 16 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRDT 1 91949371 92014426 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRF1 14 105209286 105315589 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 30 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRF2 8 37843268 37849904 FALSE 603 2.26076545241379 120 37841173 37844874 0.593481580287395 21 NA 0.593481580287395 21 NA 3701 NA 2 13 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRI3 7 98252379 98310441 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRI3BP 12 124993700 125031231 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRICD5 16 2209253 2211950 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRINP1 9 119153458 119369467 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRINP2 1 177171497 177282422 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRINP3 1 190097662 190478404 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRIP1 17 61681266 61863521 TRUE 1211 1.49629747496849 98 61482947 61861969 0.593481580287395 12 NA 0.593481580287395 12 NA 379022 NA 3 50 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRIX1 5 34915376 34925996 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRK1 3 10115592 10127190 FALSE 234 0.284123196163012 66 10021453 10155649 0.593443012170704 4 0 0.593443012170704 4 0 134196 4 4 3 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRMS1 11 66337333 66345125 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRMS1L 14 35826318 35932325 FALSE 972 -0.135983194539659 52 35406876 36513087 0.426118104232275 3 NA 0.426118104232275 3 NA 1106211 NA 5 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BROX 1 222712553 222735196 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRPF1 3 9731729 9748018 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRPF3 6 36196744 36232790 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRS3 23 136487887 136493780 FALSE 1518 -0.532241026237508 31 136350124 136779443 NA 2 NA NA 2 NA 429319 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRSK1 19 55282072 55312533 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 20 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRSK2 11 1389899 1462689 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 26 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRWD1 21 39184176 39321559 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 51 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BRWD3 23 80670854 80809688 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 45 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSCL2 11 62690275 62709845 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 14 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSDC1 1 32365103 32394731 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSG 19 571277 583493 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSN 3 49554489 49671545 FALSE 254 -0.617285049863544 28 49413119 49681966 NA 2 NA NA 2 NA 268847 NA 7 48 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSND 1 54998193 55011784 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSPH1 19 47968046 47992170 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSPRY 9 113349541 113371233 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BST1 4 15702950 15738313 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BST2 19 17402939 17405648 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BSX 11 122977570 122981720 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTAF1 10 91923769 92030325 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 39 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD1 15 83016422 83067354 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD10 11 13388001 13463297 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD11 12 107318413 107659642 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD16 10 122271306 122338162 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD17 17 74356416 74361946 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD18 11 57743514 57751781 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD19 1 44808482 44815585 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD2 19 1985438 2034881 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD3 20 11890723 11926609 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD6 14 105248490 105251093 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD7 14 93237550 93333092 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD8 1 92080305 92184725 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 28 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTBD9 6 38168451 38640148 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTC 4 74744759 74794686 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTD 3 15601341 15647640 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTF3 5 73498408 73505635 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTF3L4 1 52056125 52090716 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTG1 12 92140278 92145897 TRUE 903 2.67025281660439 126 92140294 92145814 0.593481580287395 28 NA 0.593481580287395 28 NA 5520 NA 1 18 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTG2 1 203305491 203309602 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTG3 21 17593653 17612947 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTG4 11 111467526 111512354 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTK 23 101349447 101390796 FALSE 1498 1.69674197921389 102 101348696 101391051 0.593481580287395 14 NA 0.593481580287395 14 NA 42355 NA 4 26 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTLA 3 112463968 112499561 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTN1A1 6 26501221 26510422 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTN2A1 6 26457904 26476621 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 14 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTN2A2 6 26383096 26394874 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTN3A1 6 26402237 26415216 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 14 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTN3A2 6 26365159 26378320 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 10 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTN3A3 6 26440472 26453415 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTNL2 6 32393963 32407128 FALSE 448 -1.37938415915986 4 32229163 32442433 0.471349604034031 0 0 0.471349604034031 0 0 213270 0 3 11 4 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTNL3 5 180988845 181006727 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTNL8 5 180899077 180950906 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTNL9 5 181040225 181061523 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BTRC 10 101354033 101557321 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BUB1 2 110637698 110678114 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BUB1B 15 40161023 40221136 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BUB1B-PAK6 15 40217428 40276396 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BUB3 10 123154277 123170467 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BUD13 11 116748170 116772988 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BUD23 7 73683025 73705161 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BUD31 7 99408641 99419616 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BVES 6 105096822 105137174 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BX276092.9 23 71667542 71671524 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BYSL 6 41921188 41933046 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 8 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BZW1 2 200810594 200827338 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 BZW2 7 16646131 16706523 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf105 10 71711702 71737824 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf113 10 21125763 21146559 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf120 10 122697709 122699822 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf142 10 44292569 44294649 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf143 10 130020025 130110817 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf53 10 49679651 49710261 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf55 10 73909969 73922777 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf62 10 97589727 97590934 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf67 10 23201916 23344845 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf71 10 49299193 49327487 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf82 10 116663696 116670264 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf88 10 122930903 122954403 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf90 10 126424997 126670446 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf95 10 102449837 102451543 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C10orf99 10 84173738 84185294 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf1 11 111878935 111885975 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf16 11 8920076 8933006 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 8 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf21 11 2295645 2303049 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf24 11 68261335 68272001 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf40 11 4571423 4577820 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf42 11 6205566 6211132 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf45 11 128899565 128906035 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 3 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf49 11 46936689 47164385 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf52 11 111918032 111926872 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 4 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf53 11 111245805 111286401 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf54 11 93741591 93764749 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf58 11 16613132 16756881 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf65 11 108308519 108467531 FALSE 814 1.43922433200492 95 108223106 108368901 0.593481580287395 11 NA 0.593481580287395 11 NA 145795 NA 2 53 6 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf68 11 65916808 65919117 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf71 11 114391443 114400511 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf74 11 36594493 36659290 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf80 11 66744451 66843328 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf86 11 66975277 66977004 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf87 11 109422120 109429114 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf88 11 111514785 111537031 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf91 11 33698261 33700801 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf94 11 45906513 45907282 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf95 11 63759892 63768775 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf96 11 43942505 43944338 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf97 11 94512432 94532123 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C11orf98 11 62662816 62665217 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf10 12 53299686 53307177 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf29 12 88033846 88050160 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf4 12 4487728 4538508 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf40 12 39626167 39908300 FALSE 863 -0.717747500660561 19 38323881 40466037 0.593443012170704 1 0 0.593443012170704 1 0 2142156 1 8 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf42 12 103237591 103496010 FALSE 907 -0.595500763421402 28 102843745 103688153 NA 2 NA NA 2 NA 844408 NA 4 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf43 12 121000486 121016502 FALSE 924 1.94876692272873 111 120978522 121002214 0.593481580287395 17 NA 0.593481580287395 17 NA 23692 NA 2 15 6 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf45 12 104986310 105074197 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf49 12 116710185 116738070 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 5 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf50 12 87980035 88034037 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf54 12 48482498 48496386 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf56 12 64264762 64391192 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf57 12 6942978 6946003 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 5 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf60 12 14803572 14906586 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 18 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf65 12 123232916 123257959 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf66 12 64186316 64222296 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf71 12 27081058 27082514 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf73 12 103950202 103965708 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf75 12 105235290 105396097 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C12orf76 12 110027028 110073686 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C13orf42 13 51082119 51200252 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf119 14 23094765 23100462 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf132 14 96039324 96093889 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf177 14 98711613 98717766 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf178 14 77760830 77769742 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf180 14 104579684 104590515 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf28 14 44897295 44907257 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf39 14 60396469 60515543 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C14orf93 14 22985908 23010166 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf38-AP3S2 15 89834308 89912882 FALSE 1052 -0.427824936130558 37 89803513 90074115 NA 2 NA NA 2 NA 270602 NA 5 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf39 15 75195643 75212169 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf40 15 82988441 83011641 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf41 15 36579611 36810248 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf48 15 45430529 45448761 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf53 15 38628005 39180499 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf61 15 67521068 67530143 FALSE 1034 -0.650081137244343 25 67202833 68183661 0.276933305076759 1 0 0.276933305076759 1 0 980828 1 6 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf62 15 40770080 40772449 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C15orf65 15 55408548 55418764 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf45 16 15434295 15625028 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf46 16 81053497 81077267 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf54 16 29742463 29746006 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf58 16 31489471 31509309 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf70 16 67109958 67148539 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf71 16 4734272 4749396 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 10 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf72 16 9091648 9121640 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf74 16 85690084 85751129 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf78 16 49373823 49399431 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf86 16 67666816 67668758 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf87 16 46796607 46831411 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf89 16 5044122 5066110 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf90 16 3493484 3495480 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf91 16 1419744 1420800 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf92 16 30023334 30027736 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf95 16 87083562 87317420 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C16orf96 16 4556490 4600714 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf100 17 6651718 6693202 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf107 17 4899418 4902932 FALSE 1140 -0.117427632115161 54 4890662 4939168 0.569455701337318 3 NA 0.569455701337318 3 NA 48506 NA 5 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf113 17 42038232 42050614 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf47 17 58541587 58544368 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 8 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf49 17 7014495 7017525 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf50 17 35760897 35765079 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf51 17 21428381 21574517 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf53 17 44141906 44162476 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf58 17 67991101 67996431 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf64 17 60392429 60431421 FALSE 1208 -0.274405632017478 46 59953065 60500374 0.261157737158964 3 NA 0.261157737158964 3 NA 547309 NA 7 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf67 17 56791913 56838773 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 5 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf75 17 32324565 32350023 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf78 17 37375986 37392708 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf80 17 73232233 73248947 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf97 17 410327 431062 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf98 17 38835088 38841455 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C17orf99 17 78146353 78166177 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C18orf21 18 35972083 35979286 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C18orf25 18 46173553 46266991 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C18orf32 18 49477250 49487252 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C18orf54 18 54357917 54385218 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C18orf63 18 74315813 74359187 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 16 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf12 19 29698886 29715789 FALSE 1324 -0.357113338055037 41 29611949 29714885 NA 2 NA NA 2 NA 102936 NA 3 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf18 19 57958437 57974534 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf24 19 1275438 1279249 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf25 19 1461143 1479556 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf33 19 38304161 38305009 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf38 19 10836575 10869790 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf44 19 16496311 16521352 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf47 19 40319536 40348527 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf48 19 50797704 50804929 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf53 19 13774168 13778462 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf54 19 40740856 40751553 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf57 19 13882348 13906452 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf66 19 10086122 10093252 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf67 19 14081619 14085875 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf70 19 5678421 5680896 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf71 19 3539154 3544030 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf73 19 49118397 49119140 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf81 19 50649445 50659310 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C19orf84 19 51388289 51390574 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1D 2 68041130 68110948 FALSE 145 2.04124002810211 115 66512135 68042936 0.593481580287395 18 NA 0.593481580287395 18 NA 1530801 NA 3 4 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1GALT1 7 7156934 7248651 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1GALT1C1 23 120625793 120630150 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1GALT1C1L 2 43675151 43676322 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QA 1 22636506 22639608 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QB 1 22652762 22661538 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QBP 17 5432777 5448830 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QC 1 22643630 22648110 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QL1 17 44959693 44968071 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QL2 2 119156243 119158889 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QL3 10 16513743 16522005 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QL4 12 49332411 49337188 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF1 17 79022814 79049788 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 5 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF12 1 1242446 1246722 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF2 5 160347751 160370641 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF3 5 34019448 34043832 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF3-AMACR 5 33987174 34124528 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF4 11 47589664 47594659 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF5 11 119338939 119340940 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF6 22 37180167 37199385 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF7 4 15339818 15446166 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF8 16 1090005 1096244 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF9 13 24307166 24322535 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1QTNF9B 13 23890525 23902655 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1R 12 7080199 7092607 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 13 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1RL 12 7089587 7109273 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 17 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1S 12 6988259 7071032 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf100 1 244352635 244389663 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf105 1 172420688 172468831 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf109 1 37681570 37692249 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf112 1 169662007 169854080 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 54 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf115 1 220689845 220699157 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf116 1 207018521 207032756 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf122 1 37806979 37809454 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf123 1 53214099 53220617 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf127 1 10946471 10982037 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf131 1 231223763 231241187 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf141 1 67092165 67231853 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf146 1 92217940 92245813 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf158 1 12746215 12763699 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf159 1 1081818 1116361 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf162 1 111473792 111478512 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf167 1 11761787 11789585 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 25 10 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf174 1 3889125 3900293 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf185 1 51102221 51148086 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf189 1 154199372 154206333 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf194 1 109105951 109113857 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf198 1 230837119 230869589 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf21 1 184387058 184629020 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf210 1 43281883 43285617 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf216 1 35713875 35719472 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf226 1 162366908 162386818 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf35 1 228100726 228105411 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf43 1 154206696 154220637 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf50 1 42767269 42779488 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf52 1 85249953 85259672 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 5 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf53 1 197902647 197907367 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf54 1 150268200 150280916 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf56 1 151047740 151051986 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf61 1 156404250 156430701 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf68 1 152719522 152720470 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 4 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf74 1 209779208 209784559 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf87 1 59987269 60073770 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C1orf94 1 34166883 34219131 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2 6 31897785 31945672 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 25 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf141 20 2814987 2815833 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf144 20 33662284 33665619 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf173 20 35523186 35529652 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf194 20 3249305 3407625 FALSE 1364 -0.857765548893226 15 3238102 3660233 0.449390955025597 1 0 0.449390955025597 1 0 422131 1 4 37 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf202 20 1203454 1208274 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf203 20 32631652 32673941 FALSE 1373 0.921004845427493 81 32358286 32833703 0.593481580287395 7 NA 0.593481580287395 7 NA 475417 NA 7 3 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf204 20 64034344 64039962 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf27 20 3753508 3768387 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf85 20 58150904 58161150 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C20orf96 20 270863 290778 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C21orf58 21 46300181 46323875 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C21orf62 21 32793564 32813743 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C21orf91 21 17788967 17819386 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C22orf15 22 23763021 23765861 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C22orf23 22 37943050 37953669 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C22orf31 22 29058672 29061844 FALSE 1429 -0.86803144327003 13 29058821 29265673 0.522719719214577 1 0 0.522719719214577 1 0 206852 1 4 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C22orf39 22 19351368 19448232 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 34 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C22orf42 22 32149006 32159322 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C22orf46 22 41688939 41698136 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD2 21 41885112 41953890 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD2L 11 119102198 119118544 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD3 11 74012714 74171210 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 45 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD4A 15 62066977 62070917 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD4B 15 62163535 62165283 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD4C 19 405438 409170 FALSE 1268 -0.550469679268302 31 110858 440853 NA 2 NA NA 2 NA 329995 NA 6 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD4D 1 151837819 151840557 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD5 12 22448583 22544546 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2CD6 2 201487425 201619178 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 31 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf15 2 99141485 99151487 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf16 2 27537386 27582721 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 24 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf40 2 106063246 106078159 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf42 2 70149880 70248615 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf49 2 105337359 105349211 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf50 2 11133053 11146790 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf66 2 196805002 196810276 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf68 2 85606654 85612066 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf69 2 199911256 199955935 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf70 2 26562582 26579532 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf72 2 231037490 231049719 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf73 2 54330034 54383742 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf74 2 61145068 61164829 FALSE 142 -0.73704227505101 21 60942397 61470646 0.328777186374237 1 0 0.328777186374237 1 0 528249 1 5 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf76 2 119302225 119366828 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf78 2 73784189 73817147 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf80 2 208165343 208190073 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf81 2 74414176 74421591 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf83 2 227610090 227648606 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf88 2 189879609 190203484 FALSE 196 0.560581351590903 73 189784514 190057314 0.593481580287395 5 NA 0.593481580287395 5 NA 272800 NA 3 8 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf91 2 41935368 41956806 FALSE 129 -0.788642704622343 18 39178582 42057703 0.387809979850725 1 0 0.387809979850725 1 0 2879121 1 7 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C2orf92 2 97664217 97703064 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3 19 6677704 6730562 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 43 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3AR1 12 8058302 8066471 FALSE 842 -0.749785793032381 18 7924480 8175292 0.387809979850725 1 0 0.387809979850725 1 0 250812 1 7 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf14 3 62318973 62336213 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf18 3 50558025 50571027 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf20 3 14675099 14773034 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf22 3 126526999 126558965 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 9 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf30 3 119146150 119160042 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf33 3 155762617 155806351 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf38 3 88149743 88168729 FALSE 271 -0.374182784035321 41 87990792 88156503 NA 2 NA NA 2 NA 165711 NA 4 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf49 3 63819362 63848636 FALSE 263 -0.35964030579044 41 62532938 63864622 NA 2 NA NA 2 NA 1331684 NA 6 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf52 3 112086335 112131004 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf56 3 127193131 127198185 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf58 3 143971798 144048719 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf62 3 49268602 49277909 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf67 3 58717365 59050084 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf70 3 185078050 185153014 FALSE 306 -0.731204027242427 21 184824760 185282991 0.328777186374237 1 0 0.328777186374237 1 0 458231 1 4 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf80 3 160225496 160228213 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf84 3 49177632 49191858 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C3orf85 3 109118252 109150514 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4A 6 31982024 32002681 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 10 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4B 6 32014795 32035418 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4BPA 1 207104262 207144972 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4BPB 1 207088842 207099993 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf17 4 99511004 99542303 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf19 4 37453941 37623495 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf3 4 119296419 119304445 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf33 4 129093317 129116640 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf36 4 86876205 86892422 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf45 4 158893134 159038760 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf46 4 158666679 158672255 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf47 4 185426249 185449826 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf48 4 2041993 2043970 FALSE 326 -0.697910858685582 25 1983477 2331072 0.276933305076759 1 0 0.276933305076759 1 0 347595 1 7 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf50 4 5897373 6200555 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 28 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf51 4 145680115 145771032 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C4orf54 4 99636529 99654648 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5 9 120952335 121050276 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 41 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5AR1 19 47290023 47322066 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5AR2 19 47332147 47347327 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf15 5 133955502 133968787 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf22 5 31532266 31555058 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf24 5 134845680 134859737 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf30 5 103258702 103278660 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf34 5 43486701 43515145 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf38 5 2752131 2755397 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf46 5 147880726 147906538 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf47 5 173973779 174006140 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf49 5 7830378 7851490 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf51 5 41904188 41921636 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf52 5 157671553 157680143 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf58 5 170232447 170252575 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf60 5 179641544 179645046 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf63 5 127042558 127073492 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C5orf67 5 56511567 56606232 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6 5 41142234 41261438 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf10 6 32288526 32371912 FALSE 448 -1.37938415915986 4 32229163 32442433 0.471349604034031 0 0 0.471349604034031 0 0 213270 0 3 30 7 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf106 6 34587288 34696859 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf118 6 165279664 165309607 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 12 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf120 6 169702190 169704856 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf132 6 42101118 42142619 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf136 6 30647039 30653210 FALSE 442 -0.707992332207312 21 30547554 30653233 0.328777186374237 1 0 0.328777186374237 1 0 105679 1 8 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf141 6 49550646 49561907 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf15 6 31111223 31112559 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf163 6 87344849 87365463 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf201 6 4079206 4130951 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf203 6 107028213 107051342 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf222 6 36315757 36336885 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf223 6 44000580 44005958 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf226 6 42890265 42890816 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf47 6 31658298 31660772 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf48 6 31834608 31839766 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf52 6 10671418 10694797 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf58 6 127519455 127591817 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf62 6 24704861 24720836 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C6orf89 6 36871870 36928964 FALSE 462 -0.524992064635535 34 36717398 37027971 NA 2 NA NA 2 NA 310573 NA 7 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7 5 40909252 40982939 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 18 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf25 7 42908726 42912305 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf26 7 6590017 6608726 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf31 7 25134697 25180356 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 12 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf33 7 148590565 148615860 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf43 7 100154420 100158715 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf50 7 996986 1138260 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf55-LUC7L2 7 139341360 139422599 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf57 7 48035511 48061304 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf61 7 100456615 100464271 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C7orf77 7 124777292 124790810 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8A 1 56854806 56918221 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8B 1 56929210 56966140 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8G 9 136945185 136946975 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf33 8 145052378 145066685 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 5 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf34 8 68330722 68819022 FALSE 622 3.00309276829497 133 68224636 68331064 0.593481580287395 36 6 0.593481580287395 36 6 106428 30 2 15 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf37 8 95244919 95269201 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf44 8 66667615 66685564 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf48 8 13566843 13568287 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf58 8 22599601 22604150 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf59 8 85214076 85220421 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf74 8 10672637 10700593 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf76 8 123219957 123241398 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf82 8 144525733 144529132 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 5 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf86 8 38510834 38560939 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf88 8 90958637 90985257 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C8orf89 8 73241329 73259502 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9 5 39284262 39424868 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 31 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf116 9 135495181 135501734 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf129 9 93318199 93346414 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf131 9 35041095 35045991 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf135 9 69820793 69906232 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf152 9 110190048 110208189 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf153 9 86220265 86259657 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf16 9 128160260 128163928 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf24 9 34379019 34397832 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf3 9 94726701 95087218 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf40 9 74946581 74952886 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf43 9 113410054 113429684 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf50 9 129612225 129620776 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf57 9 72051376 72072721 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf64 9 83938311 83956986 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf66 9 212824 215893 FALSE 642 -0.969744142087345 10 177800 2007272 0.593443012170704 1 0 0.593443012170704 1 0 1829472 1 8 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf72 9 27546545 27573866 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf78 9 129827290 129835863 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 10 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf84 9 111686173 111795008 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 31 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf85 9 71911510 71986054 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 C9orf92 9 16203935 16410990 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA1 8 85327608 85379014 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA10 17 51630313 52160017 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA11 19 48637942 48646312 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA12 15 63321378 63382161 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA13 8 85220587 85284073 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA14 1 150257159 150265078 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA2 8 85463852 85481493 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA3 8 85373436 85449040 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA4 17 60149936 60170899 FALSE 1208 -0.274405632017478 46 59953065 60500374 0.261157737158964 3 NA 0.261157737158964 3 NA 547309 NA 7 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA5A 16 87881546 87936580 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA5B 23 15688830 15788409 FALSE 1455 0.162648419400782 63 15589392 15825738 0.54220702508464 4 NA 0.54220702508464 4 NA 236346 NA 5 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA6 1 8945867 8975092 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA7 16 66844379 66854153 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA8 8 60187347 60281412 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CA9 9 35673856 35681159 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAAP1 9 26840685 26892804 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAB39 2 230712845 230821075 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAB39L 13 49308650 49444126 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABCOCO1 10 61662961 61766766 FALSE 720 -0.594104068900525 28 60871546 61896774 NA 2 NA NA 2 NA 1025228 NA 3 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABIN1 22 24011192 24178628 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 42 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABLES1 18 23134564 23260467 FALSE 1247 -0.841548999761881 15 22993758 23462969 0.449390955025597 1 0 0.449390955025597 1 0 469211 1 4 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABLES2 20 62388632 62407285 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABP1 12 120640552 120667324 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABP2 11 67518912 67524517 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABP4 11 67452406 67460313 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABP5 19 48029953 48044053 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABP7 22 29720084 29731839 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABS1 4 70334966 70337116 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CABYR 18 24138956 24161603 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACFD1 9 133459965 133470848 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACHD1 1 64470792 64693058 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1A 19 13206442 13633025 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 60 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1B 9 137877789 138124624 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 55 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1C 12 1970786 2697950 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 62 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1D 3 53328963 53813733 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 59 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1E 1 181317690 181808084 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 54 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1F 23 49205063 49233371 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 52 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1G 17 50561068 50627474 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 49 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1H 16 1153121 1221772 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 47 4 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1I 22 39570753 39689737 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 46 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA1S 1 201039512 201112566 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 46 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA2D1 7 81946444 82443798 FALSE 538 2.36664616681678 121 81699165 81950421 0.593481580287395 23 NA 0.593481580287395 23 NA 251256 NA 2 40 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA2D2 3 50362799 50504244 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 36 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA2D3 3 54122547 55074557 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 44 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNA2D4 12 1791957 1918836 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 44 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNB1 17 39173456 39197703 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNB2 10 18140677 18543557 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNB3 12 48813794 48828941 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNB4 2 151832768 152099475 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG1 17 67044590 67056797 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 5 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG2 22 36563921 36703558 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG3 16 24255553 24362801 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG4 17 66964910 67033398 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG5 17 66835117 66885486 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG6 19 53992288 54012669 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG7 19 53909335 53943941 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACNG8 19 53963040 53990215 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACTIN 19 3610641 3626815 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACUL1 10 118674167 118755249 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CACYBP 1 174999163 175011715 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAD 2 27217390 27243943 FALSE 123 -0.120982022404975 54 27204482 27258784 0.569455701337318 3 NA 0.569455701337318 3 NA 54302 NA 4 48 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CADM1 11 115169218 115504957 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CADM2 3 84958981 86074429 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CADM3 1 159171609 159203313 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CADM4 19 43622368 43639839 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CADPS 3 62398346 62875389 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 33 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CADPS2 7 122318425 122886759 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 44 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAGE1 6 7326656 7389743 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALB1 8 90058608 90095475 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALB2 16 71358713 71390438 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALCA 11 14966668 14972354 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALCB 11 14904997 15082342 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALCOCO1 12 53708517 53727745 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALCOCO2 17 48830988 48866522 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALCR 7 93424487 93574730 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 14 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALCRL 2 187343129 187448460 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALD1 7 134744252 134970728 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 19 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALHM1 10 103453387 103458888 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALHM2 10 103446786 103452402 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALHM3 10 103472804 103479240 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALHM4 6 116529013 116558868 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALHM5 6 116511646 116524792 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALHM6 6 116461370 116463779 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALM1 14 90396502 90408261 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALM2 2 47160082 47176601 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALM3 19 46601074 46610793 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALML3 10 5524009 5526771 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 2 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALML4 15 68190705 68206110 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALML5 10 5498697 5499555 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 2 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALML6 1 1914827 1917296 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALN1 7 71779491 72447151 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALR 19 12938578 12944489 FALSE 1304 1.50961595368308 98 12938638 12944492 0.593481580287395 12 NA 0.593481580287395 12 NA 5854 NA 1 10 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALR3 19 16479057 16496192 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALU 7 128739292 128771807 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CALY 10 133324072 133336935 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK1 3 9757342 9769992 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK1D 10 12349482 12835545 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK1G 1 209583717 209613938 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK2A 5 150219491 150290291 FALSE 406 -0.544352612252152 31 150166967 150399004 NA 2 NA NA 2 NA 232037 NA 5 20 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK2B 7 44217150 44334577 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK2D 4 113451032 113761927 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK2G 10 73812501 73874591 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 24 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK2N1 1 20482391 20486220 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK2N2 3 184259213 184261463 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMK4 5 111223653 111494886 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMKK1 17 3860315 3894891 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMKK2 12 121237691 121298308 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMKMT 2 44361950 44772592 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMKV 3 49857988 49870222 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMLG 5 134738501 134752160 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMP 3 48223347 48225491 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMSAP1 9 135808487 135907228 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMSAP2 1 200739558 200860704 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMSAP3 19 7595902 7618304 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMTA1 1 6785324 7769706 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 38 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAMTA2 17 4967992 4987652 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 28 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAND1 12 67269281 67319951 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAND2 3 12796472 12871916 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 25 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CANT1 17 78991717 79009867 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CANX 5 179678628 179730925 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAP1 1 40040233 40072649 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAP2 6 17393216 17557792 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPG 2 85394748 85418432 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN1 11 65180566 65212006 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 22 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN10 2 240586716 240617705 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 16 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN11 6 44158811 44184402 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 23 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN12 19 38730187 38769904 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN13 2 30722771 30820542 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 22 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN14 2 31173056 31233858 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 22 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN15 16 527717 554636 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN2 1 223701593 223776018 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN3 15 42359500 42412318 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN5 11 77066941 77126155 FALSE 803 -0.341739698901511 44 76796634 77285099 0.18904974046126 3 NA 0.18904974046126 3 NA 488465 NA 7 16 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN6 23 111245103 111270523 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN7 3 15206152 15252918 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN8 1 223538007 223665734 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 18 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPN9 1 230747384 230802003 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPNS1 19 36139575 36150353 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPNS2 16 55566672 55567687 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPRIN1 11 34051683 34101156 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPRIN2 12 30709552 30754951 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 23 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPS 19 5911707 5915877 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPS2 12 75275979 75390928 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 27 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPSL 5 35904295 35938779 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 5 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPZA1 1 112619173 112671619 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPZA2 7 116811070 116922049 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 10 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPZA3 12 18738101 18739187 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAPZB 1 19338776 19485539 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD10 22 37490362 37519542 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD11 7 2906141 3043945 FALSE 515 1.48227885269944 98 2906277 3043705 0.593481580287395 12 NA 0.593481580287395 12 NA 137428 NA 1 29 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD14 17 80169992 80209331 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 24 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD16 11 105041326 105101431 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD17 11 105092469 105101431 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD18 11 105137721 105531697 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD19 9 93096218 93113283 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD6 5 40841184 40860175 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD8 19 48180770 48255946 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARD9 9 136361903 136373681 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARF 2 202912214 202987063 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARHSP1 16 8852942 8869012 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARM1 19 10871513 10923070 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARMIL1 6 25279078 25620530 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 38 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARMIL2 16 67644919 67657569 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 34 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARMIL3 14 24052000 24069728 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 39 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARNMT1 9 74981020 75028423 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARNS1 11 67414968 67425607 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARS 11 3000922 3057613 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARS2 13 110641412 110713603 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CARTPT 5 71719163 71721048 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASC1 12 25108420 25195162 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASC10 10 21492658 21497262 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASC3 17 40140318 40172183 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASC4 15 44288729 44415758 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASD1 7 94509219 94557019 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASK 23 41514934 41923645 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 37 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASKIN1 16 2177180 2196525 FALSE 1071 1.64776886943527 100 2168137 2178106 0.593481580287395 13 NA 0.593481580287395 13 NA 9969 NA 2 30 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASKIN2 17 75500261 75515583 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 24 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP1 11 105025443 105035250 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP10 2 201182881 201229406 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP14 19 15049384 15058293 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP2 7 143288215 143307696 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP3 4 184627696 184649509 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP4 11 104942866 104969436 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP5 11 104994235 105023168 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP6 4 109688622 109703583 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP7 10 113679162 113730907 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP8 2 201233443 201287711 TRUE 204 1.09155986913435 84 201233603 201287736 0.593481580287395 9 NA 0.593481580287395 9 NA 54133 NA 1 21 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP8AP2 6 89829894 89874436 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASP9 1 15490832 15526534 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASQ1 1 160190556 160201886 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASQ2 1 115700007 115768781 FALSE 41 -0.81063338900568 15 115664208 116388119 0.449390955025597 1 0 0.449390955025597 1 0 723911 1 6 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASR 3 122183683 122291629 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASS4 20 56412112 56460387 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAST 5 96525267 96779595 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 34 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASTOR1 22 30285117 30289627 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASTOR3 7 100200653 100272232 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 26 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CASZ1 1 10636604 10796650 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 30 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAT 11 34438925 34472062 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATIP 2 218356856 218368099 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPER1 11 66016752 66026517 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 16 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPER2 15 43628503 43668118 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPER3 5 134967906 135011707 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPER4 1 26190561 26202968 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPERB 14 91580696 91780707 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPERD 19 5720677 5778734 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPERE 1 244454377 244641177 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 25 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPERG 19 38335775 38370943 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CATSPERZ 11 64300391 64304770 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAV1 7 116524785 116561184 FALSE 556 2.96536444167507 132 116500298 116803457 0.593481580287395 35 NA 0.593481580287395 35 NA 303159 NA 3 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAV2 7 116287380 116508541 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 3 1 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAV3 3 8733800 8841808 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAVIN1 17 42402452 42423517 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAVIN2 2 191834302 191847255 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAVIN3 11 6318946 6320647 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CAVIN4 9 100578079 100587906 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBARP 19 1228287 1238027 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBFA2T2 20 33490075 33650036 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBFA2T3 16 88874858 88977204 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBFB 16 67029116 67101058 TRUE 1110 1.66379373912956 102 67029367 67100983 0.593481580287395 13 NA 0.593481580287395 13 NA 71616 NA 1 15 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBL 11 119206276 119313926 TRUE 818 1.86901932406862 109 119206405 119312590 0.593481580287395 16 NA 0.593481580287395 16 NA 106185 NA 2 61 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLB 3 105655461 105869552 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLC 19 44777869 44800652 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLL1 7 107743697 107761667 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLL2 23 22272943 22274461 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLN1 16 49277917 49281831 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLN2 18 72536680 72638521 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLN3 14 24426532 24430954 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBLN4 20 55997440 56005472 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBR1 21 36069941 36073166 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBR3 21 36134912 36146566 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBR4 4 168863770 169010275 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBS 21 43053191 43076943 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBWD1 9 121038 179147 FALSE 641 -0.549545230300705 31 14889 175747 NA 2 NA NA 2 NA 160858 NA 3 16 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBWD2 2 113437691 113496189 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBWD3 9 68232003 68300015 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBWD5 9 65668805 65734041 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBWD6 9 41131306 41199261 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX1 17 48070052 48101521 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX2 17 79778132 79787983 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 9 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX3 7 26201162 26213356 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX4 17 79833156 79839429 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX5 12 54230940 54280133 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX6 22 38861450 38872314 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX7 22 39120167 39152674 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBX8 17 79792132 79801683 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBY1 22 38656636 38673854 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CBY3 5 179678583 179680974 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CC2D1A 19 13906201 13930879 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 25 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CC2D1B 1 52345723 52366193 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CC2D2A 4 15469865 15601557 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 39 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CC2D2B 10 95907603 96032684 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 35 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCAR1 10 68721012 68792377 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCAR2 8 22604632 22621514 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCBE1 18 59430939 59697662 FALSE 1261 -0.626771039159971 28 58934445 59897059 NA 2 NA NA 2 NA 962614 NA 7 11 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC102A 16 57512178 57536599 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC102B 18 68715209 69055189 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC103 17 44899142 44905390 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC105 19 15010744 15023269 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC106 19 55641062 55653161 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC107 9 35658290 35661511 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC110 4 185445182 185471759 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 16 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC112 5 115267188 115296831 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC113 16 58231157 58283836 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC114 19 48296457 48321894 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC115 2 130338241 130342349 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC116 22 21632716 21637327 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC117 22 28772674 28789301 FALSE 1427 -0.30656290382667 44 28687879 28878609 0.18904974046126 3 NA 0.18904974046126 3 NA 190730 NA 4 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC12 3 46921726 46982010 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC120 23 49053572 49069857 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC121 2 27625639 27629012 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC122 13 43823909 43879727 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC124 19 17933016 17943991 FALSE 1318 -0.547059940466149 31 17859952 18149709 NA 2 NA NA 2 NA 289757 NA 7 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC125 5 69280175 69332809 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC126 7 23597379 23644708 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC127 5 196871 218215 FALSE 366 -0.0813597508595068 54 92226 256841 0.569455701337318 3 NA 0.569455701337318 3 NA 164615 NA 4 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC13 3 42708269 42773253 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 18 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC130 19 13731760 13763296 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC134 22 41800679 41826299 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC136 7 128790757 128822132 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 24 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC137 17 81666364 81673904 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 8 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC138 2 108786757 108885477 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC14 3 123897305 123961408 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC140 2 222298147 222305217 FALSE 219 1.06005349802167 83 222199982 222424797 0.593481580287395 8 NA 0.593481580287395 8 NA 224815 NA 3 4 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC141 2 178829757 179050086 FALSE 191 -0.789559166320211 18 178752075 181062791 0.387809979850725 1 0 0.387809979850725 1 0 2310716 1 6 27 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC142 2 74471986 74483408 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC144A 17 16689537 16777881 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC144NL 17 20836447 20896140 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC146 7 77122434 77329533 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 38 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC148 2 158171081 158456753 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC149 4 24806117 24980204 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC15 11 124954121 125041489 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC150 2 196639554 196763490 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC151 19 11420604 11435782 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC152 5 42756801 42802360 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC153 11 119189638 119196769 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC154 16 1434383 1444556 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC155 19 49388218 49417994 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC157 22 30356635 30378658 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 15 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC158 4 76312997 76421868 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC159 19 11344684 11354944 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC160 23 134237047 134246207 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC163 1 45493866 45500079 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC166 8 143706694 143708109 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC167 6 37482920 37499922 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC168 13 102729369 102759070 FALSE 954 -0.389263146341276 41 102729512 102750030 NA 2 NA NA 2 NA 20518 NA 1 83 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC169 13 36222008 36297840 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC169-SOHLH2 13 36168794 36297842 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 21 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC17 1 45620044 45624057 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC170 6 151494030 151621193 FALSE 506 -0.933338902263755 13 151405214 151686189 0.522719719214577 1 0 0.522719719214577 1 0 280975 1 4 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC171 9 15553086 16061663 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 29 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC172 10 116324428 116380029 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC173 2 169645425 169694433 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC174 3 14651746 14672659 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC175 14 59504539 59576831 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC177 14 69569816 69574837 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC178 18 32937402 33441101 FALSE 1249 -1.21939637529209 5 32938021 33734280 0.40635440857188 0 0 0.40635440857188 0 0 796259 0 2 23 2 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC179 11 22846931 22860426 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC18 1 93179919 93278730 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 32 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC180 9 97307304 97378524 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 39 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC181 1 169394870 169460669 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC182 17 57744481 57745312 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC183 9 136796350 136807741 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC184 12 48183584 48185926 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC185 1 223393417 223395470 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC186 10 114120862 114174232 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC188 22 20148427 20151065 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC189 16 30757423 30762710 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC190 1 162824458 162868815 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC191 3 113964137 114056613 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC192 5 127703389 127941634 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC196 14 66411704 66498677 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC197 14 93987225 94008863 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC198 14 57469301 57493867 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC200 17 43216941 43305397 FALSE 1191 -0.515679675839481 34 43146165 43526482 NA 2 NA NA 2 NA 380317 NA 6 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC22 23 49235467 49250526 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC24 1 43991359 43996528 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC25 8 27733311 27772653 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC27 1 3746460 3771645 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC28A 6 138773509 138793319 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC28B 1 32200386 32205387 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC3 10 12896625 13099652 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC30 1 42463330 42654664 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC32 15 40528683 40565057 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC33 15 74202705 74336472 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC34 11 27330827 27363868 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC36 3 49198428 49258104 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC38 12 95867048 95942974 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC39 3 180602858 180870933 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 34 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC40 17 80036632 80100613 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 26 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC42 17 8729934 8745219 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC43 17 44673069 44689779 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC47 17 63745250 63776351 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC50 3 191329077 191398670 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 14 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC51 3 48432164 48440456 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC54 3 107377194 107378637 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC57 17 82101460 82212830 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 19 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC58 3 122359591 122383231 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC59 12 82223681 82358805 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 6 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC6 10 59788763 59906656 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC60 12 119334712 119541047 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC61 19 45995461 46021318 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC62 12 122774327 122827528 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC63 12 110846769 110907535 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC65 12 48904110 48931840 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC66 3 56557161 56621818 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC68 18 54901509 54959508 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC69 5 151181052 151224145 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC7 10 32446140 32882874 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 44 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC70 13 51861981 51866232 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC71 3 49162535 49166321 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC71L 7 106656765 106660996 FALSE 554 2.44912760521518 123 106248413 107045189 0.593481580287395 24 NA 0.593481580287395 24 NA 796776 NA 4 3 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC73 11 32602246 32794658 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC74A 2 131527675 131533666 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 8 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC74B 2 130139287 130145134 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC77 12 389273 442645 FALSE 829 -0.407714329256422 41 409362 908739 NA 2 NA NA 2 NA 499377 NA 4 11 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC78 16 722582 726954 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC8 19 46410329 46413662 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC80 3 112596794 112649530 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC81 11 86374736 86423109 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC82 11 96352769 96389956 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC83 11 85855101 85920021 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 11 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC84 11 118998142 119015791 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC85A 2 56184123 56386173 FALSE 138 -0.855981369957181 15 55336671 58154699 0.449390955025597 1 0 0.449390955025597 1 0 2818028 1 7 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC85B 11 65890112 65891635 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC85C 14 99500180 99604026 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC86 11 60842071 60851081 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC87 11 66590176 66593083 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC88A 2 55287842 55419895 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 38 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC88B 11 64340223 64357534 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 32 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC88C 14 91271323 91417844 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 40 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC89 11 85684866 85686277 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC9 19 47255980 47273701 FALSE 1352 1.4524525099988 95 47220914 47260837 0.593481580287395 11 NA 0.593481580287395 11 NA 39923 NA 2 13 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC90B 11 83259097 83286407 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC91 12 28133249 28581511 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC92 12 123918660 123972831 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC93 2 117915478 118014133 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 24 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC96 4 7040849 7042939 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC97 19 41310189 41324883 FALSE 1338 -0.617993748746664 28 41264533 41322632 NA 2 NA NA 2 NA 58099 NA 3 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCDC9B 15 40331452 40340967 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCER1 12 90905622 90955176 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCER2 19 38908980 38912158 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCHCR1 6 31142439 31158238 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 19 8 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCIN 9 36169394 36171334 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCK 3 42257825 42266207 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCKAR 4 26481400 26490462 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCKBR 11 6259736 6272127 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL1 17 34360328 34363231 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL11 17 34285668 34288334 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL13 17 34356452 34358610 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL14 17 35983291 35987004 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL15 17 35996440 36002038 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL15-CCL14 17 35983656 36001621 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL16 17 35976493 35981496 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL17 16 57404767 57416062 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL18 17 36064280 36072032 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL19 9 34689567 34691277 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL2 17 34255218 34257203 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL20 2 227805739 227817564 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL21 9 34709005 34710124 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL22 16 57358772 57366190 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL23 17 36013056 36017968 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL24 7 75811665 75823356 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL25 19 8052767 8062650 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL26 7 75769533 75789896 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL27 9 34661880 34664048 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL28 5 43376645 43412391 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL3 17 36088256 36090169 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL3L1 17 36194869 36196758 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL4 17 36103590 36105621 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL4L2 17 36210924 36212878 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL5 17 35871491 35880793 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL7 17 34270221 34272242 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCL8 17 34319036 34321402 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCM2 7 44999475 45076469 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCM2L 20 32010450 32032180 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNA1 13 36431520 36442882 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNA2 4 121816444 121823933 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNB1 5 69167010 69178245 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNB1IP1 14 20311368 20333312 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNB2 15 59105078 59125045 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNB3 23 50202713 50351910 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 22 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNC 6 99542380 99568973 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCND1 11 69641087 69654474 FALSE 795 1.97939544348603 113 69641322 70088057 0.593481580287395 17 NA 0.593481580287395 17 NA 446735 NA 6 19 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCND2 12 4273772 4305350 FALSE 832 2.16514917403125 118 4269876 4445774 0.593481580287395 19 NA 0.593481580287395 19 NA 175898 NA 5 28 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCND3 6 41934933 42050357 FALSE 467 2.04514316129983 115 41932493 42049956 0.593481580287395 18 NA 0.593481580287395 18 NA 117463 NA 2 18 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNDBP1 15 43185118 43197176 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNE1 19 29811898 29824308 FALSE 1325 1.81829639903813 107 29811998 29824205 0.593481580287395 15 NA 0.593481580287395 15 NA 12207 NA 1 14 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNE2 8 94879770 94896678 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNF 16 2429394 2458854 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNG1 5 163437569 163446151 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNG2 4 77157151 77433388 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNH 5 87318416 87413019 FALSE 387 0.548749345456998 71 87268048 87391832 0.593481580287395 5 NA 0.593481580287395 5 NA 123784 NA 2 45 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNI 4 77047158 77076005 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNI2 5 132747445 132754403 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNJ 10 96043394 96060870 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNJL 5 160249106 160345396 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNK 14 99481169 99535044 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNL1 3 157146508 157160760 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNL2 1 1385711 1399328 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNO 5 55231152 55233680 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNQ 23 153587919 153600045 TRUE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNT1 12 48688458 48716998 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNT2 2 134918235 134959342 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNY 10 35247025 35572669 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCNYL1 2 207711540 207761839 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCP110 16 19523811 19553408 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 20 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCPG1 15 55340032 55408510 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR1 3 46201709 46208396 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR10 17 42678889 42683917 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR2 3 46353734 46360928 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR3 3 46163604 46266706 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR4 3 32951574 32956349 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR5 3 46370854 46376206 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR6 6 167111807 167139696 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR7 17 40553769 40565472 FALSE 1181 -0.700455617092272 25 40443951 40565437 0.276933305076759 1 0 0.276933305076759 1 0 121486 1 3 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR8 3 39329706 39333511 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCR9 3 45886504 45903177 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCRL2 3 46407163 46412997 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCS 11 66592821 66606019 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCSAP 1 229321005 229343294 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCSER1 4 90127535 91601913 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCSER2 10 84328558 84518521 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT2 12 69585334 69601570 FALSE 898 2.71670560587598 127 69470414 69585477 0.593481580287395 29 NA 0.593481580287395 29 NA 115063 NA 2 16 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT3 1 156308968 156367873 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT4 2 61868089 61888804 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT5 5 10249921 10266412 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT6A 7 56051630 56063989 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT6B 17 34927859 34981078 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT7 2 73233420 73253021 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT8 21 29055805 29073797 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCT8L2 22 16590751 16592810 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCZ1 7 5898725 5926550 FALSE 519 -0.179912547532896 52 5563734 6005889 0.426118104232275 3 NA 0.426118104232275 3 NA 442155 NA 7 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CCZ1B 7 6794134 6826770 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD101 1 117001750 117036476 FALSE 42 -0.448523507205421 37 116388682 117121244 NA 2 NA NA 2 NA 732562 NA 8 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD109 6 73695785 73828316 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 36 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD14 5 140631728 140633701 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD151 11 832843 839831 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD160 1 145719471 145739288 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD163 12 7470813 7503893 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD163L1 12 7346685 7479897 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 30 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD164 6 109366514 109382812 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD164L2 1 27379176 27383380 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD177 19 43353659 43363172 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD180 5 67179613 67196799 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD19 16 28931939 28939346 FALSE 1095 1.35895103581226 91 28932080 28938903 0.593481580287395 11 NA 0.593481580287395 11 NA 6823 NA 2 15 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD1A 1 158254137 158258269 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD1B 1 158327951 158331531 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD1C 1 158289786 158293630 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD1D 1 158179947 158184896 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD1E 1 158353696 158357553 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD2 1 116754385 116769228 FALSE 42 -0.448523507205421 37 116388682 117121244 NA 2 NA NA 2 NA 732562 NA 8 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD200 3 112332347 112362812 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD200R1 3 112921209 112975122 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD200R1L 3 112815709 112846856 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD207 2 70830214 70835822 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD209 19 7739994 7747564 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD22 19 35319261 35347355 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD226 18 69831158 69961803 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD244 1 160830160 160862855 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD247 1 167430640 167518610 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD248 11 66314487 66317044 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD27 12 6444867 6451718 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD274 9 5450503 5470566 FALSE 650 1.81115561137557 107 5449869 5629487 0.593481580287395 15 NA 0.593481580287395 15 NA 179618 NA 3 24 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD276 15 73683966 73714518 FALSE 1037 2.3517917209627 121 73684280 73714383 0.593481580287395 22 NA 0.593481580287395 22 NA 30103 NA 1 21 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD28 2 203706475 203738912 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD2AP 6 47477789 47627263 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD2BP2 16 30350766 30355361 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD300A 17 74466399 74484796 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD300C 17 74541108 74546143 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD300E 17 74609887 74623738 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD300LB 17 74521174 74531474 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 5 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD300LD 17 74579365 74592283 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD300LF 17 74694311 74712978 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD300LG 17 43847148 43863629 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD302 2 159768630 159798255 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD320 19 8302127 8308356 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD33 19 51225064 51243860 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD34 1 207880972 207911402 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD36 7 80369575 80679277 FALSE 537 -0.268216004269263 46 80135271 80922339 0.261157737158964 3 NA 0.261157737158964 3 NA 787068 NA 4 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD37 19 49335171 49343335 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD38 4 15778275 15853230 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD3D 11 118338954 118342744 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD3E 11 118304545 118316175 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD3EAP 19 45406209 45410766 FALSE 1348 0.0505055964886688 60 45373781 45485732 0.593443012170704 3 NA 0.593443012170704 3 NA 111951 NA 5 11 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD3G 11 118344344 118355161 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD4 12 6786858 6820808 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 11 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD40 20 46118272 46129863 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD40LG 23 136648193 136660390 FALSE 1518 -0.532241026237508 31 136350124 136779443 NA 2 NA NA 2 NA 429319 NA 6 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD44 11 35138870 35232402 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD46 1 207752057 207795513 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD47 3 108043094 108091862 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD48 1 160678746 160711851 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD5 11 61102395 61127852 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD52 1 26317957 26320523 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD53 1 110871188 110899928 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD55 1 207321376 207386804 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD58 1 116514535 116571039 TRUE 42 -0.448523507205421 37 116388682 117121244 NA 2 NA NA 2 NA 732562 NA 8 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD59 11 33703010 33736491 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD5L 1 157830914 157898256 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD6 11 60971680 61020377 FALSE 781 -0.443388996781571 37 60921973 61017566 NA 2 NA NA 2 NA 95593 NA 4 16 6 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD63 12 55725323 55729707 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD68 17 7579467 7582113 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD69 12 9752486 9760901 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD7 17 82314868 82317602 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD70 19 6583183 6604103 FALSE 1285 1.68720862511838 102 6535003 6665143 0.593481580287395 14 NA 0.593481580287395 14 NA 130140 NA 3 8 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD72 9 35609533 35646810 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD74 5 150401637 150412929 FALSE 407 2.10047009867694 117 150401647 150412902 0.593481580287395 19 NA 0.593481580287395 19 NA 11255 NA 1 21 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD79A 19 41877120 41881372 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD79B 17 63928740 63932354 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 8 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD80 3 119524293 119559602 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD81 11 2376177 2397419 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD82 11 44564427 44620363 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD83 6 14117256 14136918 FALSE 426 1.84091726184819 107 13814106 14136658 0.593481580287395 15 NA 0.593481580287395 15 NA 322552 NA 3 12 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD84 1 160541095 160579516 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD86 3 122055366 122121139 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD8A 2 86784610 86808396 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD8B 2 86815339 86861924 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD8B2 2 106487364 106544297 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD9 12 6199715 6238271 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD93 20 23079349 23086340 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD96 3 111292719 111665750 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CD99L2 23 150766337 150898816 FALSE 1522 -0.468653153264543 37 150592603 151672444 NA 2 NA NA 2 NA 1079841 NA 7 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDA 1 20588948 20618908 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDADC1 13 49247925 49293485 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDAN1 15 42723544 42737128 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC123 10 12195965 12250589 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC14A 1 100345001 100520278 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC14B 9 96490241 96619830 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC14C 7 48919765 48927454 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 6 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC16 13 114234887 114272723 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC20 1 43358955 43363203 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC20B 5 55112995 55173175 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 17 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC23 5 138187648 138213343 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC25A 3 48157146 48188402 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC25B 20 3786772 3806121 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC25C 5 138285265 138338355 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC26 9 113255835 113275589 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC27 17 47117703 47189422 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC34 19 531712 542092 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC37 19 10391134 10420121 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC37L1 9 4679559 4708398 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC40 6 110180141 110254275 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42 1 22052627 22092946 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42BPA 1 226989865 227318474 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 40 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42BPB 14 102932379 103057462 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 38 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42BPG 11 64823387 64844569 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 39 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42EP1 22 37560447 37569405 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42EP2 11 65314818 65322429 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42EP3 2 37641882 37738468 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42EP4 17 73283624 73312175 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42EP5 19 54465026 54473264 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 2 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42SE1 1 151050971 151070325 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC42SE2 5 131245493 131398447 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC45 22 19479459 19520612 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC5L 6 44387525 44450426 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC6 17 40287633 40304657 FALSE 1178 0.91937941312882 81 40288011 40302634 0.593481580287395 7 NA 0.593481580287395 7 NA 14623 NA 1 22 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC7 1 91500893 91525764 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDC73 1 193121800 193254815 TRUE 77 0.164394122642393 63 193069139 193236365 0.54220702508464 4 NA 0.54220702508464 4 NA 167226 NA 4 37 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCA2 8 25458997 25507920 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 21 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCA3 12 6844793 6852066 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCA4 14 105009573 105021148 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCA5 11 65066300 65084164 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCA7 2 173354820 173368997 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCA7L 7 21900900 21946084 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCA8 1 37692418 37709719 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCP1 3 45082278 45146422 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDCP2 1 54132968 54153770 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH1 16 68737225 68835548 TRUE 1114 1.13475645647711 84 68687630 68860332 0.593481580287395 9 NA 0.593481580287395 9 NA 172702 NA 3 35 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH10 5 24487100 24644978 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH11 16 64943753 65126112 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH12 5 21750673 22853622 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH13 16 82626803 83800640 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH15 16 89171767 89195492 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 20 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH16 16 66908122 66918984 FALSE 1109 -0.33919625732687 44 66884321 67009101 0.18904974046126 3 NA 0.18904974046126 3 NA 124780 NA 7 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH17 8 94127171 94217303 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 17 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH18 5 19472951 20575873 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH19 18 66501083 66604138 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH2 18 27950966 28177446 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH20 18 61333582 61555773 FALSE 1263 -0.646518978860434 22 61490571 62978355 1 2 1 1 2 1 1487784 1 7 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH22 20 46173733 46308498 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH23 10 71396934 71815947 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 92 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH24 14 23047062 23057538 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH26 20 59958427 60034011 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH3 16 68636189 68722616 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 17 5 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH4 20 61252426 61940617 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH5 16 66366622 66404786 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH6 5 31193750 31329146 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 15 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH7 18 65750252 65890341 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH8 16 61647242 62037035 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 17 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDH9 5 26880600 27121150 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDHR1 10 84194635 84219621 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 21 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDHR2 5 176542511 176595974 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 33 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDHR3 7 105876796 106033773 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 22 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDHR4 3 49790732 49799835 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDHR5 11 616565 626078 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDIP1 16 4510675 4538828 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDIPT 16 29858357 29863736 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK1 10 60778331 60794852 FALSE 719 1.51082542694571 98 60778512 60794742 0.593481580287395 12 NA 0.593481580287395 12 NA 16230 NA 1 11 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK10 16 89680737 89696364 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK11A 1 1702730 1724324 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 17 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK11B 1 1635227 1659012 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK12 17 39461511 39564907 TRUE 1171 1.29432393535056 90 39461609 39530582 0.593481580287395 10 NA 0.593481580287395 10 NA 68973 NA 1 41 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK13 7 39949646 40099580 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK14 7 90466424 91210590 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 15 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK15 2 201790461 201895550 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK16 23 47217860 47229997 FALSE 1474 -0.325556439763856 44 47199062 47467488 0.18904974046126 3 NA 0.18904974046126 3 NA 268426 NA 5 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK17 12 96278261 96400560 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK18 1 205504595 205532793 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK19 6 110609978 110815958 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK2 12 55966769 55972784 FALSE 883 1.69957518704436 103 55966810 55972812 0.593481580287395 14 NA 0.593481580287395 14 NA 6002 NA 2 11 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK20 9 87966441 87974753 FALSE 677 0.469735690033603 70 87919933 88138273 0.569287299993522 5 NA 0.569287299993522 5 NA 218340 NA 2 9 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK2AP1 12 123260971 123272334 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK2AP2 11 67506497 67508649 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK3 17 76000906 76005999 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK4 12 57747727 57756013 FALSE 893 0.77963013665916 78 57748272 57766231 0.593481580287395 7 NA 0.593481580287395 7 NA 17959 NA 4 16 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK5 7 151053812 151058530 FALSE 574 -0.383372083232003 41 150947860 151064227 NA 2 NA NA 2 NA 116367 NA 7 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK5R1 17 32486619 32491256 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK5R2 2 218959655 218962162 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK5RAP1 20 33358839 33401561 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK5RAP2 9 120388869 120580170 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 43 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK5RAP3 17 47967810 47981774 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK6 7 92604921 92836594 FALSE 544 3.04363450400646 135 92600018 92615172 0.593481580287395 37 NA 0.593481580287395 37 NA 15154 NA 1 59 10 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK7 5 69234795 69277430 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK8 13 26254104 26405238 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDK9 9 127785679 127790787 FALSE 693 2.26579655429282 120 127786098 127790751 0.593481580287395 21 NA 0.593481580287395 21 NA 4653 NA 1 14 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKAL1 6 20534457 21232404 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKL1 14 50329404 50416461 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKL2 4 75578005 75630716 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKL3 5 134286350 134371047 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKL4 2 39175646 39229588 FALSE 129 -0.788642704622343 18 39178582 42057703 0.387809979850725 1 0 0.387809979850725 1 0 2879121 1 7 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKL5 23 18425583 18653629 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN1A 6 36676460 36687339 TRUE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 15 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN1B 12 12715058 12722371 TRUE 853 2.29817683767316 121 12717523 12724075 0.593481580287395 21 NA 0.593481580287395 21 NA 6552 NA 1 18 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN1C 11 2883213 2885773 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN2A 9 21967753 21995301 TRUE 657 1.16053067495574 85 21854730 22009629 0.593481580287395 9 NA 0.593481580287395 9 NA 154899 NA 4 19 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN2AIP 4 183444591 183448198 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN2AIPNL 5 134402087 134411898 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN2B 9 22002903 22009363 TRUE 657 1.16053067495574 85 21854730 22009629 0.593481580287395 9 NA 0.593481580287395 9 NA 154899 NA 4 17 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN2C 1 50960745 50974633 TRUE 20 1.12184752940728 84 50959214 50976318 0.593481580287395 9 NA 0.593481580287395 9 NA 17104 NA 2 18 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN2D 19 10566462 10569059 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDKN3 14 54396849 54420218 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDNF 10 14819250 14838575 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDO1 5 115804733 115816954 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDON 11 125955796 126063335 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 26 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDPF1 22 46244011 46250679 FALSE 1449 -0.0528806791342838 56 46219811 46262539 0.593443012170704 3 NA 0.593443012170704 3 NA 42728 NA 3 3 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDR1 23 140783578 140784366 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDR2 16 22345936 22437165 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDR2L 17 74987632 75005800 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDRT1 17 15565483 15619512 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 15 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDRT15 17 14235673 14236862 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 4 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDRT15L2 17 20579724 20580911 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDRT4 17 15436015 15503608 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDS1 4 84582979 84651338 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDS2 20 5126786 5197887 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDSN 6 31115090 31120446 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 7 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDT1 16 88803213 88809258 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDV3 3 133573730 133590261 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDX1 5 150166795 150184558 FALSE 406 -0.544352612252152 31 150166967 150399004 NA 2 NA NA 2 NA 232037 NA 5 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDX2 13 27962137 27971139 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDX4 23 73447254 73455245 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDYL 6 4706159 4955551 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CDYL2 16 80597906 80804329 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM1 19 42507304 42561234 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM16 19 44699151 44710714 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM18 19 51478622 51490952 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM19 19 44662278 44684359 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM20 19 44501677 44529788 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM21 19 41549518 41586844 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM3 19 41796437 41811553 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM4 19 41618971 41627074 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM5 19 41708585 41729798 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 14 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM6 19 41750977 41772208 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM7 19 41673307 41706976 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEACAM8 19 42580241 42595055 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEBPA 19 33299934 33302564 TRUE 1328 0.231806776258723 64 33205703 33391273 0.593443012170704 4 NA 0.593443012170704 4 NA 185570 NA 5 10 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEBPB 20 50190734 50192689 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEBPD 8 47736909 47739086 FALSE 614 0.518796033232449 71 47737362 47959998 0.593481580287395 5 NA 0.593481580287395 5 NA 222636 NA 2 3 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEBPE 14 23117304 23119616 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEBPG 19 33373330 33382686 FALSE 1328 0.231806776258723 64 33205703 33391273 0.593443012170704 4 NA 0.593443012170704 4 NA 185570 NA 5 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEBPZ 2 37201612 37231713 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEBPZOS 2 37196488 37216193 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CECR2 22 17359949 17558149 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 27 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEL 9 133061978 133071861 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELA1 12 51328443 51346679 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELA2A 1 15456728 15472091 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELA2B 1 15465909 15491400 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELA3A 1 22001656 22012539 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELA3B 1 21977021 21998642 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELF1 11 47465933 47565569 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELF2 10 10798397 11336675 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELF3 1 151702404 151716814 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELF4 18 37243047 37566037 FALSE 1251 -1.04542132491447 9 37067359 37565623 0.593443012170704 1 0 0.593443012170704 1 0 498264 1 2 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELF5 19 3224703 3297076 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELF6 15 72284727 72320129 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELSR1 22 46360834 46537170 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 57 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELSR2 1 109250019 109275750 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 52 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CELSR3 3 48636469 48662915 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 57 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEMIP 15 80779343 80951776 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEMIP2 9 71683366 71816690 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 26 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEMP1 16 2530035 2531417 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEND1 11 787104 790123 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPA 2 26764289 26801067 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 16 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPB 20 3783851 3786690 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPBD1 16 89969773 89972832 FALSE 1132 -0.862602881667713 15 89949513 90075819 0.449390955025597 1 0 0.449390955025597 1 0 126306 1 5 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPC 4 67468748 67545606 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPE 4 103105806 103198409 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 60 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPF 1 214603195 214664588 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 46 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPH 5 69189548 69210357 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPI 23 101098218 101163681 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPJ 13 24882284 24922889 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPK 5 65517766 65563171 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPL 1 173799550 173824720 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPM 22 41938721 41947164 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPN 16 81006498 81033114 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPO 2 24793136 24822376 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPP 9 92325484 92620533 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 49 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPQ 6 49463378 49493107 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 8 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPS 1 10430443 10442809 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPS-CORT 1 10430102 10452153 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPT 16 67828157 67847811 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPU 4 184694618 184734133 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 14 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPV 17 16342534 16353656 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPVL3 23 51617024 51618968 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPW 6 126340174 126348875 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CENPX 17 82018702 82024107 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP104 1 3812081 3857214 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP112 17 65635538 66192084 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 27 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP120 5 123344885 123423592 FALSE 392 -0.336901155452395 44 122775231 124648866 0.18904974046126 3 NA 0.18904974046126 3 NA 1873635 NA 7 23 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP126 11 101915015 102001058 FALSE 811 -0.646672265477621 25 101453039 102081219 0.276933305076759 1 0 0.276933305076759 1 0 628180 1 4 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP128 14 80476983 80959517 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 28 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP131 17 81189593 81222999 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 27 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP135 4 55948871 56033363 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 25 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP152 15 48712928 48811146 FALSE 1025 0.0668329076362969 60 48446723 48767313 0.593443012170704 3 NA 0.593443012170704 3 NA 320590 NA 2 33 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP162 6 84124241 84227635 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 32 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP164 11 117314557 117413268 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 36 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP170 1 243124428 243255348 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 29 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP170B 14 104865280 104896770 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 29 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP19 3 196706277 196712293 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP192 18 12991362 13125052 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 53 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP250 20 35455164 35519280 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 45 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP290 12 88049014 88142216 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 57 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP295 11 93661639 93730358 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 44 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP295NL 17 78870910 78903217 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP350 1 179954738 180114880 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 53 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP41 7 130393771 130442433 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 12 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP44 4 174283677 174333380 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP55 10 93496632 93529092 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP57 11 95789965 95832693 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP57L1 6 109095110 109163932 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP63 3 134485721 134575017 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP68 2 65056366 65087004 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP70 3 138494344 138594538 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP72 5 612272 667168 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 16 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP76 18 12661833 12702777 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP78 9 78236062 78279690 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 18 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP83 12 94306449 94459988 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP85 1 26234200 26278808 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP85L 6 118460772 118710075 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP89 19 32875925 32971991 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 20 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP95 17 64506588 64542461 FALSE 1215 -0.310157730541577 44 64323838 64858765 0.18904974046126 3 NA 0.18904974046126 3 NA 534927 NA 7 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEP97 3 101723925 101770562 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CEPT1 1 111139627 111185102 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CER1 9 14719724 14722717 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERCAM 9 128411751 128437351 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERK 22 46684411 46738261 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERKL 2 181536676 181680665 FALSE 192 1.35255176246553 91 181457377 181539230 0.593481580287395 10 NA 0.593481580287395 10 NA 81853 NA 2 29 7 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERS1 19 18868545 18896727 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 13 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERS2 1 150960583 150975004 FALSE 56 1.18903047908319 87 150926492 150966523 0.593481580287395 9 NA 0.593481580287395 9 NA 40031 NA 2 22 3 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERS3 15 100400395 100544995 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERS4 19 8206736 8262421 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERS5 12 50129306 50167533 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CERS6 2 168455862 168775137 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CES1 16 55802851 55833337 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CES2 16 66934444 66945096 FALSE 1109 -0.33919625732687 44 66884321 67009101 0.18904974046126 3 NA 0.18904974046126 3 NA 124780 NA 7 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CES3 16 66961237 66975148 FALSE 1109 -0.33919625732687 44 66884321 67009101 0.18904974046126 3 NA 0.18904974046126 3 NA 124780 NA 7 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CES4A 16 66988589 67009758 FALSE 1109 -0.33919625732687 44 66884321 67009101 0.18904974046126 3 NA 0.18904974046126 3 NA 124780 NA 7 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CES5A 16 55846154 55956031 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CETN1 18 580357 582114 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CETN2 23 152826973 152830777 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CETN3 5 90392261 90409786 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CETP 16 56961850 56983845 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP100 3 126394939 126436556 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP126 1 161364731 161367874 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP157 9 127706989 127716002 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP161 15 81007033 81149175 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP20 16 58113588 58129450 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP206 6 87407983 87464465 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP221 2 119544432 119662251 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP298 21 32592079 32612866 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP299 4 80335720 80963756 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP300 11 102047443 102084560 FALSE 811 -0.646672265477621 25 101453039 102081219 0.276933305076759 1 0 0.276933305076759 1 0 628180 1 4 7 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP36 2 55519604 55545879 FALSE 138 -0.855981369957181 15 55336671 58154699 0.449390955025597 1 0 0.449390955025597 1 0 2818028 1 7 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP410 21 44328944 44339402 FALSE 1411 -0.796790869313366 18 44231407 44533921 0.387809979850725 1 0 0.387809979850725 1 0 302514 1 8 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP43 10 104129888 104232362 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 39 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP44 3 113286947 113441610 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 37 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP45 1 159872364 159900163 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP46 10 132808392 132942823 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 61 11 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP47 23 35919734 36385319 FALSE 1463 -0.0126664078313421 56 34129908 36073394 0.593443012170704 3 NA 0.593443012170704 3 NA 1943486 NA 5 68 4 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP52 17 9576627 9643459 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP53 18 50227193 50266522 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP54 12 96489571 96875555 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 68 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP57 1 43172149 43254358 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 29 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP58 10 104353764 104455090 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP61 20 20052514 20360702 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP65 2 219002846 219041527 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 43 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP69 7 90245174 90311063 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 25 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP70 10 73253759 73358859 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP73 12 113149858 113159276 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP74 1 1921951 2003837 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 39 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP77 9 132410043 132573317 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP97 4 185159665 185209504 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP97D1 17 43780435 43787612 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFAP99 4 2418974 2462942 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFB 6 31945650 31952084 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFC1 2 130592168 130599575 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFD 19 859643 863630 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFDP1 16 75293698 75433485 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFH 1 196651878 196747504 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFHR1 1 196819757 196832189 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFHR2 1 196943756 196959226 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFHR3 1 196774795 196795406 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFHR4 1 196888014 196918713 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFHR5 1 196977556 197009674 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFI 4 109740694 109802179 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFL1 11 65823022 65862026 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 21 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFL2 14 34706769 34714823 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFLAR 2 201116104 201176687 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFP 23 47623172 47630305 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CFTR 7 117465784 117715971 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 35 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGA 6 87085498 87095406 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGAS 6 73413515 73452276 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGB1 19 49035610 49036895 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGB2 19 49031912 49033238 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGB3 19 49022869 49024333 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGB5 19 49043884 49045311 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGB7 19 49054275 49058860 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGB8 19 49047638 49049106 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGGBP1 3 88051944 88149885 FALSE 271 -0.374182784035321 41 87990792 88156503 NA 2 NA NA 2 NA 165711 NA 4 19 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGN 1 151510510 151538692 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGNL1 15 57375967 57550727 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 24 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGREF1 2 27098889 27119115 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 11 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CGRRF1 14 54509812 54539309 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CH25H 10 89205629 89207314 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHAC1 15 40952962 40956519 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHAC2 2 53767792 53775196 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHAD 17 50464496 50468966 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHADL 22 41229510 41240934 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHAF1A 19 4402662 4445018 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 20 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHAF1B 21 36385378 36419015 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHAMP1 13 114314335 114337626 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHAT 10 49609095 49665104 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD1 10 73782047 73783652 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD10 22 23765834 23768443 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD2 7 56101569 56106576 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD3 7 132784868 133082088 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD4 3 14112077 14124870 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD5 2 112584240 112589275 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD6 3 126704220 126960406 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHCHD7 8 56211686 56218798 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD1 5 98853985 98928957 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 40 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD1L 1 147242641 147295766 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD2 15 92900189 93028005 FALSE 1058 1.4078319488902 93 92900318 93052532 0.593481580287395 11 NA 0.593481580287395 11 NA 152214 NA 3 61 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD3 17 7884806 7912760 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 42 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD4 12 6570082 6614524 FALSE 837 1.83289084483723 107 6570294 6608462 0.593481580287395 15 NA 0.593481580287395 15 NA 38168 NA 2 49 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD5 1 6101793 6180123 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 46 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD6 20 41402101 41618494 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 50 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD7 8 60678778 60868028 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 51 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD8 14 21385194 21456126 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 48 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHD9 16 53055033 53329150 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 55 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHDH 3 53812335 53846390 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHEK1 11 125625136 125676255 TRUE 820 1.30056978887196 90 125625913 125672621 0.593481580287395 10 NA 0.593481580287395 10 NA 46708 NA 2 31 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHEK2 22 28687743 28742422 TRUE 1427 -0.30656290382667 44 28687879 28878609 0.18904974046126 3 NA 0.18904974046126 3 NA 190730 NA 4 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHERP 19 16517889 16542530 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHFR 12 132822187 132956304 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHGA 14 92923080 92935293 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHGB 20 5911430 5925361 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 11 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHI3L1 1 203178931 203186749 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHI3L2 1 111200771 111243440 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHIA 1 111290862 111320566 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHIC1 23 73563200 73687102 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHIC2 4 54009789 54064690 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHID1 11 867860 915058 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHIT1 1 203212827 203273641 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHKA 11 68052859 68121444 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHKB 22 50578949 50601455 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHKB-CPT1B 22 50568869 50582965 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 29 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHL1 3 196596 409417 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHM 23 85861180 86047562 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHML 1 241628853 241640254 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP1A 16 89644431 89657845 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP1B 18 11851396 11854449 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP2A 19 58551566 58555124 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP2B 3 87227271 87255548 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP3 2 86503431 86563479 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP4A 14 24209583 24213869 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP4B 20 33811304 33854366 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP4C 8 81732434 81759515 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP5 9 33264879 33282069 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP6 17 80991598 81009517 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHMP7 8 23243637 23262000 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHN1 2 174799363 175005369 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHN2 7 29146569 29514328 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 20 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHODL 21 17901263 18267373 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHORDC1 11 90201160 90223364 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHP1 15 41230839 41281890 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHP2 16 23754627 23758951 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHPF 2 219538947 219543787 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHPF2 7 151232489 151238827 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHPT1 12 101696947 101744140 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRAC1 8 140511298 140517137 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRD 3 184380073 184390736 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRDL1 23 110673856 110795819 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRDL2 11 74696429 74731385 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRFAM7A 15 30357766 30393849 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRM1 11 62908679 62921807 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRM2 7 136868669 137020255 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRM3 1 239386565 239915452 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRM4 11 46385098 46386608 FALSE 775 -0.488983327470503 37 45935757 46543340 NA 2 NA NA 2 NA 607583 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRM5 15 33968720 34067457 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA1 2 174747592 174787935 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA10 11 3665587 3671384 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA2 8 27459761 27479883 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 9 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA3 15 78593052 78621295 FALSE 1042 -0.320554647215119 44 78590626 78800500 0.18904974046126 3 NA 0.18904974046126 3 NA 209874 NA 4 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA4 20 63343223 63378401 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA5 15 78565520 78595269 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 9 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA6 8 42752620 42796392 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA7 15 31923438 32173018 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNA9 4 40335329 40355217 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNB1 17 7445061 7457707 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNB2 1 154567781 154580026 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNB3 8 42697376 42737407 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNB4 15 78624119 78727754 FALSE 1042 -0.320554647215119 44 78590626 78800500 0.18904974046126 3 NA 0.18904974046126 3 NA 209874 NA 4 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRND 2 232525993 232536667 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNE 17 4897774 4934438 FALSE 1140 -0.117427632115161 54 4890662 4939168 0.569455701337318 3 NA 0.569455701337318 3 NA 48506 NA 5 22 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHRNG 2 232539727 232546403 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST1 11 45648877 45665622 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST10 2 100391860 100417656 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST11 12 104455295 104762014 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST12 7 2403560 2448483 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST13 3 126524283 126543291 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST14 15 40470998 40474571 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST15 10 124007666 124093607 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST2 3 143119331 143124014 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST3 10 71964365 72013564 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST4 16 71525233 71538746 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST5 16 75528535 75535247 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST6 16 75472052 75495445 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST7 23 46573784 46598408 FALSE 1472 -0.741792499922808 18 45151710 47024874 0.387809979850725 1 0 0.387809979850725 1 0 1873164 1 7 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST8 19 33621955 33773509 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHST9 18 26906481 27185317 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHSY1 15 101175723 101251932 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHSY3 5 129904472 130186634 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHTF18 16 788046 800737 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 26 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHTF8 16 69118010 69132584 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHTOP 1 153633982 153646306 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHUK 10 100188298 100229619 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 21 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHURC1 14 64914361 64944591 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CHURC1-FNTB 14 64914485 65061803 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 32 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIAO1 2 96266132 96273349 FALSE 154 2.2924898502595 121 96248714 96266359 0.593481580287395 21 NA 0.593481580287395 21 NA 17645 NA 2 9 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIAO2A 15 64072559 64094018 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIAO2B 16 66932055 66934423 FALSE 1109 -0.33919625732687 44 66884321 67009101 0.18904974046126 3 NA 0.18904974046126 3 NA 124780 NA 7 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIAO3 16 729753 741329 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIAPIN1 16 57428169 57447528 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIART 1 150282543 150287093 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIB1 15 90229975 90234047 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIB2 15 78104606 78131544 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIB3 19 16161368 16173525 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIB4 2 26581202 26641368 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIC 19 42268537 42295797 TRUE 1341 2.24654546331644 120 42269303 42295729 0.593481580287395 21 NA 0.593481580287395 21 NA 26426 NA 1 45 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIDEA 18 12254319 12277595 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIDEB 14 24305096 24311430 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIDEC 3 9866711 9880254 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIITA 16 10866222 10943021 TRUE 1086 1.33481749151602 90 10877291 10923252 0.593481580287395 10 NA 0.593481580287395 10 NA 45961 NA 1 27 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CILP 15 65194758 65211488 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CILP2 19 19538248 19546659 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CINP 14 102341102 102362916 FALSE 996 -0.579401018683582 31 102193509 102726551 NA 2 NA NA 2 NA 533042 NA 7 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIP2A 3 108549869 108589644 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIPC 14 77098097 77117287 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIR1 2 174348022 174395715 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIRBP 19 1259384 1274880 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CISD1 10 58269058 58289586 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CISD2 4 102868974 102892807 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CISD3 17 38730235 38735044 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CISH 3 50606490 50611831 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIT 12 119685790 119877291 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 48 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CITED1 23 72301638 72307187 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CITED2 6 139371807 139374620 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CITED4 1 40861051 40862366 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CIZ1 9 128166064 128204383 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 22 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKAP2 13 52455429 52476628 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKAP2L 2 112736607 112764677 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 14 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKAP4 12 106237877 106304279 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKAP5 11 46743048 46846308 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 44 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKB 14 103519659 103523111 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 7 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKLF 16 66552563 66566251 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKLF-CMTM1 16 66552587 66579135 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKM 19 45306414 45322977 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKMT1A 15 43692886 43699222 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKMT1B 15 43593054 43604901 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 14 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKMT2 5 81233285 81266397 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKS1B 1 154974653 154979249 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CKS2 9 89311198 89316703 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLASP1 2 121337776 121649587 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 43 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLASP2 3 33496245 33718356 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 43 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLASRP 19 45039040 45070956 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLBA1 14 104985775 105010482 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLC 19 39731250 39738028 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCA1 1 86468368 86500289 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCA2 1 86424086 86456558 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 19 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCA4 1 86547078 86580754 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCC1 1 108929508 108963457 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCF1 11 67364168 67374177 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCN1 7 143316126 143352083 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 26 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCN2 3 184346185 184361651 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 22 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCN3 4 169612633 169723673 FALSE 360 -0.641187509684452 28 169424742 172229692 NA 2 NA NA 2 NA 2804950 NA 6 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCN4 23 10156945 10237660 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCN5 23 49922615 50099235 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCN6 1 11806096 11848079 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCN7 16 1444934 1475580 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 26 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCNKA 1 16018875 16034050 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 21 8 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLCNKB 1 16043736 16057308 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 21 8 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN1 3 190305701 190322475 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN10 13 95433604 95579759 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN11 3 170418865 170454733 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN12 7 90383721 90513402 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN14 21 36460621 36576569 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN15 7 101232092 101238820 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN16 3 190322541 190412143 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN17 21 30165564 30166756 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN18 3 137998735 138033655 FALSE 288 -0.196524450016373 52 136336203 138077598 0.426118104232275 3 NA 0.426118104232275 3 NA 1741395 NA 8 8 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN19 1 42733093 42740254 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN2 23 106900164 106930861 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN20 6 155264013 155276548 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN22 4 183318194 183320774 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN23 8 8701938 8704106 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN24 4 183321764 183322426 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN25 11 113779747 113780500 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN3 7 73768997 73770270 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN34 23 9967358 9968352 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN4 7 73799542 73832693 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN5 22 19523024 19527545 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN6 16 3014712 3020071 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN7 17 7259903 7263983 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN8 21 30214006 30216073 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDN9 16 3012456 3014505 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDND1 3 98497912 98523066 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 10 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLDND2 19 51367098 51369003 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC10A 17 7074537 7080307 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC11A 19 50723329 50725718 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC12A 12 9951316 9995694 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC12B 12 10010627 10018619 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC14A 14 38254103 38256369 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC16A 16 10944488 11182189 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC17A 19 14583084 14611157 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC18A 16 69950705 69964452 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 6 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC18B 16 74408270 74421953 FALSE 1118 0.382602050652098 68 74391834 74453215 0.389403197422789 6 NA 0.389403197422789 6 NA 61381 NA 3 13 6 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC18C 16 70173322 70187361 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC19A 16 19285739 19322145 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC1A 12 10069554 10111627 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC1B 12 9985642 10013424 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC2A 12 9898673 9932381 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC2B 12 9852984 9870136 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC2D 12 9664969 9699555 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC2L 7 139523856 139544984 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC3A 16 78022515 78066761 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC3B 3 45001548 45036071 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC4A 12 8123632 8138607 FALSE 842 -0.749785793032381 18 7924480 8175292 0.387809979850725 1 0 0.387809979850725 1 0 250812 1 7 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC4C 12 7729415 7751605 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC4D 12 8509475 8522366 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC4E 12 8533305 8540963 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC4F 2 70808643 70820600 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC4G 19 7728957 7733906 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC4M 19 7763149 7769605 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC5A 7 141927357 141947007 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC6A 12 8455926 8478330 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC7A 12 10116777 10130258 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLEC9A 12 10030677 10066027 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLECL1 12 9715860 9733299 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLGN 4 140388455 140427968 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLHC1 2 55174791 55232563 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIC1 6 31730581 31739763 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIC2 23 155276211 155334657 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIC3 9 136994635 136996803 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIC4 1 24745357 24844324 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIC5 6 45880827 46080348 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIC6 21 34669389 34718227 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLINT1 5 157785743 157859175 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIP1 12 122271432 122422632 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIP2 7 74289475 74405943 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIP3 19 36014660 36033343 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLIP4 2 29097705 29189643 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLK1 2 200853009 200864744 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLK2 1 155262868 155278491 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLK3 15 74598500 74645414 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLK4 5 178602664 178630615 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLLU1OS 12 92420094 92428148 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLMN 14 95181940 95319906 FALSE 991 -0.518304757020061 34 95191561 95544037 NA 2 NA NA 2 NA 352476 NA 3 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLMP 11 123069865 123195281 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLN3 16 28474111 28495575 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLN5 13 76990660 77019143 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLN6 15 68206992 68257211 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLN8 8 1755778 1801711 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLNK 4 10486395 10684865 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 18 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLNS1A 11 77514936 77637805 FALSE 804 1.53301766490883 98 77322178 77590086 0.593481580287395 12 NA 0.593481580287395 12 NA 267908 NA 3 11 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLOCK 4 55427903 55547138 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLP1 11 57648992 57661868 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPB 11 72285495 72434680 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPP 19 6361452 6368910 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPS 6 35794982 35797344 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPSL1 6 35781017 35793675 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPSL2 6 35776594 35779552 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPTM1 19 44954585 44993341 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPTM1L 5 1317744 1345099 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLPX 15 65148219 65185342 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLRN1 3 150926163 150972999 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLRN2 4 17515165 17527104 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLRN3 10 127877841 127892947 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLSPN 1 35720218 35769967 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 29 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLSTN1 1 9729026 9824526 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLSTN2 3 139935185 140577397 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLSTN3 12 7129698 7158945 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 21 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLTA 9 36190856 36304781 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLTB 5 176392455 176416569 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLTC 17 59619689 59696956 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 33 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLTCL1 22 19179473 19291716 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 35 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLTRN 23 15627318 15675012 FALSE 1455 0.162648419400782 63 15589392 15825738 0.54220702508464 4 NA 0.54220702508464 4 NA 236346 NA 5 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLU 8 27596917 27615031 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLUAP1 16 3500924 3539048 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLUH 17 2689386 2712663 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 26 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLUL1 18 596988 650334 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLVS1 8 61057158 61501645 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLVS2 6 122995971 123072927 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CLYBL 13 99606669 99897134 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMA1 14 24505353 24508265 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMAS 12 22046174 22065674 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMBL 5 10275875 10308026 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMC1 3 28241584 28325142 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMC2 16 80966448 81020270 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMC4 23 155061622 155071362 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMIP 16 81445170 81711762 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMKLR1 12 108288044 108339341 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMPK1 1 47333797 47378839 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMPK2 2 6840570 6866635 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMSS1 3 99817834 100181732 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM1 16 66566393 66579137 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM2 16 66579448 66588275 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM3 16 66603874 66613892 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM4 16 66614750 66696707 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM5 14 23376773 23379772 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM6 3 32481312 32503408 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM7 3 32391671 32483067 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTM8 3 32238679 32370325 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTR1 6 37433219 37482827 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMTR2 16 71281389 71289715 TRUE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CMYA5 5 79689877 79800240 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 56 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNBD1 8 86866442 87615219 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNBD2 20 35954564 36030700 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNBP 3 129169484 129183922 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNDP1 18 74534440 74587212 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNDP2 18 74495816 74523454 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNEP1R1 16 50024410 50037088 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNFN 19 42387019 42390287 FALSE 1342 -0.424583186963262 37 42297126 42410557 NA 2 NA NA 2 NA 113431 NA 6 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNGA1 4 47935977 48016672 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNGA2 23 151738451 151745304 FALSE 1523 0.354095779845526 68 151672691 151744394 0.389403197422789 6 NA 0.389403197422789 6 NA 71703 NA 4 11 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNGA3 2 98346155 98398601 FALSE 157 -0.743450543902085 18 97757127 98389721 0.387809979850725 1 0 0.387809979850725 1 0 632594 1 3 12 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNGA4 11 6234765 6244429 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNGB1 16 57882340 57971116 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 36 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNGB3 8 86553977 86743675 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 23 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNIH1 14 54423560 54441431 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNIH2 11 66278190 66285301 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNIH3 1 224434660 224740549 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNIH4 1 224356850 224379459 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNKSR1 1 26177403 26189886 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNKSR2 23 21372801 21654695 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 26 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNKSR3 6 154387504 154510659 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNMD 13 52703264 52739812 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNN1 19 11538717 11550323 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNN2 19 1026581 1039068 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNN3 1 94896949 94927278 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNNM1 10 99329099 99394330 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 18 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNNM2 10 102918293 103090221 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 17 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNNM3 2 96816245 96833911 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNNM4 2 96760902 96811891 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT1 16 58519951 58629886 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 50 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT10 3 32685145 32773875 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT11 2 101252802 101270316 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT2 12 70242994 70354993 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT3 19 54137717 54155708 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 18 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT4 7 135361795 135510127 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT6 5 180494412 180578405 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT6L 4 77713387 77819615 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT7 8 17224964 17246878 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT8 5 154857553 154876793 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNOT9 2 218568580 218597080 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNP 17 41966741 41977731 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNPPD1 2 219171897 219178106 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNPY1 7 155474206 155555450 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNPY2 12 56309842 56316336 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNPY3 6 42929192 42939287 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNPY4 7 100119613 100125511 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNR1 6 88139864 88166359 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNR2 1 23870526 23913362 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNRIP1 2 68284171 68320051 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNST 1 246566444 246668584 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTD1 17 42798792 42811587 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTD2 19 40222208 40226697 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTF 11 58622673 58625733 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTFR 9 34551432 34590140 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTLN 9 17134982 17503923 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 30 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTN1 12 40692442 41072418 FALSE 866 -0.81872346908015 14 40514460 42098021 0.593443012170704 1 0 0.593443012170704 1 0 1583561 1 4 26 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTN2 1 205042937 205078284 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 23 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTN3 3 74262568 74521140 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTN4 3 2098813 3057956 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTN5 11 99020953 100358885 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTN6 3 1092576 1404217 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 24 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTNAP1 17 42682613 42699814 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 29 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTNAP2 7 146116002 148420998 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTNAP3 9 39072767 39288315 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 21 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTNAP3B 9 41890314 42129510 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 16 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTNAP4 16 76277278 76559238 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTNAP5 2 124025287 124915287 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTRL 9 121074863 121177610 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 48 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CNTROB 17 7932101 7949918 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 20 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COA1 7 43608456 43729717 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COA3 17 42795147 42798704 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COA4 11 73872667 73876988 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COA5 2 98599310 98608515 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COA6 1 234373456 234384049 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COA7 1 52684451 52698366 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COASY 17 42561467 42566277 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 12 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COBL 7 51016212 51316818 FALSE 533 -0.636373738560084 28 50463408 55129820 NA 2 NA NA 2 NA 4666412 NA 8 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COBLL1 2 164653624 164843679 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COCH 14 30874514 30895065 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG1 17 73192632 73208507 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG2 1 230642489 230693982 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG3 13 45464898 45536630 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG4 16 70480568 70523565 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG5 7 107201555 107564514 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 29 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG6 13 39655627 39791665 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG7 16 23388493 23453180 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COG8 16 69320140 69339667 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 18 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COIL 17 56938187 56961054 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL10A1 6 116118923 116158747 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL11A1 1 102876467 103108872 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 68 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL11A2 6 33162681 33192499 FALSE 455 2.09901747792624 116 33080680 33163776 0.593481580287395 18 3 0.593481580287395 18 3 83096 15 3 62 9 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL12A1 6 75084326 75206051 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 75 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL13A1 10 69801867 69964275 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 41 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL14A1 8 120059780 120372036 FALSE 635 -0.240283647650564 49 119593820 120497470 0.331933131290263 3 NA 0.331933131290263 3 NA 903650 NA 7 47 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL15A1 9 98943179 99070792 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 44 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL16A1 1 31652247 31704319 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 67 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL17A1 10 104031286 104085957 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 55 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL18A1 21 45405137 45513720 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 53 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL19A1 6 69866571 70209976 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 49 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL1A1 17 50183289 50201632 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 46 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL1A2 7 94394561 94431232 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 51 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL20A1 20 63293186 63334851 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 34 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL21A1 6 56056590 56394094 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 33 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL22A1 8 138588235 138914006 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 67 8 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL23A1 5 178237618 178590555 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL24A1 1 85729233 86156943 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 65 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL25A1 4 108808725 109302752 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 41 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL26A1 7 101362820 101559024 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 13 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL27A1 9 114155560 114312511 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 68 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL28A1 7 7356203 7535853 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 38 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL2A1 12 47972965 48004554 FALSE 871 0.865496962004128 80 47973210 48004499 0.593481580287395 7 NA 0.593481580287395 7 NA 31289 NA 1 59 6 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL3A1 2 188974320 189012746 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 53 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL4A1 13 110148963 110307233 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 53 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL4A2 13 110305812 110513209 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 56 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL4A3 2 227164565 227314792 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 52 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL4A3BP 5 75356345 75512138 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL4A4 2 227002711 227164453 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 49 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL4A5 23 108439844 108697545 FALSE 1501 -0.762385617080141 18 108192528 108692792 0.387809979850725 1 0 0.387809979850725 1 0 500264 1 2 50 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL4A6 23 108155607 108439497 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 50 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL5A1 9 134641774 134844843 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 69 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL5A2 2 189031896 189225312 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 57 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL5A3 19 9959561 10010471 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 61 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL6A1 21 45981737 46005050 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 34 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL6A2 21 46098097 46132849 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 33 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL6A3 2 237324003 237414375 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 64 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL6A5 3 130345516 130484844 FALSE 284 0.788214999305254 79 130345820 130484860 0.593481580287395 7 NA 0.593481580287395 7 NA 139040 NA 1 62 8 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL6A6 3 130560334 130678155 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 51 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL7A1 3 48564073 48595267 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 92 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL8A1 3 99638475 99799226 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL8A2 1 36095236 36125220 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL9A1 6 70215061 70303083 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 38 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL9A2 1 40300487 40317813 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COL9A3 20 62816244 62841159 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 31 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COLCA2 11 111298555 111308735 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COLEC10 8 118995452 119106582 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COLEC11 2 3594832 3644644 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COLEC12 18 316740 500722 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COLGALT1 19 17555594 17583162 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COLGALT2 1 183929854 184037729 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COLQ 3 15450133 15521751 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD1 2 61888724 62147247 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD10 5 116084991 116412762 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD2 3 149738470 149752499 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD3 10 22315974 22320308 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD3-BMI1 10 22316388 22329542 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD4 15 75335891 75343224 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD5 8 144841042 144853736 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 11 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD6 13 75525219 75549439 FALSE 949 -0.79745272696754 18 72783611 75800864 0.387809979850725 1 0 0.387809979850725 1 0 3017253 1 7 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD7 20 32702691 32743997 FALSE 1373 0.921004845427493 81 32358286 32833703 0.593481580287395 7 NA 0.593481580287395 7 NA 475417 NA 7 8 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD8 4 47450796 47463719 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMMD9 11 36269284 36289449 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMP 19 18782773 18791314 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMT 22 19941607 19969975 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COMTD1 10 75233969 75236030 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COP1 1 175944831 176207493 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPA 1 160288686 160343400 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPB1 11 14443440 14500027 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPB2 3 139355600 139389732 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPE 19 18899514 18919397 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPG1 3 129249606 129277773 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPG2 7 130506238 130668748 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 13 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPRS 17 31851864 31859337 FALSE 1163 -0.787469030098252 18 31391904 31901587 0.387809979850725 1 0 0.387809979850725 1 0 509683 1 3 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS2 15 49106068 49155661 FALSE 1026 -0.585321086732959 28 48768195 49422724 NA 2 NA NA 2 NA 654529 NA 7 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS3 17 17246820 17281293 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS4 4 83034447 83075818 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS5 8 67043079 67083783 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS6 7 100088954 100092200 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS7A 12 6723741 6731875 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS7B 2 231781671 231809254 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS8 2 237085312 237100466 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPS9 2 240126563 240136807 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPZ1 12 54301202 54351849 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COPZ2 17 48026167 48038030 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ10A 12 56266858 56270966 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ10B 2 197453423 197475308 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ2 4 83261536 83284914 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ3 6 99369400 99394204 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ4 9 128322536 128334072 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ5 12 120503274 120534434 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ6 14 73949926 73963670 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ7 16 19067599 19080095 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ8A 1 226897536 226987545 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 16 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ8B 19 40691529 40718207 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COQ9 16 57447425 57461275 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORIN 4 47593998 47838106 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 24 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO1A 16 30182827 30189076 FALSE 1098 0.770455142983048 78 30114079 30194719 0.593481580287395 7 NA 0.593481580287395 7 NA 80640 NA 4 9 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO1B 11 67435510 67443821 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO1C 12 108645109 108731596 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO2A 9 98120975 98192640 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO2B 15 68578969 68727806 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO6 17 29614756 29622907 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO7 16 4354542 4425705 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 36 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORO7-PAM16 16 4340251 4420494 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 41 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CORT 1 10449719 10451902 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COTL1 16 84565594 84618077 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX10 17 14069496 14208677 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX11 17 54951902 54968785 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX14 12 50111979 50120457 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX15 10 99711844 99732100 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX16 14 70325081 70359731 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX17 3 119654513 119677454 FALSE 277 -0.549951694983867 31 119616037 119817077 NA 2 NA NA 2 NA 201040 NA 6 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX18 4 73052362 73069755 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX19 7 898778 975599 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX20 1 244835322 244845057 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX4I1 16 85798633 85807044 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX4I2 20 31637888 31645006 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX5A 15 74919791 74938168 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX5B 2 97646040 97648383 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX6A1 12 120438090 120440742 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX6A2 16 31427731 31428428 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX6B1 19 35648223 35658861 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX6B2 19 55349306 55354814 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX6C 8 99873200 99894062 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX7A1 19 36150922 36152869 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX7A2 6 75237675 75250323 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX7A2L 2 42333546 42425088 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX7B 23 77899438 77907373 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX7B2 4 46734827 46909235 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX7C 5 86617904 86620962 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX8A 11 63974607 63976543 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 COX8C 14 93347191 93348356 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CP 3 149162410 149222055 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPA1 7 130380339 130388114 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 11 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPA2 7 130266827 130289798 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPA3 3 148865256 148897196 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPA4 7 130293134 130324180 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPA5 7 130344816 130368730 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 11 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPA6 8 67422038 67746385 FALSE 620 -0.718103437128963 21 67271983 67746084 0.328777186374237 1 0 0.328777186374237 1 0 474101 1 2 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPAMD8 19 16892947 17026815 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 47 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPB1 3 148791102 148860187 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPB2 13 46053195 46105033 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPD 17 30378905 30469989 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPE 4 165361194 165498320 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPEB1 15 82543201 82648861 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPEB2 4 15002674 15070153 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPEB3 10 92046692 92291087 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPEB4 5 173888280 173961976 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPED1 7 120988677 121297444 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPHXL 16 75714224 75726442 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPLANE1 5 37106228 37249428 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 65 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPLANE2 1 16231700 16237162 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPLX1 4 784957 826198 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPLX2 5 175796310 175884020 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPLX3 15 74826547 74831802 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPLX4 18 59275156 59318649 FALSE 1261 -0.626771039159971 28 58934445 59897059 NA 2 NA NA 2 NA 962614 NA 7 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPM 12 68842197 68971570 FALSE 896 2.27010095138897 120 68808384 68845507 0.593481580287395 21 NA 0.593481580287395 21 NA 37123 NA 2 21 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPN1 10 100042193 100081877 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPN2 3 194339765 194351328 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 7 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE1 20 35626031 35664956 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE2 16 57092537 57148367 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE3 8 86514427 86561498 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE4 3 131533555 132285410 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE5 6 36740775 36840002 FALSE 462 -0.524992064635535 34 36717398 37027971 NA 2 NA NA 2 NA 310573 NA 7 24 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE6 14 24070837 24078100 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE7 16 89575768 89597246 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE8 12 38646822 38907430 FALSE 863 -0.717747500660561 19 38323881 40466037 0.593443012170704 1 0 0.593443012170704 1 0 2142156 1 8 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPNE9 3 9703807 9729908 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPO 2 206939554 206969474 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPOX 3 98579446 98593723 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPPED1 16 12659799 12804017 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPQ 8 96645227 97149654 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPS1 2 210477682 210679107 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 39 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPSF1 8 144393229 144409349 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 31 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPSF2 14 92121937 92172145 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPSF3 2 9423568 9473101 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPSF4 7 99438922 99457371 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPSF4L 17 73248449 73262352 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPSF6 12 69239537 69274358 FALSE 897 -0.511427456070603 34 68856545 69390172 NA 2 NA NA 2 NA 533627 NA 4 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPSF7 11 61402641 61430031 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPT1A 11 68754620 68844410 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPT1B 22 50568861 50578465 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 19 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPT1C 19 49690898 49713731 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPT2 1 53196429 53214197 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPTP 1 1324756 1328897 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPVL 7 28995231 29195451 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPXCR1 23 88747225 88754785 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPXM1 20 2794069 2800637 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPXM2 10 123706207 123940267 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 18 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CPZ 4 8592660 8619759 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 15 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CR1 1 207496147 207641765 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 36 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CR1L 1 207645113 207738416 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CR2 1 207454230 207489895 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRABP1 15 78340324 78348230 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRABP2 1 156699606 156705816 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRACR2A 12 3606633 3764819 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRACR2B 11 826144 831991 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 11 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRADD 12 93677375 93894840 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRAMP1 16 1612325 1677908 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRAT 9 129094810 129111189 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRB1 1 197268204 197478455 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRB2 9 123356170 123380324 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 24 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRB3 19 6463777 6467221 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRBN 3 3144628 3179727 TRUE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRCP 7 66114604 66154568 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRCT1 1 152514502 152516010 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREB1 2 207529737 207603431 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREB3 9 35732335 35737004 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREB3L1 11 46277661 46321422 FALSE 775 -0.488983327470503 37 45935757 46543340 NA 2 NA NA 2 NA 607583 NA 6 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREB3L2 7 137874979 138002067 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREB3L3 19 4153601 4173054 FALSE 1280 -0.209689282947919 52 4153710 4175107 0.426118104232275 3 NA 0.426118104232275 3 NA 21397 NA 2 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREB3L4 1 153967534 153974363 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREB5 7 28299321 28825894 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREBBP 16 3725054 3880726 TRUE 1079 -0.983453391074745 11 3616630 3725168 0.593443012170704 1 0 0.593443012170704 1 0 108538 1 3 69 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREBL2 12 12611827 12645108 FALSE 852 -0.515807943708335 34 12079259 12714091 NA 2 NA NA 2 NA 634832 NA 7 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREBRF 5 173056352 173139284 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREBZF 11 85659708 85682908 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREG1 1 167529117 167553805 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREG2 2 101345551 101387595 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRELD1 3 9933822 9945413 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRELD2 22 49918167 49927540 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 11 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CREM 10 35126791 35212958 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRH 8 66176382 66178725 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRHBP 5 76952713 76981158 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRHR1 17 45784280 45835828 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRHR2 7 30651943 30700129 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 16 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRIM1 2 36355926 36551135 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRIP1 14 105486317 105488947 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRIP2 14 105472962 105480170 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRIP3 6 43299710 43308797 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRIPT 2 46616416 46625742 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRISP1 6 49834257 49877096 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRISP2 6 49692358 49713590 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRISP3 6 49727384 49744437 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRISPLD1 8 74984515 75034558 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRISPLD2 16 84819984 84920768 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRK 17 1420689 1463162 FALSE 1135 -0.809094444314198 15 1361226 1614943 0.449390955025597 1 0 0.449390955025597 1 0 253717 1 6 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRKL 22 20917426 20953749 FALSE 1415 2.36551790807427 121 20887766 20953700 0.593481580287395 23 NA 0.593481580287395 23 NA 65934 NA 2 19 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRLF1 19 18572220 18607741 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRLF3 17 30769388 30824776 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRLS1 20 6006090 6040053 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRMP1 4 5748084 5893058 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 35 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRNKL1 20 20034368 20056046 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRNN 1 152409243 152414263 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CROCC 1 16740273 16972979 FALSE 9 -0.232434138346071 47 16409849 16760937 0.593443012170704 3 1 0.593443012170704 3 1 351088 2 4 59 14 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CROCC2 2 240906330 240993311 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 38 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CROT 7 87345681 87399795 FALSE 541 -0.332675018287135 44 86907683 87475517 0.18904974046126 3 NA 0.18904974046126 3 NA 567834 NA 5 17 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRP 1 159712289 159714589 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRTAC1 10 97865000 98030828 FALSE 737 0.82072626963711 79 97865071 98030612 0.593481580287395 7 NA 0.593481580287395 7 NA 165541 NA 2 20 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRTAM 11 122838500 122872639 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRTAP 3 33113979 33147773 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRTC1 19 18683677 18782333 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRTC2 1 153947669 153958625 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 17 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRTC3 15 90529925 90645345 FALSE 1055 -0.813734520669884 15 90388379 90642090 0.449390955025597 1 0 0.449390955025597 1 0 253711 1 2 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRX 19 47819779 47843330 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRY1 12 106991364 107093829 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRY2 11 45847118 45883248 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYAB 11 111908565 111923722 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBA1 17 29246863 29254494 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBA2 2 218990189 218993421 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBA4 22 26621964 26630672 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBB1 22 26599278 26618088 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBB2 22 25219522 25231869 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBB3 22 25199850 25207363 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBG1 6 106360808 106571978 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 31 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBG2 1 26321698 26360080 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 29 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYBG3 3 97822040 97944963 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 46 7 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYGA 2 208160740 208163576 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYGB 2 208142573 208146168 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYGC 2 208128137 208129830 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYGD 2 208121607 208124501 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYGN 7 151428835 151440813 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYGS 3 186538441 186546702 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYL1 13 20403666 20525873 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYM 16 21238874 21303083 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYZ 1 74705482 74733408 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CRYZL1 21 33589341 33643926 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CS 12 56271699 56300392 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSAD 12 53157663 53180909 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSAG1 23 152727484 152733735 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 3 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSAG2 23 152708261 152714549 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 1 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSAG3 23 152753921 152760222 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 1 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSDC2 22 41560763 41577741 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSDE1 1 114716913 114758676 FALSE 40 -0.536195164432015 31 114718137 115663936 NA 2 NA NA 2 NA 945799 NA 7 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSE1L 20 49046246 49096960 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 25 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSF1 1 109910242 109930992 FALSE 37 1.31732191562483 90 109910972 109930833 0.593481580287395 10 NA 0.593481580287395 10 NA 19861 NA 1 23 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSF1R 5 150053291 150113372 FALSE 405 0.638315012719462 75 150053295 150155740 0.593481580287395 6 NA 0.593481580287395 6 NA 102445 NA 2 30 5 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSF2 5 132073790 132076170 FALSE 394 -0.271932115962752 46 131990195 132441120 0.261157737158964 3 NA 0.261157737158964 3 NA 450925 NA 9 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSF2RB 22 36913628 36940449 FALSE 1435 1.70308001865019 103 36922283 36938467 0.593481580287395 14 NA 0.593481580287395 14 NA 16184 NA 1 18 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSF3 17 40015361 40017813 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSF3R 1 36466043 36483278 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSGALNACT1 8 19404161 19758029 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSGALNACT2 10 43138486 43185308 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSH1 17 63894909 63896661 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 5 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSH2 17 63872012 63873766 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 5 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSHL1 17 63909597 63918838 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 10 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSK 15 74782057 74803198 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSKMT 11 62665309 62668496 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSMD1 8 2935353 4994972 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 75 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSMD2 1 33513999 34165842 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 85 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSMD3 8 112222928 113437099 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 87 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSN1S1 4 69931081 69946574 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSN2 4 69955256 69961007 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSN3 4 70242588 70251428 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK1A1 5 149492197 149551552 FALSE 403 1.761291662529 105 149493053 149551193 0.593481580287395 14 NA 0.593481580287395 14 NA 58140 NA 1 29 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK1A1L 13 37103259 37105664 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK1D 17 82239023 82273731 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK1E 22 38290691 38318084 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK1G1 15 64165517 64356259 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK1G2 19 1941149 1981338 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK1G3 5 123512099 123617045 FALSE 392 -0.336901155452395 44 122775231 124648866 0.18904974046126 3 NA 0.18904974046126 3 NA 1873635 NA 7 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK2A1 20 472498 543835 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK2A2 16 58157907 58197920 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK2A3 11 11351942 11353357 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSNK2B 6 31665236 31670343 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSPG4 15 75674322 75712848 FALSE 1040 -0.419253708499368 37 75468964 75843853 NA 2 NA NA 2 NA 374889 NA 7 32 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSPG5 3 47562239 47580792 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSPP1 8 67062426 67196263 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 31 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSRNP1 3 39141855 39154562 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSRNP2 12 51061205 51083664 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSRNP3 2 165469647 165689407 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSRP1 1 201483530 201509456 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSRP2 12 76858715 76879060 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSRP3 11 19182037 19210571 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST1 20 23747553 23751268 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST11 20 23450403 23452857 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST2 20 23823769 23826731 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST3 20 23626706 23638473 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST4 20 23685640 23689040 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST5 20 23875935 23879750 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST6 11 66011841 66013505 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST7 20 24949230 24959928 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST8 20 23491101 23496018 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST9 20 23602410 23605876 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CST9L 20 23564732 23568749 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSTA 3 122325244 122341972 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSTB 21 43772511 43776445 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSTF1 20 56392371 56406369 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSTF2 23 100820359 100840932 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSTF2T 10 51695487 51699591 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSTF3 11 33077188 33162371 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 21 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CSTL1 20 23439685 23444930 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CT45A1 23 135713453 135723539 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CT47A1 23 120982476 120985788 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CT47B1 23 120872603 120875929 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CT55 23 135156536 135171398 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CT62 15 71110244 71115500 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CT83 23 116461682 116463003 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTAG2 23 154651972 154653579 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTAGE1 18 22413601 22417915 FALSE 1246 0.0116107808951413 58 22415607 22993572 0.387728048050399 4 NA 0.387728048050399 4 NA 577965 NA 2 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTAGE15 7 143571801 143574387 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 5 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTAGE4 7 144183466 144186053 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTAGE6 7 143755089 143757696 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTAGE8 7 144266701 144269288 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTAGE9 6 131708684 131711017 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTBP1 4 1211448 1249953 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTBP2 10 124984317 125161170 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTBS 1 84549606 84574480 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTC1 17 8224821 8248095 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTCF 16 67562407 67639185 TRUE 1112 1.22838724092134 87 67545972 67639163 0.593481580287395 9 NA 0.593481580287395 9 NA 93191 NA 2 23 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTCFL 20 57495966 57525652 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTDNEP1 17 7243591 7252491 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTDP1 18 79679801 79756623 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTDSP1 2 218398256 218405941 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTDSP2 12 57819927 57846739 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTDSPL 3 37861960 37984469 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTDSPL2 15 44427234 44529038 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTF1 16 30896607 30903560 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTGF 6 131948176 131951373 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTH 1 70411218 70439851 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTHRC1 8 103371515 103382997 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTIF 18 48539046 48863217 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTLA4 2 203867771 203873965 FALSE 206 1.6976149384437 102 203867792 203955997 0.593481580287395 14 NA 0.593481580287395 14 NA 88205 NA 2 11 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNNA1 5 138610967 138935034 FALSE 397 0.440919835414963 70 138568982 138951267 0.569287299993522 5 NA 0.569287299993522 5 NA 382285 NA 4 34 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNNA2 2 79185231 80648861 FALSE 152 0.711381197364187 77 79523244 80647833 0.593481580287395 6 NA 0.593481580287395 6 NA 1124589 NA 2 29 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNNA3 10 65912518 67696169 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 29 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNNAL1 9 108942569 109013529 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNNB1 3 41194741 41260096 FALSE 249 1.4383342941467 95 41194775 41240394 0.593481580287395 11 NA 0.593481580287395 11 NA 45619 NA 1 37 4 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNNBIP1 1 9848276 9910336 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNNBL1 20 37693955 37872129 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNND1 11 57753243 57819546 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNND2 5 10971840 11904043 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTNS 17 3636468 3661542 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTPS1 1 40979335 41012565 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTPS2 23 16588003 16712936 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTR9 11 10750987 10801625 TRUE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 34 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTRB1 16 75219000 75226338 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTRB2 16 75204096 75207185 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTRC 1 15438439 15449242 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTRL 16 67927640 67932414 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSA 20 45890144 45898820 FALSE 1386 0.148259010786639 63 45877825 45895143 0.54220702508464 4 NA 0.54220702508464 4 NA 17318 NA 5 18 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSB 8 11842524 11869448 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSC 11 88293592 88337787 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSD 11 1752752 1764573 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSE 1 206009264 206023909 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSF 11 66563463 66568841 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSG 14 24573522 24576260 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSH 15 78921058 78949574 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSK 1 150796208 150808323 FALSE 55 -0.603676872005541 28 150622798 150876627 NA 2 NA NA 2 NA 253829 NA 6 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSL 9 87725519 87731393 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSO 4 155924118 155953917 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSS 1 150730196 150765957 FALSE 55 -0.603676872005541 28 150622798 150876627 NA 2 NA NA 2 NA 253829 NA 6 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSV 9 97029679 97039643 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSW 11 65879809 65883741 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTSZ 20 58995185 59007247 FALSE 1396 -0.20354273420644 52 58981312 59194662 0.426118104232275 3 NA 0.426118104232275 3 NA 213350 NA 6 7 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTTN 11 70398404 70436584 FALSE 796 -0.528927183156658 34 70103077 71501385 NA 2 NA NA 2 NA 1398308 NA 7 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTTNBP2 7 117710651 117874139 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 32 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTTNBP2NL 1 112396181 112463456 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTU1 19 51097606 51108370 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTU2 16 88706463 88715386 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 16 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTXN1 19 7924485 7926166 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTXN2 15 48178122 48203756 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTXN3 5 127649044 127658630 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 2 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CTXND1 15 80195484 80252213 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUBN 10 16823966 17129817 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 69 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUEDC1 17 57861243 57955323 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 10 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUEDC2 10 102423245 102432661 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL1 7 148697914 148801036 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL2 10 35008551 35090642 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL3 2 224470150 224585397 FALSE 221 0.988042645337441 82 224379635 224585298 0.593481580287395 8 NA 0.593481580287395 8 NA 205663 NA 2 38 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL4A 13 113208193 113267108 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL4B 23 120524609 120575794 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL5 11 108008733 108107776 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL7 6 43037617 43053945 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 32 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUL9 6 43182175 43224587 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 48 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUTA 6 33416442 33418317 FALSE 459 -0.394054757052465 41 33323048 33443970 NA 2 NA NA 2 NA 120922 NA 5 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUTC 10 99702558 99756134 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUX1 7 101815904 102283958 TRUE 552 2.05795758401234 114 101816112 102283956 0.593481580287395 18 2 0.593481580287395 18 2 467844 16 1 80 16 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUX2 12 111034024 111350554 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 31 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CUZD1 10 122832149 122850793 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CWC15 11 94962622 94973612 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CWC22 2 179944876 180007113 FALSE 191 -0.789559166320211 18 178752075 181062791 0.387809979850725 1 0 0.387809979850725 1 0 2310716 1 6 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CWC25 17 38800434 38825481 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CWC27 5 64768930 65018763 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CWF19L1 10 100232298 100267680 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CWF19L2 11 107326345 107457844 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CWH43 4 48986247 49062081 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CX3CL1 16 57372458 57385048 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CX3CR1 3 39263494 39281735 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXADR 21 17512382 17593579 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL1 4 73869393 73871242 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL10 4 76021117 76023497 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL11 4 76033682 76041415 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL12 10 44370165 44386493 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL13 4 77511753 77611834 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL14 5 135570679 135579279 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL16 17 4733526 4739922 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL17 19 42428288 42443048 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL2 4 74097035 74099293 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL3 4 74036589 74038807 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL5 4 73995642 73998779 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL6 4 73836497 73849064 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL8 4 73740506 73743716 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCL9 4 76001275 76007488 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCR1 2 218162845 218166995 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCR2 2 218125289 218137253 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCR3 23 71615916 71618517 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCR4 2 136114349 136118165 FALSE 174 1.77637557402647 105 136114456 137160352 0.593481580287395 15 NA 0.593481580287395 15 NA 1045896 NA 2 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCR5 11 118883766 118897799 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXCR6 3 45940933 45948353 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXXC1 18 50282343 50288304 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXXC4 4 104468312 104494901 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXXC5 5 139647299 139683882 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf21 23 30558824 30577844 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf36 23 45148374 45200901 FALSE 1472 -0.741792499922808 18 45151710 47024874 0.387809979850725 1 0 0.387809979850725 1 0 1873164 1 7 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf38 23 40626921 40647554 FALSE 1468 -0.326446288418871 44 40143046 41232371 0.18904974046126 3 NA 0.18904974046126 3 NA 1089325 NA 6 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf40A 23 149540355 149550510 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf40B 23 149929527 149938811 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf56 23 119538149 119565408 FALSE 1506 0.819455598940904 79 119469687 119591248 0.593481580287395 7 NA 0.593481580287395 7 NA 121561 NA 4 7 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf57 23 106611930 106679442 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf58 23 23907801 23939509 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf65 23 71103889 71106788 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf66 23 139955725 139965520 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CXorf67 23 51406915 51408843 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB561 17 63432304 63446378 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB561A3 11 61348745 61362299 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB561D1 1 109494052 109502932 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB561D2 3 50350695 50358460 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5A 18 74250847 74292016 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5B 16 69424525 69466266 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5D1 17 7857746 7862282 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5D2 17 4143168 4187310 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5R1 1 202961869 202967280 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5R2 11 7665100 7677222 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 8 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5R3 22 42617840 42649568 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5R4 6 83859643 83967424 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYB5RL 1 54169651 54200036 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYBA 16 88643283 88651152 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYBB 23 37780011 37813461 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYBC1 17 82442589 82450829 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 6 3 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYBRD1 2 171522247 171558133 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYC1 8 144095027 144097525 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYCS 7 25120091 25125361 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYFIP1 15 22867052 22981063 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYFIP2 5 157266079 157395595 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 35 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYGB 17 76527356 76551175 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYHR1 8 144449582 144465677 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYLC1 23 83861126 83886699 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYLC2 9 102995311 103018488 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYLD 16 50742050 50801935 TRUE 1103 0.63672383657968 75 50742017 51142028 0.593481580287395 6 NA 0.593481580287395 6 NA 400011 NA 2 28 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP11A1 15 74337759 74367740 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP11B1 8 142872356 142879846 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP11B2 8 142910559 142917843 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 10 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP17A1 10 102830531 102837533 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP19A1 15 51208057 51338610 FALSE 1029 2.47823443625181 123 51208297 51341670 0.593481580287395 24 NA 0.593481580287395 24 NA 133373 NA 2 28 9 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP1A1 15 74719542 74725610 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP1A2 15 74748844 74756202 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP1B1 2 38066973 38109902 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 9 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP20A1 2 203238940 203305611 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP21A2 6 32038265 32041670 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP24A1 20 54153449 54173973 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP26A1 10 93073475 93077890 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP26B1 2 72129238 72148038 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP26C1 10 93060808 93069536 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP27A1 2 218781749 218815293 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP27B1 12 57762334 57768986 FALSE 893 0.77963013665916 78 57748272 57766231 0.593481580287395 7 NA 0.593481580287395 7 NA 17959 NA 4 11 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP27C1 2 127184120 127220078 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2A13 19 41088472 41096195 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2A6 19 40843538 40850447 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2A7 19 40875439 40882752 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2B6 19 40991250 41018398 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2C18 10 94683621 94736190 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2C19 10 94762681 94853205 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2C8 10 95036772 95069497 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2C9 10 94938658 94989391 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2D6 22 42126499 42130906 FALSE 1445 -0.00462438440054337 56 42090800 42411747 0.593443012170704 3 NA 0.593443012170704 3 NA 320947 NA 4 10 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2E1 10 133520406 133561220 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 21 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2F1 19 41114432 41128366 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2J2 1 59893308 59926790 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2R1 11 14877440 14892252 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2S1 19 41193049 41207539 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 11 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2U1 4 107931369 107953457 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP2W1 7 983199 989640 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP39A1 6 46549580 46652830 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP3A4 7 99756960 99784265 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP3A43 7 99828013 99866102 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP3A5 7 99648194 99680026 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP3A7 7 99684957 99735196 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP3A7-CYP3A51P 7 99685226 99735093 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP46A1 14 99684304 99727301 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4A11 1 46929177 46941484 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4A22 1 47137435 47149741 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 12 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4B1 1 46757838 46819413 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4F11 19 15912367 15934867 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4F12 19 15672757 15697174 FALSE 1312 -0.0762223533681475 54 15643932 15807992 0.569455701337318 3 NA 0.569455701337318 3 NA 164060 NA 6 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4F2 19 15878023 15898120 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4F22 19 15508493 15552317 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4F3 19 15640897 15662825 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 15 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4F8 19 15615218 15630638 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 13 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4V2 4 186191520 186213456 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 11 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4X1 1 47023568 47050751 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP4Z1 1 47067488 47118319 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP51A1 7 92112151 92134803 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP7A1 8 58490178 58500236 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP7B1 8 64587763 64798761 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYP8B1 3 42856005 42876165 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYR61 1 85580761 85583962 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYREN 7 135092363 135170795 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYS1 2 10056780 10080944 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYSLTR1 23 78271464 78327691 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYSLTR2 13 48653711 48711226 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYSRT1 9 137224635 137226311 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYSTM1 5 140174642 140282052 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYTH1 17 78674048 78782297 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYTH2 19 48469032 48482314 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYTH3 7 6161776 6272644 FALSE 520 -0.273341933736742 46 6006303 6387310 0.261157737158964 3 NA 0.261157737158964 3 NA 381007 NA 8 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYTH4 22 37282027 37315345 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYTIP 2 157414619 157488961 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYTL1 4 5014586 5019472 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 CYYR1 21 26466209 26573284 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 5 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 D2HGDH 2 241734579 241768816 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAAM1 14 59188646 59371405 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAAM2 6 39792298 39904877 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAB1 1 56994778 58546734 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 25 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAB2 5 39371675 39462300 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAB2IP 9 121567057 121785530 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DACH1 13 71437966 71867192 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DACH2 23 86148458 86832604 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DACT1 14 58633967 58648321 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DACT2 6 168292830 168319754 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 13 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DACT3 19 46647612 46661138 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAD1 14 22564905 22589269 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAG1 3 49468703 49535618 FALSE 254 -0.617285049863544 28 49413119 49681966 NA 2 NA NA 2 NA 268847 NA 7 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAGLA 11 61680433 61747001 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAGLB 7 6409126 6484190 FALSE 521 1.80901821029673 107 6391896 6410155 0.593481580287395 15 NA 0.593481580287395 15 NA 18259 NA 2 23 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DALRD3 3 49015488 49022293 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAND5 19 12965159 12974762 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAO 12 108858932 108901043 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAOA 13 105465867 105491034 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAP 5 10679230 10761272 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAP3 1 155687960 155739010 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAPK1 9 87497228 87708633 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAPK2 15 63907036 64072033 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAPK3 19 3958453 3971123 FALSE 1278 -0.169406920300239 52 3959118 4043288 0.426118104232275 3 NA 0.426118104232275 3 NA 84170 NA 3 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAPL1 2 158795317 158862781 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAPP1 4 99816833 99870154 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DARS 2 135906677 135986100 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DARS2 1 173824568 173858808 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAW1 2 227871054 227924344 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAXX 6 33318558 33323016 TRUE 458 1.64454209701499 100 33313684 33321863 0.593481580287395 13 NA 0.593481580287395 13 NA 8179 NA 4 12 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAZAP1 19 1407569 1435687 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAZAP2 12 51238292 51271362 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DAZL 3 16586792 16670306 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBF4 7 87876216 87909541 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 15 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBF4B 17 44708608 44752264 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBH 9 133635348 133659344 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBI 2 119366921 119372560 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBN1 5 177456608 177474401 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBNDD1 16 90004865 90020128 FALSE 1132 -0.862602881667713 15 89949513 90075819 0.449390955025597 1 0 0.449390955025597 1 0 126306 1 5 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBNDD2 20 45406057 45410610 FALSE 1384 -0.229789907358964 49 45348311 45425772 0.331933131290263 3 NA 0.331933131290263 3 NA 77461 NA 6 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBNL 7 44044640 44069456 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBP 19 48630030 48637438 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBR1 3 138161012 138174949 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBT 1 100186919 100249834 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBX1 11 20156155 20160613 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DBX2 12 45014672 45051099 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF1 3 51395867 51500002 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF10 9 37800502 37867666 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF11 14 24114195 24125242 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF12 9 34086387 34127399 FALSE 662 -0.688244417473182 25 33568791 34220857 0.276933305076759 1 0 0.276933305076759 1 0 652066 1 6 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF12L1 23 126549383 126552851 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF12L2 23 126163499 126166097 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF13 8 103414714 103443453 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF15 19 13952492 13961449 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF16 4 17800655 17810758 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF17 2 171434217 171485052 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF4 14 72926332 72959703 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF4L1 4 41981696 41986467 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF4L2 8 87870743 87874068 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF5 14 69050881 69153150 FALSE 983 -0.0712098363094063 54 68878530 69054483 0.569455701337318 3 NA 0.569455701337318 3 NA 175953 NA 2 17 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF6 1 167935783 168075843 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF7 17 63550461 63594266 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF8 1 160215715 160262531 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF8L1 23 27977993 27981449 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAF8L2 23 27590382 27748821 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCAKD 17 45023340 45061109 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCANP1 5 135444214 135447348 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCBLD1 6 117453817 117569858 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCBLD2 3 98795941 98901689 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCC 18 52340172 53535903 FALSE 1258 0.452268897061588 70 50986670 52752180 0.569287299993522 5 NA 0.569287299993522 5 NA 1765510 NA 5 31 2 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCD 12 54644591 54648493 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCDC1 11 30830369 31369810 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 37 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCDC2 6 24171756 24358052 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCDC2B 1 32209094 32216196 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCDC2C 2 3703592 3847411 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCHS1 11 6621323 6655854 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 47 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCHS2 4 154231742 154495570 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 58 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCK 4 70992538 71030914 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCLK1 13 35768652 36131306 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 21 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCLK2 4 150078274 150257457 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCLK3 3 36712422 36764349 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCLRE1A 10 113834725 113854383 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCLRE1B 1 113905141 113914086 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCLRE1C 10 14897359 14954432 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCN 12 91140484 91183123 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCP1A 3 53283428 53347610 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCP1B 12 1946054 2004535 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCP2 5 112976702 113020970 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCPS 11 126303752 126345754 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCST1 1 155033824 155050930 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 17 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCST2 1 155018520 155033781 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 18 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCSTAMP 8 104339087 104356689 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCT 13 94436808 94479682 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTD 4 182890060 182917936 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTN1 2 74361154 74392087 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 33 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTN2 12 57530102 57547331 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTN3 9 34613545 34620523 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTN4 5 150708440 150759109 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTN5 16 23641392 23677455 FALSE 1091 0.962347681164329 82 23603362 23641560 0.593481580287395 8 NA 0.593481580287395 8 NA 38198 NA 2 7 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTN6 8 30156297 30183640 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCTPP1 16 30423619 30430075 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCUN1D1 3 182938074 182985953 FALSE 300 2.67003865619845 126 182938070 182944937 0.593481580287395 28 NA 0.593481580287395 28 NA 6867 NA 1 35 4 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCUN1D2 13 113455819 113490952 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCUN1D3 16 20854925 20900384 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCUN1D4 4 51843000 51916837 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 12 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCUN1D5 11 103062076 103092215 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCX 23 111293779 111412429 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DCXR 17 82035136 82037732 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDA1 19 17309518 17323301 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDAH1 1 85318481 85578363 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDAH2 6 31727038 31730617 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDB1 11 61299451 61342596 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 35 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDB2 11 47214465 47239240 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDC 7 50458436 50565457 FALSE 533 -0.636373738560084 28 50463408 55129820 NA 2 NA NA 2 NA 4666412 NA 8 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDHD1 14 53036745 53153282 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDHD2 8 38225218 38275558 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 45 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDI1 11 104036580 104039188 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDI2 1 15617500 15669044 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDIAS 11 82899975 82958277 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDIT3 12 57516588 57521737 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDIT4 10 72273920 72276036 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDIT4L 4 100185870 100190782 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDN 12 48995149 48999309 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDO 6 110391771 110415562 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDOST 1 20651767 20661544 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDR1 6 30876421 30900156 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 20 7 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDR2 1 162631373 162787400 FALSE 68 0.975913824038759 82 162626468 162787290 0.593481580287395 8 NA 0.593481580287395 8 NA 160822 NA 1 60 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDRGK1 20 3190350 3204685 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDT 22 23971365 23979828 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDTL 22 23966901 23972532 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX1 2 15591178 15631111 FALSE 111 1.38092266252683 93 12723544 15627171 0.593481580287395 11 NA 0.593481580287395 11 NA 2903627 NA 4 25 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX10 11 108665025 108940930 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX11 12 31073845 31104791 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 27 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX17 22 38483440 38507660 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX18 2 117814650 117832379 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX19A 16 70346829 70373383 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX19B 16 70289663 70335283 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX20 1 111755245 111768016 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX21 10 68956128 68985073 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX23 12 48829764 48852842 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX24 14 94048291 94081245 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX25 11 125903348 125943702 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX27 20 49219295 49244077 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX28 16 68021274 68023442 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX31 9 132592997 132670401 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX39A 19 14408819 14419383 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX39B 6 31530219 31542448 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 11 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX3X 23 41333284 41364472 TRUE 1469 2.05972948116275 115 41333988 41350202 0.593481580287395 18 NA 0.593481580287395 18 NA 16214 NA 1 38 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX4 5 55738017 55817157 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX41 5 177511577 177517469 FALSE 420 1.17248848425709 85 177511761 177516989 0.593481580287395 9 NA 0.593481580287395 9 NA 5228 NA 1 18 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX42 17 63773603 63819317 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 20 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX43 6 73394748 73417569 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX46 5 134758771 134855133 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX47 12 12813316 12829981 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX49 19 18919675 18928633 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX5 17 64499616 64508199 FALSE 1215 -0.310157730541577 44 64323838 64858765 0.18904974046126 3 NA 0.18904974046126 3 NA 534927 NA 7 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX50 10 68901278 68946847 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX51 12 132136594 132144335 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 16 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX52 17 37609739 37643464 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX53 23 22999961 23003589 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX54 12 113157174 113185479 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX55 12 123602077 123620941 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 15 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX56 7 44565417 44575051 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX58 9 32455705 32526324 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 20 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX59 1 200623896 200669969 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX6 11 118747766 118791149 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX60 4 168216293 168318807 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 39 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DDX60L 4 168356735 168537786 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 44 9 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEAF1 11 644233 706715 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 20 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEC1 9 114850968 115402644 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 53 9 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DECR1 8 90001405 90052092 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 13 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DECR2 16 401826 412487 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEDD 1 161120974 161132688 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEDD2 19 42198598 42220140 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEF6 6 35297852 35321771 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEF8 16 89947925 89968060 FALSE 1132 -0.862602881667713 15 89949513 90075819 0.449390955025597 1 0 0.449390955025597 1 0 126306 1 5 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFA3 8 7015869 7018301 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFA4 8 6935822 6938338 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFA5 8 7055304 7056734 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFA6 8 6924693 6926076 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB1 8 6870575 6878022 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB104A 8 7836471 7841242 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB105A 8 7821966 7823889 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB106A 8 7825172 7829053 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 1 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB106B 8 7482504 7486400 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB107A 8 7811720 7815716 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 1 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB108B 11 71833200 71837710 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB110 6 50009138 50021981 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB112 6 50043575 50048651 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB113 6 49968677 49969625 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB114 6 49960249 49964105 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 1 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB115 20 31257664 31259632 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB116 20 31303212 31308585 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 2 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB118 20 31368618 31373923 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB119 20 31377164 31390603 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB121 20 31404845 31412838 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB123 20 31440519 31450257 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB124 20 31465506 31476757 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB125 20 87250 97094 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB126 20 142369 145751 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB127 20 157470 159163 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB128 20 187853 189681 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB129 20 227258 229886 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB131A 4 9444534 9450514 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB131B 11 71878453 71884561 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB132 20 257736 261096 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB133 6 49946021 49950265 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB134 8 11993174 11996312 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB135 8 11982321 11984590 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB136 8 11973937 11974599 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB4A 8 7894629 7896711 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEFB4B 8 7414860 7416863 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEGS1 1 224175756 224193441 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEGS2 14 100143957 100160163 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEK 6 18223868 18264823 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DELE1 5 141923808 141942047 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND1A 9 123379654 123930152 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 31 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND1B 1 197504748 197775696 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND1C 19 6467207 6482557 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND2A 7 140518420 140673993 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 24 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND2C 1 114582848 114670422 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND2D 1 111187174 111204535 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND3 8 141117278 141195808 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 28 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND4A 15 65658046 65792293 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 39 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND4B 1 153929501 153946696 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 33 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND4C 9 19230435 19373545 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 38 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND5A 11 9138825 9265390 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND5B 12 31382223 31591097 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 27 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND6A 3 57625457 57693089 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENND6B 22 50309030 50327060 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 17 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DENR 12 122752774 122771064 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEPDC1 1 68474152 68497221 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEPDC1B 5 60596912 60700190 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEPDC4 12 100203669 100267079 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEPDC5 22 31753867 31908033 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 45 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEPDC7 11 33015864 33033582 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 11 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEPP1 10 44970981 44978810 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEPTOR 8 119873717 120050913 FALSE 635 -0.240283647650564 49 119593820 120497470 0.331933131290263 3 NA 0.331933131290263 3 NA 903650 NA 7 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DERA 12 15911172 16037282 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DERL1 8 123013164 123042423 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DERL2 17 5471251 5486811 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DERL3 22 23834503 23839128 FALSE 1425 0.860938718657874 80 23780476 23837972 0.593481580287395 7 NA 0.593481580287395 7 NA 57496 NA 3 17 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DES 2 219418377 219426739 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DESI1 22 41598028 41621096 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DESI2 1 244652935 244709033 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DET1 15 88494440 88546675 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEUP1 11 93329971 93438487 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DEXI 16 10928891 10942460 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DFFA 1 10456522 10472526 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DFFB 1 3857267 3885429 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGAT1 8 144314584 144326910 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGAT2 11 75759512 75801535 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 9 0 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGAT2L6 23 70177483 70205545 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGCR2 22 19036282 19122454 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGCR6 22 18906028 18914238 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGCR6L 22 20314276 20320080 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGCR8 22 20080232 20111877 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKA 12 55927319 55954027 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKB 7 14145049 14974777 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKD 2 233354507 233472104 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKE 17 56834099 56869567 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKG 3 186105668 186362237 FALSE 309 1.66772126965792 102 186046310 186108950 0.593481580287395 13 NA 0.593481580287395 13 NA 62640 NA 2 27 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKH 13 42040036 42256578 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 32 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKI 7 137381037 137847092 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 36 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKK 23 50365409 50470738 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 31 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKQ 4 958887 986895 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGKZ 11 46332905 46380554 FALSE 775 -0.488983327470503 37 45935757 46543340 NA 2 NA NA 2 NA 607583 NA 6 36 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGLUCY 14 91060333 91225632 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DGUOK 2 73926826 73958961 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHCR24 1 54849627 54887271 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHCR7 11 71428193 71452868 FALSE 796 -0.528927183156658 34 70103077 71501385 NA 2 NA NA 2 NA 1398308 NA 7 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHDDS 1 26432282 26471294 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHDH 19 48933682 48944969 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHFR 5 80626228 80654983 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 10 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHFR2 3 94047836 94063389 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 7 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHH 12 49086656 49094819 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHODH 16 72008588 72027664 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHPS 19 12675717 12681902 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS1 14 24290598 24299833 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS11 17 36591798 36600806 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS12 13 51767993 51804157 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS13 17 28897781 28903071 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS2 14 23630115 23645639 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS3 1 12567910 12617731 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS4 14 23953586 23969279 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS4L2 14 23969874 24006408 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS7 14 60144120 60169856 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS7B 17 21123364 21193265 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS7C 17 9771434 9791297 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHRS9 2 169064789 169096167 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHTKD1 10 12068972 12123225 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 20 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX15 4 24517441 24584550 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX16 6 30653119 30673037 FALSE 442 -0.707992332207312 21 30547554 30653233 0.328777186374237 1 0 0.328777186374237 1 0 105679 1 8 22 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX29 5 55256245 55307722 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX30 3 47802909 47850195 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX32 10 125836337 125896436 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX33 17 5440912 5469060 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX34 19 47349281 47382704 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX35 20 38962299 39039723 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX36 3 154272546 154324497 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX37 12 124946825 124989122 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 29 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX38 16 72093562 72112912 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX40 17 59565525 59608345 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 17 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX57 2 38797729 38875934 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 27 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX58 17 42101404 42112733 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX8 17 43483865 43610338 FALSE 1191 -0.515679675839481 34 43146165 43526482 NA 2 NA NA 2 NA 380317 NA 6 81 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DHX9 1 182839369 182887751 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIABLO 12 122207662 122227534 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIAPH1 5 141515016 141619055 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 31 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIAPH2 23 96684663 97604997 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 34 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIAPH3 13 59665583 60163987 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 31 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DICER1 14 95086228 95158010 TRUE 990 1.55314197751022 98 95086478 95157534 0.593481580287395 12 NA 0.593481580287395 12 NA 71056 NA 1 72 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIDO1 20 62877738 62937952 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 33 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIMT1 5 62387254 62403939 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIO1 1 53891239 53911086 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIO2 14 80197527 80387757 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIO3 14 101561351 101563452 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIP2A 21 46458899 46569852 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 40 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIP2B 12 50504985 50748667 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 43 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIP2C 10 274190 689668 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 47 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIRAS1 19 2714567 2721418 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIRAS2 9 90609832 90643105 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIRAS3 1 68045896 68051631 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIRC1 2 188733738 188790104 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIRC2 3 122794795 122881139 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIS3 13 72752169 72782096 TRUE 948 1.62404837704279 100 72752382 72782119 0.593481580287395 13 NA 0.593481580287395 13 NA 29737 NA 3 47 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIS3L 15 66293217 66333898 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 21 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIS3L2 2 231961245 232344350 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 21 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DISC1 1 231626815 232041272 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DISP1 1 222872271 223005995 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DISP2 15 40358235 40378639 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DISP3 1 11479166 11537584 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 28 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DIXDC1 11 111927144 112022584 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 22 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DKC1 23 154762742 154777689 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DKK1 10 52314296 52318042 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DKK2 4 106921802 107283806 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DKK3 11 11963106 12009769 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DKK4 8 42374068 42377232 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DKKL1 19 49361783 49375116 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLAT 11 112024814 112064390 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 16 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLC1 8 13083361 13604610 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 34 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLD 7 107890970 107931730 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 20 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLEC1 3 38039205 38124025 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 42 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLEU7 13 50711008 50843939 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLG1 3 197042560 197299300 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 28 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLG2 11 83455012 85627922 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 33 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLG3 23 70444861 70505490 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 24 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLG4 17 7187169 7219841 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLG5 10 77790791 77926526 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 39 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLGAP1 18 3496032 4455335 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLGAP2 8 737596 1708474 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 22 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLGAP3 1 34865436 34929585 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLGAP4 20 36306336 36528637 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLGAP5 14 55148112 55191678 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLK1 14 100725705 100738224 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLK2 6 43450352 43456632 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLL1 6 170282206 170306565 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLL3 19 39498895 39508481 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLL4 15 40929333 40939073 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLST 14 74881891 74903745 FALSE 985 -0.352585010986809 44 74858407 75009033 0.18904974046126 3 NA 0.18904974046126 3 NA 150626 NA 6 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLX1 2 172084740 172089677 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLX2 2 172099439 172102900 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLX3 17 49990005 49995224 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLX4 17 49968970 49974959 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLX5 7 97020392 97024950 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DLX6 7 97005548 97011039 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMAC1 9 7796490 7888380 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMAC2 19 41431318 41440717 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMAP1 1 44213455 44220681 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMBT1 10 122560665 122643736 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 54 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMBX1 1 46506996 46514226 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMC1 22 38518949 38570286 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMD 23 31097677 33339441 FALSE 1462 -0.830640201023493 15 30653581 33339288 0.449390955025597 1 0 0.449390955025597 1 0 2685707 1 4 93 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMGDH 5 78997606 79236038 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMKN 19 35497220 35513658 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMP1 4 87650307 87664361 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMPK 19 45769717 45782552 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRT1 9 841690 969090 FALSE 642 -0.969744142087345 10 177800 2007272 0.593443012170704 1 0 0.593443012170704 1 0 1829472 1 8 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRT2 9 1049858 1057552 FALSE 642 -0.969744142087345 10 177800 2007272 0.593443012170704 1 0 0.593443012170704 1 0 1829472 1 8 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRT3 9 976964 991731 FALSE 642 -0.969744142087345 10 177800 2007272 0.593443012170704 1 0 0.593443012170704 1 0 1829472 1 8 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRTA1 9 22446841 22455740 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRTA2 1 50417550 50423500 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRTB1 1 53459399 53467488 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRTC1 23 72872025 72943814 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRTC1B 23 72777009 72848802 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMRTC2 19 41844743 41852333 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMTF1 7 87152361 87196337 FALSE 541 -0.332675018287135 44 86907683 87475517 0.18904974046126 3 NA 0.18904974046126 3 NA 567834 NA 5 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMTN 8 22048995 22082527 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMWD 19 45782947 45792802 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMXL1 5 119037772 119249138 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 66 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DMXL2 15 51447711 51622833 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 58 9 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNA2 10 68414064 68472121 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAAF1 16 84145287 84178767 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAAF2 14 49625174 49635230 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAAF3 19 55158661 55166722 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAAF4 15 55410525 55508234 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAAF5 7 726701 786475 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH1 3 52316319 52400491 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 89 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH10 12 123762188 123936206 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 86 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH11 7 21543215 21901839 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 99 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH12 3 57293699 57544344 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 63 9 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH14 1 224896262 225399292 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 97 12 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH17 17 78423697 78577394 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 91 11 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH2 17 7717354 7833744 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 93 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH3 16 20933111 21159441 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 77 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH5 5 13690331 13944543 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 90 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH6 2 84516455 84819589 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 83 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH7 2 195737703 196068812 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 79 9 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH8 6 38715341 39030529 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 104 10 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAH9 17 11598431 11969748 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 88 9 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAI1 9 34457414 34520989 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAI2 17 74274247 74314884 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 13 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJA1 9 33025211 33039907 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJA2 16 46955362 46973788 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJA3 16 4425805 4456775 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJA4 15 78264086 78282196 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB1 19 14514770 14529770 FALSE 1306 2.14347732187516 118 14514725 14560180 0.593481580287395 19 NA 0.593481580287395 19 NA 45455 NA 2 19 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB11 3 186567403 186585800 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB12 10 72332830 72355230 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB13 11 73950319 73970366 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 8 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB14 4 99896248 99946726 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB2 2 219279267 219286900 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB4 1 77979175 78017964 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB5 9 34989641 34998900 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB6 7 157335381 157417439 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB7 22 40859549 40862126 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB8 3 128462439 128467248 FALSE 282 1.46327503192174 95 128462806 128493188 0.593481580287395 11 NA 0.593481580287395 11 NA 30382 NA 2 3 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJB9 7 108569568 108574850 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC1 10 21756537 22003769 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC10 2 182716041 182794464 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC11 1 6634168 6701924 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC12 10 67796665 67838166 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC13 3 132417526 132539032 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 56 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC14 12 55820960 55830824 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC15 13 43023203 43114224 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC16 1 15526813 15592379 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC17 15 40765155 40807478 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC18 5 139408588 139444491 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC19 3 180983709 180989774 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC2 7 103312474 103344873 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC21 5 34929559 34958964 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC22 12 49346917 49357546 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC24 11 31369840 31431849 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC25 9 111631352 111654351 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC25-GNG10 9 111631386 111670229 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC27 2 24943636 24972094 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC28 21 33485530 33491720 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC3 13 95677139 95794989 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC30 7 73680969 73683453 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC4 11 64230278 64234286 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC5 20 63895182 63936031 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC5B 8 66021560 66100526 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC5G 2 27275421 27281499 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC6 1 65248219 65415869 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC7 17 41976433 42021376 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC8 1 28199456 28233025 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAJC9 10 73183362 73248862 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAL1 14 73644875 73703732 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNAL4 22 38778508 38794198 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNALI1 1 37556919 37566857 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNASE1 16 3611728 3680143 FALSE 1079 -0.983453391074745 11 3616630 3725168 0.593443012170704 1 0 0.593443012170704 1 0 108538 1 3 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNASE1L1 23 154401238 154412112 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNASE1L2 16 2235816 2238711 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNASE1L3 3 58192257 58214697 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNASE2 19 12875211 12881468 FALSE 1303 -0.374175356398884 41 12847883 12933687 NA 2 NA NA 2 NA 85804 NA 7 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNASE2B 1 84398532 84415018 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DND1 5 140670794 140673586 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNER 2 229357629 229714558 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNHD1 11 6497260 6593758 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 71 14 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNLZ 9 136359480 136363789 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNM1 9 128191655 128255248 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNM1L 12 32679200 32745650 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNM2 19 10718079 10833488 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 27 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNM3 1 171841498 172418466 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNMBP 10 99875577 100009919 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 32 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNMT1 19 10133345 10231286 FALSE 1294 0.822327389053294 79 10133456 10194820 0.593481580287395 7 NA 0.593481580287395 7 NA 61364 NA 1 60 6 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNMT3A 2 25227855 25342590 TRUE 116 1.23195462166871 87 25222957 25314191 0.593481580287395 10 NA 0.593481580287395 10 NA 91234 NA 1 61 4 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNMT3B 20 32762385 32809356 TRUE 1373 0.921004845427493 81 32358286 32833703 0.593481580287395 7 NA 0.593481580287395 7 NA 475417 NA 7 34 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNMT3L 21 44246339 44262216 FALSE 1411 -0.796790869313366 18 44231407 44533921 0.387809979850725 1 0 0.387809979850725 1 0 302514 1 8 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNPEP 2 219373527 219400022 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNPH1 6 43225629 43229484 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNTT 10 96304396 96338564 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNTTIP1 20 45791937 45811427 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DNTTIP2 1 93866283 93879918 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOC2A 16 30005509 30023270 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOC2B 17 142789 181636 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK1 10 126905409 127452517 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 59 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK10 2 224765090 225042445 FALSE 222 -0.757316038902357 18 224765833 225651508 0.387809979850725 1 0 0.387809979850725 1 0 885675 1 2 56 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK11 23 118495898 118686163 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 55 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK2 5 169637247 170083382 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 59 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK3 3 50675241 51384198 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 53 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK4 7 111726110 112206411 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 55 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK5 8 25184723 25418082 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 52 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK6 19 11199295 11262481 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 56 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK7 1 62454298 62688368 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 60 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK8 9 214854 465259 FALSE 642 -0.969744142087345 10 177800 2007272 0.593443012170704 1 0 0.593443012170704 1 0 1829472 1 8 50 10 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOCK9 13 98793429 99086625 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 58 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOHH 19 3490822 3500940 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOK1 2 74549026 74557554 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOK2 8 21908873 21913860 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOK3 5 177501907 177511274 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOK4 16 57471922 57487327 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOK5 20 54475597 54651171 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOK6 18 69401055 69849087 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOK7 4 3463311 3501473 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 13 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOLK 9 128945530 128947619 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOLPP1 9 129081100 129090438 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DONSON 21 33559542 33588708 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOP1A 6 83067666 83171350 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 53 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOP1B 21 36156782 36294274 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 46 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DOT1L 19 2164149 2232578 FALSE 1274 1.8985523973973 111 2164181 2232456 0.593481580287395 16 NA 0.593481580287395 16 NA 68275 NA 3 51 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPAGT1 11 119096503 119108331 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPCD 10 101570560 101609668 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPEP1 16 89613308 89638456 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPEP2 16 67987394 68000586 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPEP2NB 16 68013436 68015911 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPEP3 16 67975663 67980829 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPF1 19 38211006 38229714 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPF2 11 65333754 65353249 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPF3 14 72619296 72894116 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPH1 17 2030110 2043430 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 17 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPH2 1 43970000 43973369 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPH3 3 16257978 16264972 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPH5 1 100989623 101026088 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPH6 15 35217345 35546193 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPH7 9 137554904 137578935 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPM1 20 50934867 50958555 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPM2 9 127935099 127938484 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPM3 1 155139891 155140595 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPP10 2 114442299 115845752 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 32 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPP3 11 66480013 66509657 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 18 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPP4 2 161992241 162074542 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPP6 7 153887097 154894285 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPP7 9 137110542 137115177 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPP8 15 65442463 65517704 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPP9 19 4675224 4724673 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPPA2 3 109293788 109316517 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPPA3 12 7711454 7717559 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPPA4 3 109326141 109337572 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPPA5 6 73353062 73354295 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPRX 19 53632056 53637009 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPT 1 168695459 168729264 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPY19L1 7 34928876 35038271 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPY19L2 12 63558913 63668939 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 23 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPY19L3 19 32405543 32485895 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 18 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPY19L4 8 94719703 94793836 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 19 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPY30 2 31867809 32039812 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPYD 1 97077743 97995000 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPYS 8 104330324 104467053 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 18 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPYSL2 8 26514022 26658178 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPYSL3 5 147390811 147510056 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPYSL4 10 132186900 132205776 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DPYSL5 2 26847747 26950351 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 13 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DQX1 2 74518131 74526336 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DR1 1 93345888 93369498 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRAM1 12 101877351 102012130 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRAM2 1 111117333 111140216 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRAP1 11 65919257 65921561 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRAXIN 1 11691729 11725857 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 8 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRC1 2 26401916 26456711 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRC3 17 17972813 18016889 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRC7 16 57694793 57731805 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRD1 5 175440039 175444208 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRD2 11 113409615 113475691 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRD3 3 114128652 114199407 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRD4 11 637293 640706 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRD5 4 9781680 9784009 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRG1 22 31399523 31530634 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 31 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRG2 17 18087886 18107971 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRGX 10 49364181 49396016 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRICH1 22 23608452 23632321 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DROSHA 5 31400497 31532196 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DRP2 23 101219769 101264497 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSC1 18 31129236 31162856 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSC2 18 31058840 31102522 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSC3 18 30990008 31042815 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSCAM 21 40010999 40847139 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 44 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSCAML1 11 117427773 117817525 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 45 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSCC1 8 119833976 119856010 FALSE 635 -0.240283647650564 49 119593820 120497470 0.331933131290263 3 NA 0.331933131290263 3 NA 903650 NA 7 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSE 6 116254173 116444860 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSEL 18 67506582 67516980 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSG1 18 31318089 31357029 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSG2 18 31498043 31549008 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSG3 18 31447795 31478702 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSG4 18 31376777 31414912 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSN1 20 36751791 36773818 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSP 6 7541575 7586717 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 44 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSPP 4 87608553 87616910 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DST 6 56457987 56954628 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 136 7 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSTN 20 17569863 17609919 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DSTYK 1 205142505 205211566 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTD1 20 18587893 18766644 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTD2 14 31446036 31457510 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTHD1 4 36281622 36345756 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 15 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTL 1 212035553 212107400 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTNA 18 34493290 34891844 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 26 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTNB 2 25377198 25673647 FALSE 117 -0.811845180704833 15 25329860 25652681 0.449390955025597 1 0 0.449390955025597 1 0 322821 1 2 26 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTNBP1 6 15522801 15663058 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTWD1 15 49620980 49656232 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTWD2 5 118837322 118988545 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTX1 12 113056709 113098028 TRUE 917 2.33414323561841 121 113056806 113098029 0.593481580287395 22 NA 0.593481580287395 22 NA 41223 NA 1 20 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTX2 7 76461676 76505995 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTX3 12 57604622 57609804 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTX3L 3 122564238 122575203 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTX4 11 59171430 59208587 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DTYMK 2 241675742 241686991 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUOX1 15 45129933 45165576 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 37 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUOX2 15 45092650 45114344 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 35 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUOXA1 15 45117367 45129938 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUOXA2 15 45114321 45118421 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUPD1 10 75037836 75058514 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUS1L 17 82057506 82065887 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUS2 16 67987746 68079320 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 35 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUS3L 19 5784832 5791238 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUS4L 7 107563484 107578464 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP1 5 172768090 172771195 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP10 1 221701424 221742176 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP11 2 73762184 73780157 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP12 1 161749758 161757238 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP13 10 75094432 75109221 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 10 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP14 17 37489831 37513501 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP15 20 31847637 31870747 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP16 12 12474210 12562383 FALSE 852 -0.515807943708335 34 12079259 12714091 NA 2 NA NA 2 NA 634832 NA 7 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP18 22 30652051 30667890 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP19 2 183078559 183100005 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP2 2 96143166 96145440 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP21 23 44844004 44844888 FALSE 1471 0.975332030495321 82 44844205 45112572 0.593481580287395 8 NA 0.593481580287395 8 NA 268367 NA 2 3 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP22 6 291630 351355 TRUE 424 1.40430880038518 93 292534 411197 0.593481580287395 11 NA 0.593481580287395 11 NA 118663 NA 2 8 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP23 1 159780932 159782543 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP26 8 33591332 33600106 FALSE 600 -1.17029510777563 6 33372626 36935533 0.593443012170704 1 0 0.593443012170704 1 0 3562907 1 7 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP27 1 167094045 167129165 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP28 2 240560054 240564014 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP3 17 43766121 43778988 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP4 8 29333064 29350668 TRUE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP5 10 110497838 110511544 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP6 12 89347232 89353271 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP7 3 52048919 52056550 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP8 11 1554044 1571920 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUSP9 23 153642492 153651326 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUT 15 48331011 48343373 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUXA 19 57154021 57167443 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DUXB 16 75693929 75701459 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DVL1 1 1335276 1349350 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DVL2 17 7225341 7234545 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DVL3 3 184155311 184173614 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DWORF 3 155290229 155293775 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DXO 6 31969810 31972292 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYDC1 10 80336105 80356755 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYDC2 10 80344745 80368073 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYM 18 49041474 49461347 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNAP 18 54587757 54599493 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNC1H1 14 101964510 102056443 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 88 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNC1I1 7 95772506 96110322 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 16 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNC1I2 2 171687409 171748420 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNC1LI1 3 32525971 32570874 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNC1LI2 16 66720893 66751798 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNC2H1 11 103109410 103479863 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 96 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNC2LI1 2 43774039 43810010 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 14 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNLL1 12 120469850 120498493 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNLL2 17 58083415 58095536 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNLRB1 20 34516409 34540958 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNLRB2 16 80540734 80550760 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNLT1 6 158636474 158644739 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYNLT3 23 37836757 37847637 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYRK1A 21 37365573 37526358 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYRK1B 19 39825350 39834201 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYRK2 12 67648338 67665406 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYRK3 1 206635536 206684419 FALSE 89 -0.761407466237176 18 206507816 206636903 0.387809979850725 1 0 0.387809979850725 1 0 129087 1 3 10 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYRK4 12 4562204 4615302 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYSF 2 71453722 71686768 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 59 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DYTN 2 206651621 206718396 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DZANK1 20 18383367 18467281 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DZIP1 13 95578202 95644703 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DZIP1L 3 138061990 138115818 FALSE 288 -0.196524450016373 52 136336203 138077598 0.426118104232275 3 NA 0.426118104232275 3 NA 1741395 NA 8 17 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 DZIP3 3 108589682 108694846 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F1 20 33675683 33686404 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F2 1 23506430 23531220 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F3 6 20401906 20493715 FALSE 428 1.98108472100318 113 20401868 20493710 0.593481580287395 17 NA 0.593481580287395 17 NA 91842 NA 1 23 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F4 16 67192169 67198918 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F5 8 85177225 85217158 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F6 2 11444375 11466177 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F7 12 77021247 77065580 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E2F8 11 19224063 19241620 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 E4F1 16 2223566 2235742 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EAF1 3 15427355 15450635 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EAF2 3 121835183 121886526 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EAPP 14 34515929 34539711 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EARS2 16 23522014 23557731 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBAG9 8 109539711 109565996 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBF1 5 158695916 159099761 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBF2 8 25841730 26045397 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBF3 10 129835283 129963841 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBF4 20 2692878 2760108 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 16 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBI3 19 4229498 4237531 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBLN1 10 22208814 22210021 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBLN2 3 73061659 73063337 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBNA1BP2 1 43164175 43270936 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 37 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBP 23 48521158 48528716 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EBPL 13 49660723 49691475 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECD 10 73130155 73169055 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECE1 1 21217247 21345572 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECE2 3 184276011 184293031 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 21 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECEL1 2 232479827 232487828 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECH1 19 38815422 38832005 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECHDC1 6 127288710 127343609 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECHDC2 1 52895910 52927212 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECHDC3 10 11742366 11764070 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECHS1 10 133362480 133373689 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECI1 16 2239395 2252300 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECI2 6 4115689 4135597 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECM1 1 150508062 150513789 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECM2 9 92493554 92536655 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 15 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECPAS 9 111360692 111484745 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 52 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECSCR 5 139448556 139462743 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECSIT 19 11505916 11529174 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECT2 3 172750682 172821474 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ECT2L 6 138795926 138904070 TRUE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 21 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDA 23 69616067 70039469 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDA2R 23 66595637 66639298 FALSE 1487 -0.50792792543453 34 64268792 66605144 NA 2 NA NA 2 NA 2336352 NA 8 8 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDAR 2 108894471 108989372 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDARADD 1 236348257 236502915 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDC3 15 74630558 74696292 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDC4 16 67873023 67884503 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDDM13 19 56272769 56310450 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 15 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDDM3A 14 20745892 20748380 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDDM3B 14 20768427 20770948 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDEM1 3 5187646 5219957 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDEM2 20 35115357 35147364 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDEM3 1 184690231 184754913 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDF1 9 136862119 136866286 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDIL3 5 83940554 84384793 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDN1 6 12290363 12297194 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDN2 1 41478775 41484673 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDN3 20 59300427 59325992 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDNRA 4 147480917 147544954 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDNRB 13 77895481 77975529 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EDRF1 10 125719515 125764143 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEA1 12 92770637 92929331 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EED 11 86244544 86278813 TRUE 806 1.61706419993688 100 86201371 86278826 0.593481580287395 13 NA 0.593481580287395 13 NA 77455 NA 1 18 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1A1 6 73515750 73523797 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1A2 20 63488012 63499322 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1AKMT1 13 20728731 20773958 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1AKMT2 10 124748149 124791870 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1AKMT3 12 57771492 57782541 FALSE 894 -0.430411211949774 37 57767016 57809571 NA 2 NA NA 2 NA 42555 NA 6 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1AKMT4 3 184249650 184259585 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1AKMT4-ECE2 3 184249695 184293031 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 30 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1B2 2 206159585 206162928 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1D 8 143579697 143599541 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 18 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1E1 6 8073360 8102578 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1E1-BLOC1S5 6 8015726 8102530 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF1G 11 62559601 62574086 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF2 19 3976056 3985469 FALSE 1278 -0.169406920300239 52 3959118 4043288 0.426118104232275 3 NA 0.426118104232275 3 NA 84170 NA 3 20 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF2K 16 22206282 22288732 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEF2KMT 16 5084304 5097808 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEFSEC 3 128153454 128408646 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EEPD1 7 36153149 36301543 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB1 8 48710789 48735311 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB10 7 105565120 105600875 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB11 14 89794669 89954777 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB12 3 129401321 129428651 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB13 17 47323290 47441312 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 25 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB14 1 46675159 46719064 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB2 1 244969705 245127164 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB3 17 62343941 62416479 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB5 17 29929200 30108452 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 33 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB6 22 43528744 43812337 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 34 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB7 1 63523372 63572693 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB8 20 32858923 32961609 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 29 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCAB9 5 172194172 172203452 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFCC1 3 129001629 129040742 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFEMP1 2 55865967 55924139 FALSE 138 -0.855981369957181 15 55336671 58154699 0.449390955025597 1 0 0.449390955025597 1 0 2818028 1 7 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFEMP2 11 65866441 65873592 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFHB 3 19879472 19947025 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFHC1 6 52362123 52529886 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 28 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFHC2 23 44147882 44343672 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFHD1 2 232606057 232682781 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFHD2 1 15409895 15430343 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFL1 15 82130230 82262763 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 23 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNA1 1 155127460 155134857 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 6 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNA2 19 1286154 1300237 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNA3 1 155078872 155087538 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNA4 1 155063731 155069553 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNA5 5 107376889 107670895 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNB1 23 68828997 68842147 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNB2 13 106489731 106535662 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFNB3 17 7705202 7711378 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFR3A 8 131904088 132013642 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 24 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFR3B 2 25042130 25159137 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFS 14 23356402 23365752 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EFTUD2 17 44849943 44899662 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 29 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGF 4 109912884 110012266 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 26 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGFL6 23 13569605 13633575 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGFL7 9 136658856 136672678 FALSE 706 1.43684729978738 95 136489486 136672674 0.593481580287395 11 NA 0.593481580287395 11 NA 183188 NA 2 18 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGFL8 6 32164583 32168281 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGFLAM 5 38258409 38465021 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 25 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGFR 7 55019021 55211628 FALSE 533 -0.636373738560084 28 50463408 55129820 NA 2 NA NA 2 NA 4666412 NA 8 172 41 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGLN1 1 231363751 231425044 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGLN2 19 40798996 40808433 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGLN3 14 33924231 34462774 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGR1 5 138465490 138469315 TRUE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGR2 10 62811996 62919900 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGR3 8 22687659 22693302 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EGR4 2 73290929 73293705 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHBP1 2 62673851 63046487 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHBP1L1 11 65576038 65592650 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 28 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHD1 11 64851642 64888296 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHD2 19 47713343 47743134 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHD3 2 31234337 31269447 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHD4 15 41895939 41972578 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 10 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHF 11 34621093 34661057 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHHADH 3 185190624 185281990 FALSE 306 -0.731204027242427 21 184824760 185282991 0.328777186374237 1 0 0.328777186374237 1 0 458231 1 4 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHMT1 9 137618963 137870016 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EHMT2 6 31879759 31897687 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 29 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EI24 11 125569216 125584687 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EID1 15 48877886 48880183 FALSE 1026 -0.585321086732959 28 48768195 49422724 NA 2 NA NA 2 NA 654529 NA 7 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EID2 19 39538705 39540333 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EID2B 19 39530990 39532854 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EID3 12 104303739 104305205 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF1 17 41688885 41692668 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF1AD 11 65996545 66002176 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF1AX 23 20124518 20141844 FALSE 1457 2.31736420333436 121 20116837 20141792 0.593481580287395 22 NA 0.593481580287395 22 NA 24955 NA 2 19 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF1B 3 40309684 40312424 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2A 3 150546678 150584242 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2AK1 7 6022244 6059230 FALSE 520 -0.273341933736742 46 6006303 6387310 0.261157737158964 3 NA 0.261157737158964 3 NA 381007 NA 8 24 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2AK2 2 37099210 37157065 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2AK3 2 88556741 88627576 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2AK4 15 39934146 40035591 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 43 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2B1 12 123620406 123633766 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2B2 14 75002911 75012366 FALSE 985 -0.352585010986809 44 74858407 75009033 0.18904974046126 3 NA 0.18904974046126 3 NA 150626 NA 6 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2B3 1 44850522 44986722 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2B4 2 27364352 27370486 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2B5 3 184135038 184146112 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2D 1 206571292 206612463 FALSE 89 -0.761407466237176 18 206507816 206636903 0.387809979850725 1 0 0.387809979850725 1 0 129087 1 3 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2S1 14 67359997 67386516 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2S2 20 34088298 34112332 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2S3 23 24054716 24077971 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF2S3B 12 10505602 10523135 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3A 10 119033670 119080823 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3B 7 2354086 2380745 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3C 16 28688558 28735730 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3D 22 36510850 36529436 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3E 8 108201216 108435333 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 13 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3F 11 7970251 8001862 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3G 19 10115017 10119918 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3H 8 116642130 116766925 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3I 1 32221928 32231604 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3J 15 44537057 44563029 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3K 19 38619082 38636955 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3L 22 37848868 37889407 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF3M 11 32583798 32606262 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4A1 17 7572706 7579005 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4A2 3 186783205 186789900 FALSE 311 1.51298986797314 98 186783424 186790177 0.593481580287395 12 NA 0.593481580287395 12 NA 6753 NA 2 15 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4A3 17 80135214 80147183 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 12 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4B 12 53006158 53042209 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4E 4 98871684 98930637 FALSE 347 2.01374484374905 113 98879395 98891361 0.593481580287395 17 NA 0.593481580287395 17 NA 11966 NA 1 14 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4E1B 5 176630618 176646641 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4E2 2 232550052 232583644 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4E3 3 71675416 71754773 FALSE 267 -0.951688570929534 11 71684747 71785028 0.593443012170704 1 0 0.593443012170704 1 0 100281 1 4 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4EBP1 8 38030341 38060365 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4EBP2 10 70404379 70428618 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4EBP3 5 140547666 140549578 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4ENIF1 22 31436977 31496108 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4G1 3 184314495 184335358 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 36 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4G2 11 10797050 10809110 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4G3 1 20806292 21176888 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF4H 7 74174245 74197101 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF5 14 103333544 103345025 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF5A 17 7306999 7312463 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF5A2 3 170888415 170908693 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF5AL1 10 79512601 79516440 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF5B 2 99337353 99401326 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIF6 20 35278911 35284985 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EIPR1 2 3188925 3377882 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELAC1 18 50967991 50988121 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 6 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELAC2 17 12992391 13018187 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELANE 19 851014 856247 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELAVL1 19 7958579 8005659 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELAVL2 9 23690104 23826337 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELAVL3 19 11451326 11481046 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELAVL4 1 50048014 50203786 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELF1 13 40932028 41061440 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELF2 4 139028112 139177218 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELF3 1 202007945 202017188 TRUE 82 2.09081666610389 117 202008182 202017117 0.593481580287395 18 NA 0.593481580287395 18 NA 8935 NA 1 28 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELF4 23 130064874 130110716 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELF5 11 34478793 34513805 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELFN1 7 1688119 1747954 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELFN2 22 37367960 37427470 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELK1 23 47635521 47650604 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELK3 12 96194382 96269835 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELK4 1 205597556 205631962 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 10 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELL 19 18442663 18522127 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELL2 5 95885098 95962071 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELL3 15 43772600 43777543 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELMO1 7 36854361 37449249 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELMO2 20 46366049 46432985 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELMO3 16 67199111 67204029 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELMOD1 11 107591091 107666779 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELMOD2 4 140524158 140553770 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELMOD3 2 85354394 85391752 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELMSAN1 14 73715122 73790285 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELN 7 74027789 74069907 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 34 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOA 1 23743155 23762059 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOA2 18 47032572 47035621 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOA3C 18 46968695 46969912 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOA3D 18 46962768 46964408 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOB 16 2771414 2777297 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOC 8 73939169 73972287 FALSE 624 2.68488990016947 126 73945573 73972295 0.593481580287395 28 NA 0.593481580287395 28 NA 26722 NA 1 10 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOF1 19 11551147 11559236 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOVL1 1 43363397 43368074 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOVL2 6 10980759 11044314 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOVL3 10 102226328 102229589 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOVL4 6 79914812 79947580 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOVL5 6 53267398 53349179 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOVL6 4 110045846 110199199 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELOVL7 5 60751791 60844389 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELP1 9 108867517 108934116 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 36 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELP2 18 36129444 36180556 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 23 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELP3 8 28089673 28191156 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELP4 11 31509700 31790328 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELP5 17 7251416 7259940 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELP6 3 47495640 47513761 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ELSPBP1 19 47994651 48025153 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMB 5 50396192 50443248 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC1 1 19215664 19251552 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC10 19 50476400 50490870 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC2 8 108443601 108486918 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC3 3 9962537 10011116 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC4 15 34224999 34230156 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC6 17 3668815 3669668 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC7 15 34084017 34101948 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC8 16 85771758 85799608 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMC9 14 24138959 24141588 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMCN 4 100395341 100880126 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMD 23 154379197 154381523 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EME1 17 50373220 50381483 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EME2 16 1773207 1781708 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMG1 12 6970893 6997428 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMID1 22 29205851 29259597 FALSE 1429 -0.86803144327003 13 29058821 29265673 0.522719719214577 1 0 0.522719719214577 1 0 206852 1 4 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMILIN1 2 27078567 27086408 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMILIN2 18 2847030 2915993 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMILIN3 20 41359966 41366827 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EML1 14 99737693 99942060 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EML2 19 45606994 45645629 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EML3 11 62602218 62612765 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 23 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EML4 2 42169350 42332548 FALSE 130 0.37975481487204 68 42169567 42328839 0.389403197422789 6 NA 0.389403197422789 6 NA 159272 NA 1 34 2 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EML5 14 88612431 88792752 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 46 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EML6 2 54723499 54972025 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 43 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMP1 12 13196716 13219939 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMP2 16 10528422 10580698 FALSE 1085 -0.84470762604648 15 10431390 10818508 0.449390955025597 1 0 0.449390955025597 1 0 387118 1 5 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMP3 19 48321509 48330553 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMSY 11 76444923 76553025 FALSE 800 -0.534359574257993 31 75796365 76445038 NA 2 NA NA 2 NA 648673 NA 6 40 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMX1 2 72916260 72936071 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EMX2 10 117542444 117549546 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EN1 2 118842171 118847678 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EN2 7 155458129 155464831 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENAH 1 225486835 225653142 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENAM 4 70628744 70686816 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENC1 5 74627406 74641424 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENDOD1 11 95089810 95132645 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENDOG 9 128818474 128822677 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENDOU 12 47709734 47725567 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENDOV 17 80415165 80438086 FALSE 1236 -0.54950921675465 31 80393401 80476366 NA 2 NA NA 2 NA 82965 NA 3 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENG 9 127815012 127854756 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENGASE 17 79074939 79088599 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 15 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENHO 9 34521040 34523041 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENKD1 16 67662945 67667265 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENKUR 10 24981979 25062279 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENO1 1 8861000 8879250 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENO2 12 6913745 6923698 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENO3 17 4948092 4957131 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENO4 10 116849512 116911788 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 19 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENOPH1 4 82430562 82461091 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENOSF1 18 670324 712676 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 20 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENOX1 13 43213518 43786908 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENOX2 23 130623369 130903317 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPEP 4 110365733 110565285 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPP1 6 131808016 131895155 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 26 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPP2 8 119557086 119673453 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 28 4 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPP3 6 131628442 131747418 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 38 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPP4 6 46129993 46146699 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPP5 6 46159187 46170971 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 8 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPP6 4 184088706 184221230 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENPP7 17 79730919 79742222 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENSA 1 150600851 150629612 FALSE 55 -0.603676872005541 28 150622798 150876627 NA 2 NA NA 2 NA 253829 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTHD1 22 39743044 39893864 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD1 10 95711779 95869695 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 14 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD2 9 137048098 137054045 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD3 3 40387156 40428744 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD4 8 23385783 23457695 FALSE 587 -0.617990634731161 28 23333640 23673741 NA 2 NA NA 2 NA 340101 NA 3 14 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD5 14 73958010 74019399 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD6 20 25195693 25226729 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD7 10 99659506 99706240 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 15 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTPD8 9 137434364 137441816 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENTR1 9 136401922 136410609 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ENY2 8 109334324 109345953 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EOGT 3 68975214 69013961 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 15 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EOMES 3 27715949 27722711 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EP300 22 41091786 41180079 TRUE 1443 1.36966159370907 91 41092743 41180049 0.593481580287395 11 NA 0.593481580287395 11 NA 87306 NA 1 56 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EP400 12 131949920 132081102 TRUE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 62 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPAS1 2 46293667 46386703 FALSE 133 0.890294183401465 80 46010513 46386696 0.593481580287395 7 NA 0.593481580287395 7 NA 376183 NA 2 34 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB41 1 28887091 29120046 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB41L1 20 36091504 36232799 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB41L2 6 130839347 131063322 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 25 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB41L3 18 5392381 5630700 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB41L4A 5 112142441 112419316 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB41L4B 9 109171975 109320964 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 29 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB41L5 2 120013005 120179119 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPB42 15 43197227 43221125 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPC1 10 32267751 32378798 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPC2 2 148644440 148787568 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPCAM 2 47345158 47387601 TRUE 135 0.236810884901957 64 47340190 47906327 0.593443012170704 4 NA 0.593443012170704 4 NA 566137 NA 5 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPDR1 7 37683843 37951941 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPG5 18 45847609 45967339 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 49 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPGN 4 74308473 74315307 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA1 7 143390289 143408892 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA10 1 37713880 37765133 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 23 5 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA2 1 16124337 16156087 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA3 3 89107524 89482134 TRUE 272 0.230614716198465 64 89107702 89472575 0.593443012170704 4 NA 0.593443012170704 4 NA 364873 NA 1 33 9 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA4 2 221418027 221574202 FALSE 218 -0.971518626236312 11 219598162 221572239 0.593443012170704 1 0 0.593443012170704 1 0 1974077 1 3 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA5 4 65319563 65670495 FALSE 341 0.996014756730449 82 64409227 65670360 0.593481580287395 8 NA 0.593481580287395 8 NA 1261133 NA 2 48 7 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA6 3 96814581 97752460 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 27 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA7 6 93240020 93419547 TRUE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 43 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHA8 1 22563564 22603594 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHB1 3 134597801 135260467 TRUE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 51 4 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHB2 1 22710839 22921500 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHB3 3 184561784 184582409 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 20 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHB4 7 100802565 100827521 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHB6 7 142855061 142871094 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 21 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHX1 1 225810092 225845563 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHX2 8 27490779 27545564 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 19 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHX3 19 15226919 15233435 FALSE 1309 -0.508406230875026 34 15197558 15232214 NA 2 NA NA 2 NA 34656 NA 2 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPHX4 1 92029982 92063536 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPM2A 6 145382535 145736023 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPM2AIP1 3 36985043 36993168 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 9 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPN1 19 55675226 55709858 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPN2 17 19215615 19336715 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPN3 17 50532543 50543750 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPO 7 100720800 100723700 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPOP 17 38671703 38675421 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPOR 19 11377205 11384342 FALSE 1301 2.09540613156447 117 11377386 11384318 0.593481580287395 18 NA 0.593481580287395 18 NA 6932 NA 1 14 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPPIN 20 45540626 45547752 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPPIN-WFDC6 20 45536986 45547426 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPPK1 8 143857324 143878464 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 28 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPRS 1 219968601 220046658 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 35 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPS15 1 51354263 51519328 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPS15L1 19 16355239 16472085 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPS8 12 15620158 15882329 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPS8L1 19 55072020 55087923 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 21 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPS8L2 11 694438 727727 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 29 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPS8L3 1 109750080 109764027 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPSTI1 13 42886388 42992271 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPX 17 58192737 58205174 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EPYC 12 90963679 91005026 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EQTN 9 27284659 27297139 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERAL1 17 28854938 28861067 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERAP1 5 96760810 96808100 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 28 10 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERAP2 5 96875939 96919716 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERAS 23 48826513 48830138 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERBB2 17 39687914 39730426 FALSE 1173 -0.600812074431575 28 39564387 39699581 NA 2 NA NA 2 NA 135194 NA 8 49 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERBB3 12 56076799 56103505 FALSE 885 1.22657425947463 87 56076841 56103531 0.593481580287395 9 NA 0.593481580287395 9 NA 26690 NA 2 46 5 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERBB4 2 211375717 212538841 FALSE 210 2.12242125721759 118 211375895 211384007 0.593481580287395 19 NA 0.593481580287395 19 NA 8112 NA 1 60 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERBIN 5 65926475 66082549 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERC1 12 990509 1495933 FALSE 830 1.25748535943082 89 912147 1083403 0.593481580287395 10 NA 0.593481580287395 10 NA 171256 NA 2 22 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERC2 3 55508308 56468363 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC1 19 45407333 45478828 FALSE 1348 0.0505055964886688 60 45373781 45485732 0.593443012170704 3 NA 0.593443012170704 3 NA 111951 NA 5 28 6 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC2 19 45349837 45370918 TRUE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 34 7 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC3 2 127257290 127294176 TRUE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 25 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC4 16 13920157 13952345 TRUE 1088 0.793860618263716 79 13235104 13947792 0.593481580287395 7 NA 0.593481580287395 7 NA 712688 NA 2 46 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC5 13 102807146 102876001 TRUE 955 -0.955371764625064 11 102750415 102839799 0.593443012170704 1 0 0.593443012170704 1 0 89384 1 6 45 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC6 10 49455368 49539538 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 37 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC6L 23 72204657 72239047 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC6L2 9 95875701 96014571 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERCC8 5 60873831 60945073 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EREG 4 74365143 74388751 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERF 19 42247572 42255157 TRUE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERFE 2 238158982 238168900 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERG 21 38380027 38661780 FALSE 1404 2.24390659859961 120 38380033 38383691 0.593481580287395 21 NA 0.593481580287395 21 NA 3658 NA 2 31 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERG28 14 75649791 75661189 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERGIC1 5 172834275 172952685 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERGIC2 12 29337352 29381189 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERGIC3 20 35542021 35557634 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERH 14 69380123 69398627 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERI1 8 9002147 9116746 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 9 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERI2 16 20780193 20900349 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 50 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERI3 1 44221070 44355260 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERICH1 8 614746 738106 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERICH2 2 170783786 170798971 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERICH3 1 74568111 74673738 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERICH4 19 41443158 41444765 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERICH5 8 98064311 98093610 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERICH6 3 150659885 150703971 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERICH6B 13 45534522 45615739 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERLEC1 2 53787044 53818819 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERLIN1 10 100150094 100188334 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERLIN2 8 37736601 37759101 FALSE 602 -0.505077512744522 34 37737957 37840791 NA 2 NA NA 2 NA 102834 NA 3 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERMAP 1 42817088 42844993 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERMARD 6 169751622 169781584 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERMN 2 157318625 157327713 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERMP1 9 5765076 5833117 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 27 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERN1 17 64039142 64130819 FALSE 1214 -0.224902535009953 49 63943066 64214199 0.331933131290263 3 NA 0.331933131290263 3 NA 271133 NA 5 25 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERN2 16 23690326 23713500 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 23 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERO1A 14 52639916 52695900 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERO1B 1 236215555 236281985 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 16 6 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERP27 12 14914035 14939082 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERP29 12 112013316 112023451 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERP44 9 99979179 100099040 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERRFI1 1 8004404 8026308 TRUE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERV3-1 7 64990809 65006743 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERVFRD-1 6 11102489 11111732 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERVMER34-1 4 52722618 52751640 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 7 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERVV-1 19 53013921 53016122 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 5 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERVV-2 19 53044738 53051076 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 7 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ERVW-1 7 92468380 92477986 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESAM 11 124752583 124762290 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESCO1 18 21529281 21600884 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESCO2 8 27771949 27812640 TRUE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESD 13 46771256 46797232 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESF1 20 13714322 13784886 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESM1 5 54977864 55022671 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESPL1 12 53268299 53293643 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 40 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESPN 1 6424776 6461367 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESPNL 2 238100157 238133287 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 17 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESR1 6 151656691 152129619 FALSE 506 -0.933338902263755 13 151405214 151686189 0.522719719214577 1 0 0.522719719214577 1 0 280975 1 4 60 13 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESR2 14 64084232 64338112 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 74 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESRP1 8 94641074 94707466 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 17 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESRP2 16 68229111 68238102 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESRRA 11 64305572 64316743 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESRRB 14 76310712 76501837 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESRRG 1 216503246 217137755 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESS2 22 19130279 19144684 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 16 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESX1 23 104250038 104254933 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESYT1 12 56118250 56144671 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 35 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESYT2 7 158730995 158830253 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ESYT3 3 138434586 138481686 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 26 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETAA1 2 67397319 67412089 TRUE 145 2.04124002810211 115 66512135 68042936 0.593481580287395 18 NA 0.593481580287395 18 NA 1530801 NA 3 14 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETDA 23 135252061 135253583 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETDB 23 135118955 135120526 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETDC 23 135309480 135309659 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETF1 5 138506095 138543300 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETFA 15 76215355 76311472 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETFB 19 51345169 51366418 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETFBKMT 12 31647160 31673114 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETFDH 4 158672125 158709623 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETFRF1 12 25195216 25209645 FALSE 859 1.90548292081574 111 25200284 25250766 0.593481580287395 16 NA 0.593481580287395 16 NA 50482 NA 2 20 7 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETHE1 19 43506719 43527244 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETNK1 12 22625075 22690665 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETNK2 1 204131062 204152003 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETNPPL 4 108742040 108763054 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETS1 11 128458761 128587558 FALSE 822 1.72197466169248 103 128458828 128840198 0.593481580287395 14 NA 0.593481580287395 14 NA 381370 NA 3 29 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETS2 21 38805307 38824955 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV1 7 13891228 13991425 FALSE 523 2.08353847840488 117 13891325 13915325 0.593481580287395 18 NA 0.593481580287395 18 NA 24000 NA 1 319 14 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV2 19 35641745 35644871 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV3 1 157121191 157138474 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV3L 1 157092044 157099808 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV4 17 43527844 43579620 FALSE 1192 2.32635181638886 121 43527985 43546322 0.593481580287395 22 NA 0.593481580287395 22 NA 18337 NA 2 55 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV5 3 186046308 186110318 FALSE 309 1.66772126965792 102 186046310 186108950 0.593481580287395 13 NA 0.593481580287395 13 NA 62640 NA 2 71 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV6 12 11649854 11895402 TRUE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 443 84 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ETV7 6 36354091 36387800 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVA1A 2 75469302 75569722 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVA1B 1 36322031 36324154 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVA1C 21 32412006 32515397 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVC 4 5711197 5814305 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 24 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVC2 4 5542772 5709548 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 27 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVI2A 17 31317560 31321884 FALSE 1162 1.15409771633477 85 31090043 31387166 0.593481580287395 9 NA 0.593481580287395 9 NA 297123 NA 5 4 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVI2B 17 31303766 31314112 FALSE 1162 1.15409771633477 85 31090043 31387166 0.593481580287395 9 NA 0.593481580287395 9 NA 297123 NA 5 6 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVI5 1 92508696 92792404 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 24 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVI5L 19 7830233 7864976 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVL 14 99971449 100144236 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVPL 17 76004502 76027452 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 37 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVPLL 17 18377662 18389647 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVX1 7 27242700 27250493 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EVX2 2 176077472 176083913 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EWSR1 22 29268009 29300525 FALSE 1430 1.45955059636363 95 29268132 29308135 0.593481580287395 11 NA 0.593481580287395 11 NA 40003 NA 3 58 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXD1 15 41182725 41230743 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXD2 14 69191511 69244020 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXD3 9 137306896 137423262 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 26 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXO1 1 241847967 241895148 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXO5 1 40508741 40516556 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC1 4 55853616 55905034 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC1L 4 55819819 55837487 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC2 6 485133 693111 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 31 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC3 5 443158 471937 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC3L1 16 67184366 67190204 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC3L2 19 45212621 45245431 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC3L4 14 103100144 103110559 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 15 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC4 7 133253073 134066589 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC5 14 57200507 57269008 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC6 10 92834713 93059493 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC6B 2 72175984 72826041 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC7 17 76081017 76121576 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 26 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOC8 1 231332753 231337852 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOG 3 38496127 38542161 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC1 10 97436142 97446017 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC10 1 11066618 11099881 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC2 9 130693721 130704894 FALSE 696 -0.58350626283648 28 130285267 130703742 NA 2 NA NA 2 NA 418475 NA 5 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC3 9 37766978 37801437 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC4 8 144078626 144080647 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC5 19 41386374 41397479 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC6 16 70246778 70251930 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC7 3 44975241 45036066 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC8 13 36998816 37009613 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXOSC9 4 121801317 121817021 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXPH5 11 108505431 108593738 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 27 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXT1 8 117794490 118111853 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXT2 11 44095549 44245429 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXTL1 1 26019884 26036464 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXTL2 1 100872372 100895998 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EXTL3 8 28600469 28755599 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EYA1 8 71197433 71592025 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 18 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EYA2 20 46894624 47188844 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EYA3 1 27970344 28088696 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EYA4 6 133240598 133532120 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EYS 6 63719980 65707225 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 69 8 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EZH1 17 42700275 42745049 FALSE 1188 1.11948544866103 84 42700444 42728862 0.593481580287395 9 NA 0.593481580287395 9 NA 28418 NA 1 29 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EZH2 7 148807383 148884321 TRUE 572 1.12688572709581 84 148802359 149004042 0.593481580287395 9 NA 0.593481580287395 9 NA 201683 NA 2 28 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 EZR 6 158765741 158819412 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 19 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F10 13 113122814 113149529 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F11 4 186265945 186288806 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F11R 1 160995211 161021348 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F12 5 177402140 177409576 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F13A1 6 6144085 6321013 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F13B 1 197038741 197067267 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F2 11 46719180 46739506 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F2R 5 76716043 76735781 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F2RL1 5 76818933 76835315 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F2RL2 5 76615482 76623434 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F2RL3 19 16888860 16892606 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F3 1 94529225 94541800 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F5 1 169514166 169586588 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 39 10 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F7 13 113105788 113120681 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F8 23 154835788 155026940 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 42 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F8A1 23 154886349 154888061 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 F9 23 139530758 139563458 FALSE 1520 -0.880146503545695 13 138739250 139832175 0.522719719214577 1 0 0.522719719214577 1 0 1092925 1 4 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FA2H 16 74712955 74774831 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAAH 1 46394265 46413848 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAAH2 23 57286706 57489196 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 12 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAAP100 17 81539885 81553961 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 14 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAAP20 1 2184461 2212720 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAAP24 19 32972209 32978222 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP1 2 88122982 88128116 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP12 8 81524981 81531378 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP2 4 119317250 119322390 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP3 1 31365625 31376850 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP4 8 81478419 81483263 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP5 8 81280363 81284777 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP6 5 160187367 160238735 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP7 6 122779475 122784074 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FABP9 8 81458341 81461579 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FADD 11 70203163 70207390 FALSE 796 -0.528927183156658 34 70103077 71501385 NA 2 NA NA 2 NA 1398308 NA 7 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FADS1 11 61799625 61829318 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FADS2 11 61792980 61867354 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 32 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FADS3 11 61873519 61892051 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FADS6 17 74877299 74893781 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAF1 1 50437028 50960263 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 20 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAF2 5 176447628 176510074 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAH 15 80152490 80186946 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAHD1 16 1826941 1840207 FALSE 1067 -1.44672659369112 3 1809849 1868124 0.495458993698265 0 0 0.495458993698265 0 0 58275 0 3 6 1 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAHD2A 2 95402721 95416616 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAHD2B 2 97083583 97094882 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAIM 3 138608606 138633376 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 7 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAIM2 12 49866896 49904217 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM102A 9 127940579 127980513 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM102B 1 108560089 108644900 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM104A 17 73207353 73236753 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM104B 23 55143102 55161310 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM107A 3 58564117 58627610 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM107B 10 14518557 14774897 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM110A 20 833715 857463 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM110B 8 57994509 58204279 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM110C 2 38814 46870 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM110D 1 26159020 26163962 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM111A 11 59142748 59155039 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM111B 11 59107185 59127410 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM114A1 4 38867677 38945739 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM114A2 5 153990128 154038936 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM117A 17 49710332 49789180 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM117B 2 202635188 202769757 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM118A 22 45308968 45341955 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM118B 11 126211414 126262986 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM120A 9 93451722 93566107 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 25 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM120AOS 9 93431441 93453592 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM120B 6 170290703 170407065 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM120C 23 54068324 54183281 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM122A 9 68780034 68784608 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM122B 23 134769566 134797232 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM122C 23 134796395 134854835 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM124A 13 51222334 51284241 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM124B 2 224378698 224402085 FALSE 221 0.988042645337441 82 224379635 224585298 0.593481580287395 8 NA 0.593481580287395 8 NA 205663 NA 2 6 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM126A 7 22889371 23014130 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM126B 2 200973718 201071671 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM129A 1 184790724 184974550 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM129B 9 127505339 127578989 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM129C 19 17523301 17553839 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM131A 3 184335926 184348421 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM131B 7 143353400 143362770 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM131C 1 16057769 16073632 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM133A 23 93674013 93712274 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM133B 7 92560793 92590394 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM135A 6 70412941 70561174 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 30 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM135B 8 138130023 138496822 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 28 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM136A 2 70295975 70302090 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM13A 4 88725955 89111398 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM13B 5 137937960 138051961 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM13C 10 59246129 59363181 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM149A 4 186104419 186172667 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM149B1 10 73168166 73244504 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM151A 1 54609182 54623556 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM151B 5 80487969 80542563 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM153A 5 177707981 177783398 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM153B 5 176060689 176116015 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM153C 5 178006405 178055559 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM155A 13 107163510 107866735 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM155B 23 69505241 69532508 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 7 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM160A1 4 151409216 151663632 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM160A2 11 6211335 6234711 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM160B1 10 114821744 114899832 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM160B2 8 22089159 22104898 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM161A 2 61824854 61854143 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM161B 14 73931501 73950414 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM162A 3 122384176 122412334 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM162B 6 116752197 116765723 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM163A 1 179743163 179816198 FALSE 74 -0.589588184480294 28 179302743 179846780 NA 2 NA NA 2 NA 544037 NA 6 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM163B 9 133578415 133586197 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM166A 9 137243584 137247770 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM166B 9 35561831 35563899 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM167A 8 11421463 11475908 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM167B 1 32247233 32248856 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM168A 11 73400487 73598189 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM168B 2 131047876 131093460 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM169A 5 74777574 74866951 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM169B 15 98437162 98547728 FALSE 1059 -0.999534667247782 11 93072984 98485893 0.593443012170704 1 0 0.593443012170704 1 0 5412909 1 6 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM170A 5 119629559 119635822 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM170B 10 49131154 49134008 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM171A1 10 15211643 15371062 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM171A2 17 44353215 44363875 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM171B 2 186693971 186765965 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM172A 5 93618069 94111699 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM173A 16 720581 722601 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 5 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM173B 5 10226330 10249897 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM174A 5 100535305 100586741 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM174B 15 92617443 92809884 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM177A1 14 35044907 35113130 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM177B 1 222737207 222750805 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM178B 2 96875882 96986592 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM180A 7 135728348 135748846 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM180B 11 47586693 47589194 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM181A 14 93918894 93929608 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM181B 11 82729941 82733864 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM183A 1 43145153 43156396 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM184A 6 118959763 119149387 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 22 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM184B 4 17629306 17781512 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM185A 7 102748971 102809225 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM186A 12 50326230 50396622 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM186B 12 49582885 49605639 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM187A 17 44899712 44905390 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM187B 19 35224800 35228729 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 5 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM189A1 15 29120254 29570723 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM189A2 9 69324567 69392558 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM189B 1 155247205 155255483 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM192A 16 57152466 57186116 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM193A 4 2536631 2732565 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM193B 5 177519788 177554541 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM198A 3 42979267 43060211 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM198B 4 158124474 158173318 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM199X 23 104166620 104195902 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM19A1 3 68004216 68545625 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM19A2 12 61708259 62279150 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM19A3 1 112720419 112727235 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM19A4 3 68731766 68953297 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM19A5 22 48489460 48850912 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM200A 7 99546308 99558536 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM200B 4 15681662 15705565 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM204A 10 118297930 118342328 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM205A 9 34723055 34729467 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 18 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM205C 9 34889064 34895778 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM206A 9 108934181 108950744 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM207A 21 44940010 44976989 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM208A 3 56620133 56683237 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 35 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM208B 10 5684838 5763740 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 38 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM209A 20 56517187 56526142 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM209B 20 56533246 56536520 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 2 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM20A 17 68535113 68601389 FALSE 1221 2.06033110076376 115 68512530 68551268 0.593481580287395 18 NA 0.593481580287395 18 NA 38738 NA 2 15 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM20B 1 179025804 179076562 FALSE 71 -0.473468583840393 37 177944644 179094120 NA 2 NA NA 2 NA 1149476 NA 8 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM20C 7 192969 260745 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM210A 18 13663347 13726663 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM210B 20 56358915 56368663 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM214A 15 52581317 52709817 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM214B 9 35104112 35116341 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM216A 12 110468364 110490385 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM216B 13 42781550 42791549 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM217A 6 4049434 4087344 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM217B 20 59933764 59948680 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM218A 4 164956948 164959122 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM219A 9 34398184 34458570 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM219B 15 74899987 74907121 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM220A 7 6329409 6348981 FALSE 520 -0.273341933736742 46 6006303 6387310 0.261157737158964 3 NA 0.261157737158964 3 NA 381007 NA 8 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM221A 7 23680130 23703249 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM221B 9 35816391 35828747 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM222A 12 109714228 109770507 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM222B 17 28755978 28855232 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM227A 22 38578120 38656629 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM227B 15 49326962 49620931 FALSE 1026 -0.585321086732959 28 48768195 49422724 NA 2 NA NA 2 NA 654529 NA 7 42 7 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM228A 2 24175069 24200849 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM228B 2 24076526 24169640 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM229A 1 32361270 32364278 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM229B 6 112087599 112102790 FALSE 482 -0.684947044489322 25 112071952 113860176 0.276933305076759 1 0 0.276933305076759 1 0 1788224 1 6 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM234A 16 234546 268971 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM234B 12 13044284 13142521 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM236C 23 72912615 72913401 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM236D 23 72807425 72808210 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM237A 2 206642412 206649011 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM240A 3 46612435 46626543 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM241A 4 112145397 112195256 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM241B 10 69630251 69633599 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM24A 10 122910701 122913111 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM24B 10 122849078 122879641 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM25A 10 87020306 87024730 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM25C 10 47995355 47999791 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM25G 10 47487219 47491693 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM32A 19 16185380 16192046 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM3A 23 154506159 154516242 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM3B 21 41304212 41357431 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM3C 7 121348851 121396364 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM3D 3 58633946 58666848 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM43A 3 194686544 194689037 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM43B 1 20552439 20555010 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM45A 10 119104086 119137984 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM47A 23 34129756 34132314 FALSE 1463 -0.0126664078313421 56 34129908 36073394 0.593443012170704 3 NA 0.593443012170704 3 NA 1943486 NA 5 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM47B 23 34942796 34944915 FALSE 1463 -0.0126664078313421 56 34129908 36073394 0.593443012170704 3 NA 0.593443012170704 3 NA 1943486 NA 5 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM47C 23 37008397 37011666 FALSE 1465 0.0749747101580098 60 36236724 37572322 0.593443012170704 3 NA 0.593443012170704 3 NA 1335598 NA 5 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM47E 4 76214040 76283780 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM47E-STBD1 4 76251721 76311129 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM49A 2 16549459 16666331 FALSE 113 -0.742826346277415 18 16552911 17753891 0.387809979850725 1 0 0.387809979850725 1 0 1200980 1 5 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM49B 8 129839593 130017129 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM50A 23 154444126 154450654 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM50B 6 3849373 3851320 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM53A 4 1617915 1684302 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM53B 10 124619292 124744269 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM53C 5 138331935 138349729 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM57A 17 732412 742972 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM57B 16 30024427 30052978 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM69A 1 92832737 92961522 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM69B 9 136712570 136724050 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM69C 18 74434099 74457944 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71A 1 212624474 212626778 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71B 5 157161846 157166264 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71C 12 99647753 99650046 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71D 14 67189393 67228550 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71E1 19 50466785 50476753 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71E2 19 55354908 55363260 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 15 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71F1 7 128709061 128731743 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM71F2 7 128672288 128687872 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM72A 1 206186179 206204414 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM72B 1 121167646 121185539 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM72C 1 143955364 143971965 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM72D 1 145096000 145112696 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM76A 1 27725979 27763122 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM76B 11 95768942 95790409 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM78A 9 131258076 131276547 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM78B 1 166057426 166166969 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM81A 15 59372693 59523549 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM81B 5 95391344 95450454 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83A 8 123178960 123210079 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83B 6 54846771 54942022 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83C 20 35285731 35292401 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83D 20 38926312 38953106 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83E 19 48600810 48614854 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83F 22 39994949 40043529 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83G 17 18968789 19004804 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM83H 8 143723933 143733801 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 15 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM84A 2 14632686 14650814 FALSE 111 1.38092266252683 93 12723544 15627171 0.593481580287395 11 NA 0.593481580287395 11 NA 2903627 NA 4 7 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM84B 8 126552442 126558393 FALSE 637 4.54977513834599 137 125436307 127746790 0.593481580287395 107 NA 0.593481580287395 107 NA 2310483 NA 4 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM86B1 8 12182096 12194133 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 4 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM86B2 8 12425614 12436343 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 3 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM86C1 11 71787510 71801236 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM89A 1 231018958 231040246 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM89B 11 65572349 65574198 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM8A1 6 17600355 17611719 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM90A1 12 8221260 8227618 FALSE 843 1.01512045445363 83 8175907 8224749 0.593481580287395 8 NA 0.593481580287395 8 NA 48842 NA 2 7 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM91A1 8 123768456 123815452 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 24 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM92A 8 93698561 93731527 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 9 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM92B 16 85098358 85112508 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM95C 9 38540569 38577207 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM98A 2 33583658 33599382 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 10 0 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM98B 15 38454127 38487710 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM98C 19 38403135 38409088 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM9A 23 8790795 8801383 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM9B 23 9024232 9164639 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAM9C 23 13035618 13044682 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAN1 15 30903852 30943108 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCA 16 89737549 89816657 TRUE 1129 0.872740185272387 80 89737756 89816527 0.593481580287395 7 NA 0.593481580287395 7 NA 78771 NA 2 56 12 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCB 23 14835961 14873069 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCC 9 95099054 95426796 TRUE 681 1.64542052306264 100 95099184 95249334 0.593481580287395 13 NA 0.593481580287395 13 NA 150150 NA 1 48 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCD2 3 10026414 10101930 TRUE 234 0.284123196163012 66 10021453 10155649 0.593443012170704 4 0 0.593443012170704 4 0 134196 4 4 60 15 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCD2OS 3 10081317 10108231 FALSE 234 0.284123196163012 66 10021453 10155649 0.593443012170704 4 0 0.593443012170704 4 0 134196 4 4 22 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCE 6 35452356 35467103 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCF 11 22622890 22625841 FALSE 768 1.57260977131452 98 22622545 22685763 0.593481580287395 12 NA 0.593481580287395 12 NA 63218 NA 2 11 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCG 9 35073835 35080016 FALSE 664 1.6890502412816 102 35073910 35079969 0.593481580287395 14 NA 0.593481580287395 14 NA 6059 NA 1 19 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCI 15 89243949 89317261 FALSE 1050 0.848645165322412 80 89244011 89319110 0.593481580287395 7 NA 0.593481580287395 7 NA 75099 NA 2 45 9 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCL 2 58159243 58241372 FALSE 139 1.11141073584028 84 58159300 60546292 0.593481580287395 9 NA 0.593481580287395 9 NA 2386992 NA 3 53 5 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANCM 14 45135940 45200890 FALSE 978 1.99569505490724 113 45135974 45200556 0.593481580287395 17 NA 0.593481580287395 17 NA 64582 NA 1 57 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FANK1 10 125896539 126009592 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAP 2 162170684 162245151 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAR1 11 13668670 13732346 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAR2 12 29149103 29340980 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FARP1 13 98142562 98455176 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 35 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FARP2 2 241356243 241494841 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 30 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FARS2 6 5261044 5829192 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FARSA 19 12922479 12934037 FALSE 1303 -0.374175356398884 41 12847883 12933687 NA 2 NA NA 2 NA 85804 NA 7 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FARSB 2 222570536 222656337 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAS 10 88990582 89015785 TRUE 735 1.66124206956385 101 88967253 89029659 0.593481580287395 13 3 0.593481580287395 13 3 62406 10 3 23 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FASLG 1 172659018 172666874 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FASN 17 82078333 82098332 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 49 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FASTK 7 151076593 151080866 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FASTKD1 2 169529749 169573875 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FASTKD2 2 206765357 206792509 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FASTKD3 5 7859159 7869037 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FASTKD5 20 3146519 3159897 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAT1 4 186587783 186726722 TRUE 364 0.334249329341475 67 186588591 186731793 0.593443012170704 4 NA 0.593443012170704 4 NA 143202 NA 1 83 7 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAT2 5 151504093 151568944 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 63 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAT3 11 92352096 92896470 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 66 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAT4 4 125316399 125492932 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 67 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FATE1 23 151716035 151723194 FALSE 1523 0.354095779845526 68 151672691 151744394 0.389403197422789 6 NA 0.389403197422789 6 NA 71703 NA 4 5 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAU 11 65120628 65122473 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAXC 6 99271169 99350062 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FAXDC2 5 154818491 154859252 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBF1 17 75909574 75941140 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBH1 10 5890203 5937594 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBL 19 39834458 39846414 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBLIM1 1 15756607 15786594 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBLL1 5 168529116 168530634 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBLN1 22 45502238 45601135 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBLN2 3 13549131 13638422 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBLN5 14 91869412 91947987 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBLN7 2 112138385 112188216 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBN1 15 48408306 48645849 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 67 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBN2 5 128257909 128659185 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 69 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBN3 19 8065402 8149846 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 68 16 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBP1 9 94603133 94640249 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 8 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBP2 9 94558720 94593793 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBRS 16 30658431 30670814 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBRSL1 12 132489551 132585188 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL12 19 9810267 9827816 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL13 7 102813230 103074843 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 28 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL14 12 1565993 1594165 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL15 10 102419189 102423136 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL16 16 692498 705829 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL17 5 107859035 108382098 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL18 7 5431335 5513798 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 14 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL19 16 30923055 30948783 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL2 3 33277025 33403662 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL20 17 39252644 39402523 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL22 15 63597353 63602428 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL3 13 76992598 77027195 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL4 6 98868538 98948006 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL5 4 15604539 15681679 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL6 8 144355431 144359376 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 11 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL7 5 15500196 15939795 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXL8 16 67159931 67164570 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO10 9 37510892 37576349 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO11 2 47789316 47905793 TRUE 135 0.236810884901957 64 47340190 47906327 0.593443012170704 4 NA 0.593443012170704 4 NA 566137 NA 5 66 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO15 18 74073353 74147865 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO16 8 28348287 28490318 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO17 19 38941401 38975910 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO2 1 11637018 11655785 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO21 12 117141988 117190531 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO22 15 75903859 75942510 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO24 7 100583982 100601117 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO25 8 406428 477967 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO27 19 38990714 39032785 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO28 1 224114087 224162047 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO3 11 33740939 33774543 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO30 6 145793502 145814753 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO31 16 87326987 87392142 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO32 8 123497889 123541206 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO33 14 39397669 39432500 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO34 14 55271303 55361918 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO36 2 229922302 230013109 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO38 5 148383935 148442836 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO39 17 6776223 6797101 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO4 5 41925254 41941743 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO40 3 121593119 121630295 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO41 2 73254682 73284431 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO42 1 16246839 16352454 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO43 8 100133360 100145800 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO44 1 11654375 11663327 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO45 3 196568611 196589059 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO46 19 45710629 45730904 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO47 17 38936432 38967402 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO48 2 68459419 68467258 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO5 6 152970519 152983579 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO6 1 11664124 11674354 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO7 22 32474676 32498829 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO8 4 174236658 174284264 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXO9 6 53051991 53100873 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW10 17 18744024 18779349 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW11 5 171861549 172006873 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW12 3 48372219 48401259 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW2 9 120751978 120793412 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW4 10 101610664 101695295 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW5 9 136940435 136944696 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW7 4 152320544 152536063 TRUE 358 1.60479650121615 100 152320732 152541133 0.593481580287395 13 NA 0.593481580287395 13 NA 220401 NA 1 43 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW8 12 116910956 117031148 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FBXW9 19 12688053 12696643 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCAMR 1 206957965 206970625 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCAR 19 54874248 54890472 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCER1A 1 159289714 159308224 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCER1G 1 161215234 161220699 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCER2 19 7688758 7702146 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCF1 14 74713144 74738620 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGBP 19 39863323 39934626 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 61 23 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGR1A 1 149782671 149792518 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGR1B 1 121087345 121096310 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGR2A 1 161505430 161524013 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGR2B 1 161663147 161678654 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGR3A 1 161541759 161550737 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGR3B 1 161623196 161631963 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCGRT 19 49506816 49526333 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCHO1 19 17747718 17788568 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 28 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCHO2 5 72955981 73090522 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCHSD1 5 141639302 141651419 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 24 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCHSD2 11 72836745 73142261 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCMR 1 206904386 206923247 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCN1 9 134905890 134917963 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCN2 9 134880812 134887520 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCN3 1 27369112 27374824 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRL1 1 157794403 157820105 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRL2 1 157745733 157777132 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRL3 1 157674321 157700857 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRL4 1 157573749 157598080 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRL5 1 157513377 157552520 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRL6 1 159800511 159816251 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRLA 1 161706972 161714352 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FCRLB 1 161721563 161728143 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FDCSP 4 70226071 70235252 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FDFT1 8 11795573 11839309 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FDPS 1 155308748 155320666 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FDX1 11 110429883 110464881 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FDX2 19 10310045 10316015 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FDXACB1 11 111874056 111881243 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 10 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FDXR 17 74862497 74873031 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 14 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FECH 18 57548283 57586772 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEM1A 19 4791681 4801273 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEM1B 15 68277803 68295865 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEM1C 5 115520908 115544894 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEN1 11 61792637 61797244 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FER 5 108747822 109196841 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FER1L5 2 96642737 96704887 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 51 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FER1L6 8 123851987 124120061 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 41 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FERD3L 7 19144782 19145421 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FERMT1 20 6074845 6123544 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FERMT2 14 52857268 52952435 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FERMT3 11 64206678 64223886 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FES 15 90883695 90895776 FALSE 1056 0.0480309521361265 60 90717402 90913593 0.593443012170704 3 NA 0.593443012170704 3 NA 196191 NA 4 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FETUB 3 186635969 186653141 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEV 2 218981087 218985657 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEZ1 11 125442881 125592568 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 25 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEZ2 2 36531805 36646087 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEZF1 7 122301394 122310691 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FEZF2 3 62369681 62374324 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FFAR1 19 35351552 35353862 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FFAR2 19 35443907 35451767 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FFAR3 19 35358460 35360485 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FFAR4 10 93566665 93604480 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGA 4 154583126 154590766 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGB 4 154562956 154571086 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGD1 23 54445454 54496166 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGD2 6 37005646 37029070 FALSE 462 -0.524992064635535 34 36717398 37027971 NA 2 NA NA 2 NA 310573 NA 7 17 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGD3 9 92947451 93036236 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 18 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGD4 12 32399529 32646050 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 21 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGD5 3 14810853 14934565 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGD6 12 95076749 95217482 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF1 5 142592178 142698070 FALSE 401 1.92805410531954 111 142314231 142873518 0.593481580287395 16 NA 0.593481580287395 16 NA 559287 NA 3 21 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF10 5 44303544 44389706 FALSE 375 2.07572131362409 117 44300254 45262566 0.593481580287395 18 NA 0.593481580287395 18 NA 962312 NA 3 12 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF11 17 7438273 7444937 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF12 3 192139395 192767764 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF13 23 138614731 139222777 FALSE 1519 0.0708401583431336 60 136780801 138711057 0.593443012170704 3 NA 0.593443012170704 3 NA 1930256 NA 5 9 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF14 13 101710804 102402457 FALSE 952 2.22639451370356 119 101710901 102402266 0.593481580287395 20 3 0.593481580287395 20 3 691365 17 2 61 15 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF16 23 77447405 77457278 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF17 8 22042398 22048809 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF18 5 171419656 171457623 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF19 11 69698232 69704642 FALSE 795 1.97939544348603 113 69641322 70088057 0.593481580287395 17 NA 0.593481580287395 17 NA 446735 NA 6 8 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF2 4 122826708 122898236 FALSE 353 1.86275900482518 109 122742269 122898253 0.593481580287395 15 NA 0.593481580287395 15 NA 155984 NA 3 25 10 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF20 8 16992169 17002181 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF21 19 48755559 48758333 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF22 19 639879 644371 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF23 12 4368227 4379728 FALSE 832 2.16514917403125 118 4269876 4445774 0.593481580287395 19 NA 0.593481580287395 19 NA 175898 NA 5 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF3 11 69809969 69819024 FALSE 795 1.97939544348603 113 69641322 70088057 0.593481580287395 17 NA 0.593481580287395 17 NA 446735 NA 6 6 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF4 11 69771016 69775403 FALSE 795 1.97939544348603 113 69641322 70088057 0.593481580287395 17 NA 0.593481580287395 17 NA 446735 NA 6 14 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF5 4 80266599 80336680 FALSE 343 1.48930536354655 98 80201895 80290351 0.593481580287395 12 NA 0.593481580287395 12 NA 88456 NA 2 20 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF6 12 4428155 4445614 FALSE 832 2.16514917403125 118 4269876 4445774 0.593481580287395 19 NA 0.593481580287395 19 NA 175898 NA 5 5 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF7 15 49423096 49488775 FALSE 1027 2.72878621176756 127 49423367 49508197 0.593481580287395 29 NA 0.593481580287395 29 NA 84830 NA 2 24 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF8 10 101770130 101780369 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGF9 13 21671383 21704498 FALSE 935 1.86961743092145 109 21671201 21704380 0.593481580287395 16 NA 0.593481580287395 16 NA 33179 NA 1 18 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFBP1 4 15935569 15938740 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFBP2 4 15960243 15969309 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFBP3 10 91906589 91909483 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFR1 8 38400215 38468834 FALSE 606 0.283910724486734 67 38270686 38427654 0.593443012170704 4 NA 0.593443012170704 4 NA 156968 NA 4 170 22 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFR1OP 6 166999182 167094789 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFR1OP2 12 26938383 26966650 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFR2 10 121478334 121598458 FALSE 747 1.49472284076057 96 121473390 121588798 0.593481580287395 12 4 0.593481580287395 12 4 115408 8 1 166 32 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFR3 4 1793293 1808872 FALSE 323 1.32033753917286 90 1788413 1808596 0.593481580287395 10 NA 0.593481580287395 10 NA 20183 NA 1 31 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFR4 5 177086886 177098144 FALSE 417 0.692426231476212 77 177081958 177292535 0.593481580287395 6 NA 0.593481580287395 6 NA 210577 NA 2 22 3 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGFRL1 4 1009936 1026897 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGG 4 154604134 154612967 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGGY 1 59296638 59810647 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGL1 8 17864380 17910365 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGL2 7 77193371 77199848 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FGR 1 27612064 27635277 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FH 1 241497603 241519761 TRUE 101 1.2159983807648 87 241497755 241524869 0.593481580287395 9 NA 0.593481580287395 9 NA 27114 NA 1 24 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHAD1 1 15247272 15400283 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 31 7 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHDC1 4 152936352 152979696 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHIT 3 59749310 61251459 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 5 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHL1 23 136146702 136211359 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHL2 2 105357712 105438513 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHL3 1 37996770 38005606 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHL5 6 96562548 96616636 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHOD1 16 67229387 67247658 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FHOD3 18 36297714 36780055 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 36 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIBCD1 9 130902438 130939286 FALSE 698 -0.692803749032214 25 130893485 131120247 0.276933305076759 1 0 0.276933305076759 1 0 226762 1 4 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIBIN 11 26994184 26996121 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIBP 11 65883741 65888539 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FICD 12 108515185 108525837 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIG4 6 109691312 109825428 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 23 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIGLA 2 70777310 70790643 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIGN 2 163593396 163736012 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIGNL1 7 50444128 50542535 FALSE 532 1.65375894783798 100 50304209 50447229 0.593481580287395 13 NA 0.593481580287395 13 NA 143020 NA 2 21 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIGNL2 12 51817840 51848766 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FILIP1 6 75291859 75493738 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FILIP1L 3 99830141 100114513 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIP1L1 4 53377643 53460861 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIS1 7 101239458 101252316 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FITM1 14 24131275 24132849 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FITM2 20 44302838 44311169 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FIZ1 19 55591371 55601970 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FJX1 11 35618419 35620868 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP10 17 41812680 41823217 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP11 12 48921518 48926474 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP14 7 30010587 30026684 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP15 9 113161006 113221361 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 32 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP1A 20 1368978 1393172 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP1B 2 24049701 24063681 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP2 11 64241003 64244132 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP3 14 45115600 45135319 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP4 12 2794953 2805423 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP5 6 35573585 35728583 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP6 7 73328164 73358637 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP7 2 178463664 178478600 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP8 19 18531751 18544077 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBP9 7 32957404 33006931 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKBPL 6 32128707 32130291 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKRP 19 46746046 46776988 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FKTN 9 105558130 105641118 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLAD1 1 154983338 154993111 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLCN 17 17212212 17237188 TRUE 1155 1.25952133768698 89 17207233 17242200 0.593481580287395 10 NA 0.593481580287395 10 NA 34967 NA 3 29 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLG 1 152302175 152325203 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 46 16 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLG2 1 152348735 152360006 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 29 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLI1 11 128686535 128813267 FALSE 822 1.72197466169248 103 128458828 128840198 0.593481580287395 14 NA 0.593481580287395 14 NA 381370 NA 3 23 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLII 17 18244836 18258916 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLNA 23 154348524 154374638 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 52 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLNB 3 58008400 58172251 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 57 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLNC 7 128830377 128859274 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 55 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLOT1 6 30727709 30742733 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLOT2 17 28879335 28897679 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLRT1 11 64103188 64119173 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 8 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLRT2 14 85530144 85654426 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLRT3 20 14322988 14337616 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLT1 13 28300344 28495145 FALSE 940 1.44269757758277 95 28300552 28495123 0.593481580287395 11 NA 0.593481580287395 11 NA 194571 NA 1 61 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLT3 13 28003274 28100592 FALSE 938 0.533954019089127 71 27998331 28100491 0.593481580287395 5 NA 0.593481580287395 5 NA 102160 NA 1 32 11 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLT3LG 19 49474207 49486231 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLT4 5 180601506 180649624 FALSE 422 0.877213898162749 80 180601633 180739499 0.593481580287395 7 NA 0.593481580287395 7 NA 137866 NA 2 40 8 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLVCR1 1 212858255 212899363 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLVCR2 14 75578617 75663214 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLYWCH1 16 2911937 2951208 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FLYWCH2 16 2883186 2899382 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMC1 7 139339457 139346319 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMN1 15 32765545 33194733 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 34 6 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMN2 1 240014348 240475189 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 32 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMNL1 17 45221444 45247320 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 27 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMNL2 2 152335237 152649834 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 27 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMNL3 12 49636499 49708165 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 39 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMO1 1 171248471 171285978 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMO2 1 171185208 171211230 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMO3 1 171090877 171117819 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMO4 1 171314208 171342084 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMO5 1 147175351 147243050 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMOD 1 203340628 203351758 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMR1 23 147911951 147951125 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FMR1NB 23 147981329 148026667 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FN1 2 215360440 215436172 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 53 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FN3K 17 82735575 82751197 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FN3KRP 17 82716683 82730328 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNBP1 9 129887187 130043194 FALSE 695 -0.751937959899922 18 129829569 130284582 0.387809979850725 1 0 0.387809979850725 1 0 455013 1 6 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNBP1L 1 93448131 93554661 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNBP4 11 47716517 47767443 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC1 6 159169397 159272109 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 33 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC10 1 1598012 1600096 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC11 20 63547891 63556708 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC3A 13 48975912 49209779 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC3B 3 172039628 172401665 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC4 2 27491883 27495245 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC5 1 32862268 32872482 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC7 1 108712657 108742740 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC8 17 35121579 35130732 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNDC9 5 157341600 157345721 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNIP1 5 131641714 131797063 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 23 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNIP2 4 158769138 158908049 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNTA 8 43034194 43085788 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FNTB 14 64986720 65062652 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 19 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FO393400.1 20 32632183 32743567 FALSE 1373 0.921004845427493 81 32358286 32833703 0.593481580287395 7 NA 0.593481580287395 7 NA 475417 NA 7 11 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOCAD 9 20658309 20995955 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 45 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOLH1 11 49146635 49208670 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 21 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOLR1 11 72189558 72196323 FALSE 798 1.57884388922101 98 72189737 72221716 0.593481580287395 12 NA 0.593481580287395 12 NA 31979 NA 2 9 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOLR2 11 72216601 72221950 FALSE 798 1.57884388922101 98 72189737 72221716 0.593481580287395 12 NA 0.593481580287395 12 NA 31979 NA 2 5 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOLR3 11 72114869 72139892 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOPNL 16 15865720 15888625 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOS 14 75278774 75282230 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOSB 19 45467995 45475179 FALSE 1348 0.0505055964886688 60 45373781 45485732 0.593443012170704 3 NA 0.593443012170704 3 NA 111951 NA 5 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOSL1 11 65892049 65900573 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOSL2 2 28392448 28417312 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXA1 14 37589984 37596059 TRUE 975 2.69130011330302 126 37584612 37595330 0.593481580287395 29 NA 0.593481580287395 29 NA 10718 NA 1 15 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXA2 20 22581005 22585455 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXA3 19 45863989 45873797 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXB1 15 60004222 60061730 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXB2 9 77019655 77020953 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXC1 6 1609972 1613897 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXC2 16 86566829 86569728 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD1 5 73444827 73448527 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD2 1 47436017 47440691 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD3 1 63323041 63325126 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD4 9 116231 118204 FALSE 641 -0.549545230300705 31 14889 175747 NA 2 NA NA 2 NA 160858 NA 3 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD4L1 2 113498665 113501155 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD4L3 9 68302867 68304905 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD4L4 9 65736555 65738784 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 2 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD4L5 9 65282101 65285209 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXD4L6 9 41126430 41128463 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXE1 9 97853254 97856715 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXE3 1 47416072 47418052 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXF1 16 86510527 86515418 TRUE 1124 2.0194115355855 113 85899172 86510878 0.593481580287395 17 NA 0.593481580287395 17 NA 611706 NA 2 5 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXF2 6 1389576 1395603 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXG1 14 28760330 28770277 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXH1 8 144473412 144476335 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXI1 5 170105897 170109725 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXI2 10 127737235 127741186 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXI3 2 88446787 88452656 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXJ1 17 76136333 76141299 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXJ2 12 8032703 8055503 FALSE 842 -0.749785793032381 18 7924480 8175292 0.387809979850725 1 0 0.387809979850725 1 0 250812 1 7 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXJ3 1 42176539 42335877 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXK1 7 4682309 4771443 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXK2 17 82519713 82644662 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXL1 16 86576368 86582160 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXL2 3 138944224 138947140 TRUE 290 0.492429452862148 71 138633043 139347013 0.593481580287395 5 NA 0.593481580287395 5 NA 713970 NA 8 10 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXL2NB 3 138947234 138953451 FALSE 290 0.492429452862148 71 138633043 139347013 0.593481580287395 5 NA 0.593481580287395 5 NA 713970 NA 8 7 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXM1 12 2857681 2877155 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXN1 17 28506243 28538896 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXN2 2 48314637 48379294 FALSE 136 -0.842193967001169 15 48346226 48725689 0.449390955025597 1 0 0.449390955025597 1 0 379463 1 7 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXN3 14 89124871 89619149 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXN4 12 109277979 109309220 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXO1 13 40469953 40666597 TRUE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 36 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXO3 6 108559835 108684774 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXO4 23 71096197 71103535 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXO6 1 41361922 41383590 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXP1 3 70952817 71583993 TRUE 266 1.13300035445803 84 69734550 71589030 0.593481580287395 9 NA 0.593481580287395 9 NA 1854480 NA 4 65 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXP2 7 114086327 114693772 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXP3 23 49250436 49264826 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXP4 6 41546426 41602384 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXQ1 6 1312440 1314748 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXR1 11 118971707 118981291 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXR2 23 55623400 55625325 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXRED1 11 126269055 126278131 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXRED2 22 36487190 36507101 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FOXS1 20 31844301 31845619 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FPGS 9 127794597 127814327 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FPGT 1 74198212 74234086 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 9 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FPGT-TNNI3K 1 74198235 74544393 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 35 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FPR1 19 51745172 51804110 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FPR2 19 51752026 51770526 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FPR3 19 51795163 51826189 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRA10AC1 10 93667883 93702572 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRAS1 4 78057570 78544269 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 82 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRAT1 10 97319267 97321915 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRAT2 10 97332497 97334709 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FREM1 9 14734666 14910995 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 44 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FREM2 13 38687129 38887131 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 49 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FREM3 4 143577302 143700675 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 27 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRG1 4 189940788 189963204 FALSE 365 -0.695790337132022 25 188002815 190026761 0.276933305076759 1 0 0.276933305076759 1 0 2023946 1 5 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRG2 4 190024351 190027257 FALSE 365 -0.695790337132022 25 188002815 190026761 0.276933305076759 1 0 0.276933305076759 1 0 2023946 1 5 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRG2B 10 133623895 133626795 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 5 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRG2C 3 75664330 75667220 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 5 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRK 6 115931149 116060758 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD1 6 168053166 168101511 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD3 9 83242990 83538546 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 20 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD4A 10 13643706 14462142 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD4B 3 69169990 69542583 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD5 15 43870761 44195252 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD6 14 51489100 51730727 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD7 23 132076993 132128020 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 16 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMD8 11 65386599 65413525 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMPD1 9 37651000 37746904 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMPD2 10 48153088 48274870 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMPD3 23 107522450 107605251 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRMPD4 23 12138466 12724523 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 26 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRRS1 1 99708632 99766631 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRRS1L 9 109130293 109167295 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRS2 12 69470349 69579789 FALSE 898 2.71670560587598 127 69470414 69585477 0.593481580287395 29 NA 0.593481580287395 29 NA 115063 NA 2 31 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRS3 6 41770176 41786542 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRY 13 31846713 32299122 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 67 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRYL 4 48497361 48780322 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 66 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FRZB 2 182833275 182867162 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSBP 8 94372170 94436952 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 19 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSCB 14 44504342 44507279 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSCN1 7 5592823 5606655 FALSE 519 -0.179912547532896 52 5563734 6005889 0.426118104232275 3 NA 0.426118104232275 3 NA 442155 NA 7 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSCN2 17 81528396 81537130 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSCN3 7 127591409 127602144 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSD1 19 4304600 4323843 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSD1L 9 105447796 105552433 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSD2 15 82755362 82806070 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSHB 11 30231016 30235261 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSHR 2 48962157 49154537 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSIP1 15 39588357 39782830 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSIP2 2 185738895 185833290 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 94 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FST 5 53480409 53487134 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSTL1 3 120392293 120451253 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSTL3 19 676365 683399 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSTL4 5 133196455 133612564 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FSTL5 4 161383897 162164035 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTCD 21 46136262 46155567 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTCDNL1 2 199760544 199851173 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTH1 11 61959718 61967660 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTHL17 23 31071241 31072053 FALSE 1462 -0.830640201023493 15 30653581 33339288 0.449390955025597 1 0 0.449390955025597 1 0 2685707 1 4 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTL 19 48965301 48966878 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTMT 5 121851955 121852833 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTO 16 53701692 54158512 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTSJ1 23 48476021 48486364 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FTSJ3 17 63819433 63830012 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 24 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUBP1 1 77944055 77979110 TRUE 29 1.9037198874889 111 77939067 77948648 0.593481580287395 16 NA 0.593481580287395 16 NA 9581 NA 2 41 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUBP3 9 130578965 130638352 FALSE 696 -0.58350626283648 28 130285267 130703742 NA 2 NA NA 2 NA 418475 NA 5 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUCA1 1 23845077 23868294 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUCA2 6 143494811 143511690 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUK 16 70454421 70480274 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUNDC1 23 44523639 44543001 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUNDC2 23 155025980 155060303 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUOM 10 133355154 133358035 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FURIN 15 90868592 90883458 FALSE 1056 0.0480309521361265 60 90717402 90913593 0.593443012170704 3 NA 0.593443012170704 3 NA 196191 NA 4 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUS 16 31180110 31194871 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT1 19 48748011 48755390 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT10 8 33370824 33473422 FALSE 600 -1.17029510777563 6 33372626 36935533 0.593443012170704 1 0 0.593443012170704 1 0 3562907 1 7 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT11 10 73772291 73780251 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT2 19 48695971 48705950 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT3 19 5842888 5851474 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT4 11 94543840 94549898 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT5 19 5865826 5870540 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT6 19 5830610 5839731 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT7 9 137030174 137033010 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT8 14 65410592 65744121 FALSE 980 1.77733587065212 105 65046836 65616281 0.593481580287395 15 NA 0.593481580287395 15 NA 569445 NA 4 12 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUT9 6 96015984 96215612 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FUZ 19 49806869 49817376 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXN 9 69035259 69120427 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXR1 3 180868141 180982753 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXR2 17 7591230 7614871 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD1 19 35138808 35143109 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD2 11 117800844 117828698 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD3 19 35115879 35124324 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD4 10 43371642 43376335 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD5 19 35154730 35169883 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD6 11 117836976 117877486 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD6-FXYD2 11 117820163 117876667 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FXYD7 19 35143250 35154301 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FYB1 5 39105255 39274528 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 23 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FYB2 1 56718804 56819696 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 23 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FYCO1 3 45917899 45995824 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 32 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FYN 6 111660332 111873452 FALSE 481 0.96234442455973 82 111660493 112071447 0.593481580287395 8 NA 0.593481580287395 8 NA 410954 NA 3 24 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FYTTD1 3 197737179 197787596 FALSE 321 -0.467968190041876 37 197514413 198169785 NA 2 NA NA 2 NA 655372 NA 7 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD1 7 91264364 91271326 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD10 12 130162459 130165740 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD2 17 44557459 44559570 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD3 8 28494205 28574268 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD4 11 86945679 86955391 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD5 2 207762586 207769563 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD6 8 103298433 103332866 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 10 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD7 2 202034587 202038445 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD8 10 35638249 35642278 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZD9 7 73433783 73436120 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 FZR1 19 3506273 3538330 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G0S2 1 209675420 209676388 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G2E3 14 30559123 30620063 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G3BP1 5 151771045 151812785 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G3BP2 4 75642782 75724525 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G6PC 17 42900797 42913369 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G6PC2 2 168901240 168910000 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 7 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G6PC3 17 44070735 44076344 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 G6PD 23 154531390 154547572 FALSE 1525 2.21894989166194 120 154517911 154547482 0.593481580287395 20 NA 0.593481580287395 20 NA 29571 NA 2 19 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAA 17 80101556 80119879 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 22 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAB1 4 143336762 143474568 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAB2 11 78215297 78418348 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAB3 23 154675249 154751583 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAB4 22 16961936 17008222 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABARAP 17 7240014 7242770 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABARAPL1 12 10212458 10223130 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABARAPL2 16 75566351 75577881 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABBR1 6 29555629 29633976 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 31 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABBR2 9 98288082 98709197 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 20 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABPA 21 25734570 25772460 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABPB1 15 50275392 50355408 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABPB2 1 151070578 151125542 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRA1 5 161847063 161899981 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRA2 4 46248427 46475230 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRA3 23 152166234 152451358 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRA4 4 46918900 46994407 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRA5 15 26866363 26949207 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRA6 5 161547063 161702593 FALSE 412 1.66196394451904 102 161685857 161702616 0.593481580287395 13 NA 0.593481580287395 13 NA 16759 NA 1 14 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRB1 4 46993723 47426444 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRB2 5 161288429 161549044 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRB3 15 26543546 26939539 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRD 1 2019298 2030758 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRE 23 151953124 151974680 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRG1 4 46035769 46124081 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRG2 5 162000057 162162977 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRG3 15 26971282 27541991 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRP 5 170763350 170814047 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRQ 23 152638183 152657534 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRR1 6 89177501 89231278 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRR2 6 89257208 89315299 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GABRR3 3 97986673 98035304 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAD1 2 170813213 170861151 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAD2 10 26216307 26304558 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GADD45A 1 67685061 67688338 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GADD45B 19 2476122 2478259 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GADD45G 9 89605013 89606555 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GADD45GIP1 19 12953119 12957236 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GADL1 3 30726200 30894765 FALSE 242 -1.01109204513629 11 30693664 31635954 0.593443012170704 1 0 0.593443012170704 1 0 942290 1 3 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE1 23 49589496 49608536 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE10 23 49303669 49319844 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE12D 23 49541767 49549094 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE12G 23 49570434 49577754 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE12J 23 49322057 49329384 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE13 23 49331616 49338952 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE2A 23 49589529 49596827 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAGE2E 23 49341192 49345922 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAK 4 849276 932373 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 32 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAL 11 68683779 68691175 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 5 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAL3ST1 22 30554635 30574587 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAL3ST2 2 241776825 241804208 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAL3ST3 11 66041952 66049180 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAL3ST4 7 100159244 100168750 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALC 14 87837820 87993665 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALE 1 23795599 23800804 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALK1 17 75751594 75765711 FALSE 1229 -0.166870124513272 52 75622079 75765208 0.426118104232275 3 NA 0.426118104232275 3 NA 143129 NA 7 23 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALK2 15 49155656 49367869 FALSE 1026 -0.585321086732959 28 48768195 49422724 NA 2 NA NA 2 NA 654529 NA 7 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALM 2 38665910 38741237 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNS 16 88813734 88856970 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT1 18 35581117 35711834 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT10 5 154190730 154420984 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT11 7 152025674 152122347 FALSE 577 -0.534124150715324 31 151557239 152129931 NA 2 NA NA 2 NA 572692 NA 3 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT12 9 98807699 98850081 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT13 2 153871913 154453849 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT14 2 30910467 31155202 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT15 3 16174649 16231992 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT16 14 69259277 69357033 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT17 7 71132169 71713600 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT18 11 11270876 11622005 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 16 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT2 1 230057990 230282124 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT3 2 165747591 165794682 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT4 12 89519408 89524806 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT5 2 157257598 157314211 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT6 12 51351247 51392867 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT7 4 173168753 173323967 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT8 12 4720341 4851927 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 20 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNT9 12 132196372 132329349 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNTL5 7 151956379 152019934 FALSE 577 -0.534124150715324 31 151557239 152129931 NA 2 NA NA 2 NA 572692 NA 3 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALNTL6 4 171812254 173041559 FALSE 360 -0.641187509684452 28 169424742 172229692 NA 2 NA NA 2 NA 2804950 NA 6 12 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALP 19 56176020 56185775 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALR1 18 77250549 77277896 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALR2 17 76074794 76077541 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALR3 22 37823382 37825495 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GALT 9 34638133 34651035 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAMT 19 1397026 1401570 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAN 16 81314947 81390884 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GANAB 11 62624826 62646726 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 25 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GANC 15 42273233 42356935 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 29 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAP43 3 115623324 115721490 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAPDH 12 6533927 6538374 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 8 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAPDHS 19 35533412 35545316 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAPT 5 58491435 58497090 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAPVD1 9 125261794 125367207 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 31 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAR1 4 109815510 109824740 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAREM1 18 32124877 32470484 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 32 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAREM2 2 26173091 26189663 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GARNL3 9 127224265 127393660 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GARS 7 30594681 30634033 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 18 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GART 21 33503931 33543491 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS1 9 86944363 86947189 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS2 11 22625509 22813055 FALSE 768 1.57260977131452 98 22622545 22685763 0.593481580287395 12 NA 0.593481580287395 12 NA 63218 NA 2 11 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS2L1 22 29306582 29312785 FALSE 1430 1.45955059636363 95 29268132 29308135 0.593481580287395 11 NA 0.593481580287395 11 NA 40003 NA 3 10 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS2L2 17 35744511 35752878 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS2L3 12 100573683 100628286 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS6 13 113820549 113864067 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS7 17 9910609 10198551 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAS8 16 90019629 90044975 FALSE 1132 -0.862602881667713 15 89949513 90075819 0.449390955025597 1 0 0.449390955025597 1 0 126306 1 5 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GAST 17 41712326 41715969 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATA1 23 48786554 48794311 FALSE 1477 1.98907325271654 113 48786629 48794285 0.593481580287395 17 NA 0.593481580287395 17 NA 7656 NA 1 10 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATA2 3 128479427 128493185 FALSE 282 1.46327503192174 95 128462806 128493188 0.593481580287395 11 NA 0.593481580287395 11 NA 30382 NA 2 25 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATA3 10 8045378 8075203 TRUE 709 1.28969372297857 90 8040486 8075228 0.593481580287395 10 NA 0.593481580287395 10 NA 34742 NA 1 26 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATA4 8 11676959 11760002 FALSE 585 1.99406996740312 113 11677061 11760048 0.593481580287395 17 NA 0.593481580287395 17 NA 82987 NA 1 21 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATA5 20 62463497 62475970 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATA6 18 22169443 22202528 FALSE 1245 2.21182455121432 120 22169605 22202537 0.593481580287395 20 NA 0.593481580287395 20 NA 32932 NA 1 19 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATAD1 7 92447448 92459432 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATAD2A 19 19385826 19508931 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATAD2B 1 153789030 153923360 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATB 4 151670504 151761023 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATC 12 120446438 120463749 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATD1 11 767220 777488 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GATM 15 45361124 45402327 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBA 1 155234452 155244699 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBA2 9 35736866 35749228 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBE1 3 81489699 81762161 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBF1 10 102245532 102382899 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 41 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBGT1 9 133152948 133163945 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBP1 1 89052319 89065360 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBP2 1 89106132 89150456 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBP3 1 89006666 89022894 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBP4 1 89181148 89198932 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 13 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBP5 1 89258950 89272804 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBP6 1 89364058 89386461 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBP7 1 89131751 89176040 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBX1 7 151148589 151174745 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GBX2 2 236165236 236168369 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GC 4 71741693 71804041 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCA 2 162318840 162371595 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCAT 22 37807905 37817176 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCC1 7 127580618 127593611 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 16 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCC2 2 108448561 108509415 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 33 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCDH 19 12891026 12914207 FALSE 1303 -0.374175356398884 41 12847883 12933687 NA 2 NA NA 2 NA 85804 NA 7 16 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCFC2 2 75652000 75710989 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 24 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCG 2 162142873 162152404 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCGR 17 81804132 81814013 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCH1 14 54842008 54902852 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCHFR 15 40764020 40767710 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCK 7 44144271 44198170 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCKR 2 27496842 27523684 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 19 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCLC 6 53497341 53616970 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCLM 1 93885205 93909456 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCM1 6 53126964 53148829 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCM2 6 10873223 10881941 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCN1 12 120127203 120194710 FALSE 922 -0.178359108690299 52 120108394 120164458 0.426118104232275 3 NA 0.426118104232275 3 NA 56064 NA 2 62 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCNA 23 71578411 71613583 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCNT1 9 76419850 76651203 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCNT2 6 10492223 10629368 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCNT3 15 59594875 59640239 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCNT4 5 75025346 75030899 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCNT7 20 56491492 56525925 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 12 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCOM1 15 57591908 57714745 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 20 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCSAM 3 112120841 112133305 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCSAML 1 247507058 247577690 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCSAML-AS1 1 247524679 247532613 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GCSH 16 81081938 81096425 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDA 9 72114595 72257193 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDAP1 8 74321130 74488872 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDAP1L1 20 44247099 44280917 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDAP2 1 117863485 117929630 FALSE 46 -0.673684454186075 25 117628427 119415546 0.276933305076759 1 0 0.276933305076759 1 0 1787119 1 7 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDE1 16 19501689 19522145 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF1 19 18868545 18896096 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 13 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF10 10 47300386 47313547 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF11 12 55743280 55757278 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF15 19 18374731 18389176 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF2 10 47322490 47326270 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF3 12 7689782 7695776 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF5 20 35433347 35454746 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF6 8 96142330 96160792 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF7 2 20666664 20679245 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDF9 5 132861181 132866884 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDI1 23 154436913 154443467 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDI2 10 5765223 5842132 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDNF 5 37812677 37839686 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDPD1 17 59220467 59275967 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDPD2 23 70423031 70433390 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 15 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDPD3 16 30104810 30113856 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDPD4 11 77216558 77301687 FALSE 803 -0.341739698901511 44 76796634 77285099 0.18904974046126 3 NA 0.18904974046126 3 NA 488465 NA 7 16 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDPD5 11 75434640 75525903 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GDPGP1 15 90233808 90245811 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEM 8 94249253 94262350 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEMIN2 14 39114223 39136973 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEMIN4 17 744414 753999 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 14 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEMIN5 5 154887416 154938209 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 30 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEMIN6 2 38751534 38785000 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEMIN7 19 45079195 45091524 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEMIN8 23 14008279 14029893 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GEN1 2 17753858 17788941 FALSE 113 -0.742826346277415 18 16552911 17753891 0.387809979850725 1 0 0.387809979850725 1 0 1200980 1 5 38 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GET4 7 876552 896436 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFAP 17 44903161 44916937 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 18 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFER 16 1984207 1987749 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFI1 1 92474762 92486876 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFI1B 9 132944000 132991687 FALSE 701 1.53365824072234 98 132891050 132987245 0.593481580287395 12 NA 0.593481580287395 12 NA 96195 NA 2 12 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFM1 3 158644278 158692575 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 25 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFM2 5 74721204 74767371 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFOD1 6 13357830 13487662 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFOD2 16 67674531 67719421 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFPT1 2 69319769 69387254 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFPT2 5 180300690 180353387 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFRA1 10 116056925 116273467 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFRA2 8 21690403 21812357 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFRA3 5 138252379 138274671 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFRA4 20 3659292 3663399 FALSE 1364 -0.857765548893226 15 3238102 3660233 0.449390955025597 1 0 0.449390955025597 1 0 422131 1 4 6 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFRAL 6 55327469 55402493 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GFY 19 49423749 49428818 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGA1 22 37608475 37633564 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGA2 16 23463542 23521995 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGA3 17 75236599 75262363 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 21 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGACT 13 100530164 100589528 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGCT 7 30496621 30504844 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGCX 2 85544723 85561547 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGH 8 63015079 63039171 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGN 19 38384265 38388082 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGNBP2 17 36544888 36589848 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGPS1 1 235327350 235344532 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGT1 22 24583750 24629005 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGT2 22 21207973 21227637 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGT5 22 24219654 24245142 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGT6 17 4556927 4560818 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGT7 20 34844720 34872860 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGTLC1 20 23985050 23988779 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGTLC2 22 22644475 22647903 FALSE 1421 1.2999135454728 90 22646437 22896109 0.593481580287395 10 NA 0.593481580287395 10 NA 249672 NA 2 5 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GGTLC3 22 18516344 18518161 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GH1 17 63917200 63918838 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 5 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GH2 17 63880215 63881935 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 6 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GHDC 17 42188799 42194532 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GHITM 10 84139440 84153245 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GHR 5 42423777 42721878 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GHRH 20 37251082 37261835 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GHRHR 7 30938669 30993254 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GHRL 3 10285675 10292947 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GHSR 3 172445133 172448456 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GID4 17 18039292 18068404 FALSE 1157 2.05223859005425 115 18039610 18068396 0.593481580287395 18 NA 0.593481580287395 18 NA 28786 NA 1 20 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GID8 20 62938119 62948475 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIF 11 59829268 59845501 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIGYF1 7 100679507 100694037 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 23 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIGYF2 2 232697299 232860575 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP1 7 150716557 150724284 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP1-GIMAP5 7 150716668 150743646 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 11 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP2 7 150685697 150693641 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP4 7 150567277 150573955 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP5 7 150722253 150750033 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 6 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP6 7 150625375 150632648 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP7 7 150514830 150521073 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMAP8 7 150450630 150479392 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIMD1 4 106357485 106368825 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIN1 5 103086000 103120151 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GINM1 6 149566294 149591748 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GINS1 20 25407727 25452628 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GINS2 16 85676198 85690073 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GINS3 16 58295080 58406144 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GINS4 8 41529206 41545046 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIP 17 48958554 48968596 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIPC1 19 14477760 14496149 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIPC2 1 77979542 78138449 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIPC3 19 3585553 3593541 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIPR 19 45668244 45683724 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIT1 17 29573469 29594054 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GIT2 12 109929792 109996389 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA1 6 121435577 121449727 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA10 6 89894469 89921760 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA3 13 20138255 20161049 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA4 1 34792998 34795747 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA5 1 147756199 147773362 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA8 1 147907956 147909257 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA9 1 38874451 38881587 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJA9-MYCBP 1 38864501 38881617 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJB1 23 71215194 71225516 FALSE 1492 1.41079831549961 93 71118808 71254970 0.593481580287395 11 NA 0.593481580287395 11 NA 136162 NA 4 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJB2 13 20187463 20193010 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJB3 1 34781189 34786369 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJB4 1 34759741 34763724 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJB5 1 34755047 34758512 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJB6 13 20221962 20232395 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJB7 6 87282978 87329278 FALSE 473 1.6409798023245 100 87152458 87284801 0.593481580287395 13 NA 0.593481580287395 13 NA 132343 NA 2 3 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJC1 17 44798448 44830816 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJC2 1 228149852 228159826 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJC3 7 99923269 99929620 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJD2 15 34751032 34754965 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJD3 17 40362931 40363815 FALSE 1180 0.92222723225404 81 40347989 40417892 0.593481580287395 7 NA 0.593481580287395 7 NA 69903 NA 3 3 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJD4 10 35605410 35608935 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GJE1 6 142133090 142135151 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GK 23 30653359 30731456 FALSE 1462 -0.830640201023493 15 30653581 33339288 0.449390955025597 1 0 0.449390955025597 1 0 2685707 1 4 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GK2 4 79406352 79408293 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GK5 3 142157527 142225607 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 16 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GKAP1 9 83739421 83829516 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GKN1 2 68974573 68980974 FALSE 147 0.867370345443778 80 68822478 69181822 0.593481580287395 7 NA 0.593481580287395 7 NA 359344 NA 5 6 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GKN2 2 68945232 68952970 FALSE 147 0.867370345443778 80 68822478 69181822 0.593481580287395 7 NA 0.593481580287395 7 NA 359344 NA 5 6 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLA 23 101397803 101408012 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLB1 3 32996608 33097230 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLB1L 2 219236606 219245478 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLB1L2 11 134331874 134378341 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 20 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLB1L3 11 134274245 134319564 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 20 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLCCI1 7 7968794 8094272 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLCE 15 69160584 69272217 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLDC 9 6532464 6645783 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 26 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLDN 15 51341629 51408013 FALSE 1029 2.47823443625181 123 51208297 51341670 0.593481580287395 24 NA 0.593481580287395 24 NA 133373 NA 2 12 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLE1 9 128504700 128542288 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLG1 16 74447427 74607144 FALSE 1118 0.382602050652098 68 74391834 74453215 0.389403197422789 6 NA 0.389403197422789 6 NA 61381 NA 3 29 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLI1 12 57460135 57472262 FALSE 889 1.19452668102255 87 57459909 57476074 0.593481580287395 9 NA 0.593481580287395 9 NA 16165 NA 3 19 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLI2 2 120735623 120992653 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLI3 7 41960950 42237870 FALSE 530 0.199103856425824 63 41690438 41966289 0.54220702508464 4 NA 0.54220702508464 4 NA 275851 NA 2 25 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLI4 8 143267433 143276931 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLIPR1 12 75480680 75503853 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLIPR1L1 12 75334639 75370560 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLIPR1L2 12 75391070 75432688 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLIPR2 9 36136536 36163913 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLIS1 1 53506237 53738106 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLIS2 16 4314761 4339597 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLIS3 9 3824127 4348392 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLMN 1 92246402 92298987 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLMP 1 156290089 156295689 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 9 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLO1 6 38675925 38703141 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLOD4 17 757097 783390 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLOD5 23 48761750 48773648 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLP1R 6 39048798 39087743 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLP2R 17 9822206 9892102 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRA1 5 151822513 151924842 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRA2 23 14529298 14731812 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRA3 4 174636914 174829314 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRA4 23 103707224 103728655 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRB 4 157076057 157172090 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRX 5 95751319 95823005 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRX2 1 193090866 193106114 FALSE 77 0.164394122642393 63 193069139 193236365 0.54220702508464 4 NA 0.54220702508464 4 NA 167226 NA 4 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRX3 10 130136399 130184521 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLRX5 14 95533503 95544724 FALSE 991 -0.518304757020061 34 95191561 95544037 NA 2 NA NA 2 NA 352476 NA 3 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLS 2 190880827 190965552 FALSE 197 -0.634190880282039 28 190057538 191008950 NA 2 NA NA 2 NA 951412 NA 9 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLS2 12 56470944 56488414 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLT1D1 12 128853427 128984968 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLT6D1 9 135623656 135639540 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLT8D1 3 52694488 52706032 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLT8D2 12 103988984 104064183 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLTP 12 109850943 109880488 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLTPD2 17 4788959 4790390 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLUD1 10 87050486 87094866 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLUD2 23 121047588 121050080 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLUL 1 182381704 182392206 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLYAT 11 58640426 58731974 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLYATL1 11 58905398 59043527 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLYATL1B 11 59086307 59094786 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLYATL2 11 58834065 58904215 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLYATL3 6 49499958 49527047 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLYCTK 3 52287089 52293476 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GLYR1 16 4803203 4847342 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GM2A 5 151212150 151270440 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMCL1 2 69829642 69881396 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMCL2 5 178184503 178187432 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 7 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMDS 6 1623806 2245692 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMEB1 1 28668732 28719353 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMEB2 20 63587602 63627041 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMFB 14 54474484 54489196 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMFG 19 39328353 39342372 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMIP 19 19629476 19643667 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GML 8 142834247 142916506 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 22 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMNC 3 190852877 190892429 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMNN 6 24774931 24786099 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMPPA 2 219498867 219506989 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMPPB 3 49716844 49723951 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMPR 6 16238580 16295549 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMPR2 14 24232422 24239242 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GMPS 3 155870536 155944026 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNA11 19 3094410 3124004 FALSE 1276 2.08202204263362 117 3094339 3150200 0.593481580287395 18 NA 0.593481580287395 18 NA 55861 NA 2 18 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNA12 7 2728112 2844324 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNA13 17 65010715 65056839 FALSE 1217 2.43087142828401 123 64896755 65056630 0.593481580287395 24 NA 0.593481580287395 24 NA 159875 NA 2 21 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNA14 9 77423079 77648307 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNA15 19 3136193 3163769 FALSE 1276 2.08202204263362 117 3094339 3150200 0.593481580287395 18 NA 0.593481580287395 18 NA 55861 NA 2 8 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAI1 7 79768028 80226181 FALSE 537 -0.268216004269263 46 80135271 80922339 0.261157737158964 3 NA 0.261157737158964 3 NA 787068 NA 4 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAI2 3 50226292 50259355 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAI3 1 109548611 109618321 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAL 18 11688956 11885685 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAO1 16 56191347 56357457 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 10 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAQ 9 77716087 78031458 FALSE 670 1.98311314631497 113 77716295 78031622 0.593481580287395 17 NA 0.593481580287395 17 NA 315327 NA 1 28 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAS 20 58839718 58911192 FALSE 1395 1.66665276830588 102 58839760 58911210 0.593481580287395 13 NA 0.593481580287395 13 NA 71450 NA 1 45 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAT1 3 50191612 50196516 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAT2 1 109603267 109619929 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAT3 7 80458671 80512020 FALSE 537 -0.268216004269263 46 80135271 80922339 0.261157737158964 3 NA 0.261157737158964 3 NA 787068 NA 4 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNAZ 22 23070361 23125037 FALSE 1422 -1.11892841169056 7 23059635 23161569 0.593443012170704 1 0 0.593443012170704 1 0 101934 1 3 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNB1 1 1785285 1891117 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNB1L 22 19783224 19854939 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNB2 7 100673531 100679174 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNB3 12 6839954 6847393 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNB4 3 179396089 179451590 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNB5 15 52115105 52191369 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNE 9 36214441 36277056 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG10 9 111661335 111670246 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG11 7 93921699 93928610 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG12 1 67701466 67833467 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG13 16 798041 800733 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG14 19 12687998 12688422 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG2 14 51826195 51979342 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG3 11 62707658 62709201 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG4 1 235547687 235650754 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG5 1 84498325 84506565 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG7 19 2511219 2702709 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNG8 19 46634076 46634685 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNGT1 7 93591573 93911265 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNGT2 17 49202791 49210574 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNL1 6 30541377 30557174 FALSE 441 1.85612175438588 109 30489582 30547266 0.593481580287395 15 NA 0.593481580287395 15 NA 57684 NA 2 15 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNL2 1 37566816 37595935 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNL3 3 52681156 52694492 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNL3L 23 54530211 54561071 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNLY 2 85685175 85698854 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNMT 6 42960758 42963880 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNPAT 1 231241207 231277973 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNPDA1 5 141991749 142013041 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNPDA2 4 44682200 44726595 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNPNAT1 14 52775194 52791668 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNPTAB 12 101745497 101830938 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNPTG 16 1351923 1364113 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNRH1 8 25419260 25424654 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNRH2 20 3043622 3045747 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 2 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNRHR 4 67739328 67754360 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GNS 12 64713445 64759447 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA1 9 124878357 124948492 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA2 9 128255829 128275995 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA3 12 132768909 132828858 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 31 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA4 3 37243177 37366751 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 42 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA5 14 92794231 92839963 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 14 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6A 15 74069857 74082550 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6B 15 72654738 72666394 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6C 15 75258599 75270199 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6D 15 75282835 75295807 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6L10 15 82339998 82349475 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6L2 15 23439498 23447234 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6L22 15 22458903 22469230 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6L4 15 84235773 84245368 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA6L6 15 20531856 20541800 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA7 8 41490396 41510980 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA7B 10 97850239 97871580 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8A 15 34379068 34437466 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8B 15 34525207 34588503 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 3 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8F 15 28378621 28392018 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 2 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8G 15 28519611 28533014 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8H 15 30604126 30614561 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8J 15 30083053 30093499 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8K 15 32392782 32403292 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8M 15 28701954 28738384 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8N 15 32593456 32607310 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8O 15 32445106 32455634 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8Q 15 30552078 30562501 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8R 15 30403740 30414162 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8S 15 23354748 23367231 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGA8T 15 30135149 30145567 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLGB1 3 121663199 121749767 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 48 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLIM4 3 168008677 168095975 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLM1 9 86026146 86100173 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLPH3 5 32124704 32174350 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLPH3L 1 150646225 150697144 FALSE 55 -0.603676872005541 28 150622798 150876627 NA 2 NA NA 2 NA 253829 NA 6 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLT1A 1 204198160 204214092 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOLT1B 12 21501781 21518408 FALSE 857 1.10800512088623 84 21464006 21506995 0.593481580287395 9 NA 0.593481580287395 9 NA 42989 NA 3 7 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GON4L 1 155749662 155859400 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 42 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GON7 14 93202894 93207094 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOPC 6 117560269 117602542 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GORAB 1 170532129 170553446 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GORASP1 3 39096659 39108363 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GORASP2 2 170928464 170967129 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOSR1 17 30477362 30527592 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOSR2 17 46923075 46975524 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOT1 10 99396870 99431569 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOT1L1 8 37934281 37940129 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GOT2 16 58707131 58734357 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GP1BA 17 4932297 4935030 FALSE 1140 -0.117427632115161 54 4890662 4939168 0.569455701337318 3 NA 0.569455701337318 3 NA 48506 NA 5 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GP1BB 22 19722945 19724771 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GP2 16 20309572 20327808 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GP5 3 194394821 194398354 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GP6 19 55013705 55038264 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GP9 3 129060767 129062406 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPA33 1 167052836 167166479 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 24 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPAA1 8 144082590 144086216 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPALPP1 13 44989529 45037669 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPAM 10 112149864 112215377 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 21 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPANK1 6 31661229 31666283 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPAT2 2 96021946 96039451 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPAT3 4 83535914 83605875 FALSE 345 0.496323235674968 71 83459740 83588265 0.593481580287395 5 NA 0.593481580287395 5 NA 128525 NA 3 13 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPAT4 8 41577187 41625001 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPATCH1 19 33080880 33130542 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPATCH11 2 37084451 37099244 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPATCH2 1 217426992 217631082 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPATCH2L 14 76151916 76254342 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPATCH3 1 26890488 26900466 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPATCH4 1 156594487 156601496 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPATCH8 17 44395284 44503430 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 22 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPBAR1 2 218259496 218263859 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPBP1 5 57173948 57264679 FALSE 378 -0.616076199226728 28 56909685 57262664 NA 2 NA NA 2 NA 352979 NA 3 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPBP1L1 1 45627304 45688113 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPC1 2 240435671 240468078 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPC2 7 100169606 100177372 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 13 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPC3 23 133535745 133985895 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPC4 23 133300103 133415490 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 10 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPC5 13 91398607 92873682 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 10 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPC6 13 93226842 94407401 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPCPD1 20 5544404 5611026 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPD1 12 50103819 50111319 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPD1L 3 32105689 32168713 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPD2 2 156435290 156613735 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPER1 7 1082208 1093815 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPHA2 11 64934471 64935888 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPHB5 14 63312835 63318879 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPHN 14 66507407 67181803 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPI 19 34359480 34402413 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPIHBP1 8 143213193 143217170 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPKOW 23 49113389 49123801 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPLD1 6 24424565 24495205 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPM6A 4 175632934 176002664 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPM6B 23 13771031 13938638 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPN1 2 27628247 27651508 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPN2 1 26876133 26890297 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPN3 12 110452484 110469268 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPNMB 7 23235967 23275108 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR1 2 206175316 206218047 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR101 23 137030148 137031674 FALSE 1519 0.0708401583431336 60 136780801 138711057 0.593443012170704 3 NA 0.593443012170704 3 NA 1930256 NA 5 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR107 9 130053426 130140169 FALSE 695 -0.751937959899922 18 129829569 130284582 0.387809979850725 1 0 0.387809979850725 1 0 455013 1 6 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR108 19 6729914 6737603 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 17 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR119 23 130384440 130385447 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR12 13 26755200 26760785 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR132 14 105049389 105065445 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR135 14 59429022 59465342 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR137 11 64270062 64289500 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR137B 1 236142505 236221865 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 10 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR137C 14 52553148 52637713 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR139 16 20031485 20073917 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR141 7 37683796 37833788 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR142 17 74367407 74372622 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR143 23 9725346 9786297 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR146 7 1044576 1059261 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR148 2 130729070 130730336 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR149 3 154337672 154429715 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR15 3 98531899 98533150 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR150 5 95620078 95622142 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR151 5 146513103 146516190 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR152 11 67451301 67452729 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR153 1 6247346 6260975 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR155 2 174431571 174487094 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 18 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR156 3 120164645 120285094 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR157 1 9100305 9129170 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR158 10 25174802 25602226 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR160 3 170037929 170085403 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR161 1 168079543 168137667 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR162 12 6821545 6829972 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR17 2 127645864 127652639 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR171 3 151197832 151203201 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR173 23 53049091 53080615 FALSE 1481 0.620493498053204 75 52862624 53235137 0.593481580287395 6 NA 0.593481580287395 6 NA 372513 NA 8 5 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR174 23 79144663 79175315 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR176 15 39799032 39920892 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR179 17 38325530 38343847 FALSE 1169 -0.0156695342147194 56 38320793 38335134 0.593443012170704 3 NA 0.593443012170704 3 NA 14341 NA 2 34 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR18 13 99254714 99261744 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR180 13 94601903 94634645 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR182 12 56994446 56998441 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR183 13 99294530 99307405 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR19 12 12660891 12696207 FALSE 852 -0.515807943708335 34 12079259 12714091 NA 2 NA NA 2 NA 634832 NA 7 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR20 8 141356500 141367267 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR21 9 123034527 123035696 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR22 7 107470018 107475659 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR25 1 200872955 200874178 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR26 10 123666355 123694607 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR27 3 71754050 71756496 FALSE 267 -0.951688570929534 11 71684747 71785028 0.593443012170704 1 0 0.593443012170704 1 0 100281 1 4 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR3 1 27392644 27395814 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR31 6 167156271 167158329 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR32 19 50770464 50771732 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR33 14 31482875 31488142 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR34 23 41688973 41697277 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR35 2 240605431 240631259 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR37 7 124745997 124765627 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR37L1 1 202122858 202133592 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR39 2 132416574 132646559 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR4 19 45589764 45602208 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR42 19 35370929 35372962 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR45 2 105241743 105243049 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR50 23 151176653 151181465 FALSE 1522 -0.468653153264543 37 150592603 151672444 NA 2 NA NA 2 NA 1079841 NA 7 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR52 1 174448111 174449198 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR55 2 230907318 230961066 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR6 6 109978256 109980718 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR61 1 109539872 109548406 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR62 3 51955314 51957504 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR63 6 96794126 96837463 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR65 14 88005124 88014811 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR68 14 91232532 91253925 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR75 2 53852913 53859989 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR75-ASB3 2 53670293 53860160 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 36 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR78 4 8558725 8619761 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 21 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR82 23 41724155 41730135 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR83 11 94377311 94401419 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR84 12 54362445 54364487 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR85 7 113078331 113087778 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR87 3 151294086 151316952 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR88 1 100538137 100542018 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR89A 1 145607990 145670648 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPR89B 1 147928393 147993521 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRASP1 23 102651366 102659083 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRASP2 23 102712176 102717733 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRC5A 12 12890782 12917937 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRC5B 16 19856691 19886167 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRC5C 17 74424851 74451653 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRC5D 12 12940775 12952147 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRC6A 6 116792085 116829037 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 15 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRIN1 5 176595802 176610133 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRIN2 10 46549044 46555530 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 5 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPRIN3 4 89236386 89308010 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPS1 17 82050691 82057470 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPS2 17 7311324 7315564 TRUE 1142 0.21076670068814 64 7307353 7324199 0.593443012170704 4 NA 0.593443012170704 4 NA 16846 NA 4 14 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPSM1 9 136327476 136359605 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPSM2 1 108875350 108934545 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPSM3 6 32190766 32195523 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 8 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPT 8 144502973 144507174 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPT2 16 46884378 46931297 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPX2 14 64939152 64942905 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPX3 5 151020438 151028993 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPX4 19 1103926 1106791 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPX5 6 28525925 28534952 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPX6 6 28503296 28528215 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPX7 1 52602372 52609051 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GPX8 5 55160118 55167071 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAMD1A 19 34994784 35026471 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAMD1B 11 123358428 123627774 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 25 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAMD1C 3 113828182 113947174 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAMD2A 15 72159807 72197785 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAMD2B 5 126360132 126496494 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAMD4 22 46576012 46679790 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAP 17 19020673 19047637 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRAP2 22 39901082 39973721 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRASP 12 52006940 52015889 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRB10 7 50590063 50793462 FALSE 533 -0.636373738560084 28 50463408 55129820 NA 2 NA NA 2 NA 4666412 NA 8 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRB14 2 164492812 164621848 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRB2 17 75318076 75405709 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRB7 17 39737927 39747291 FALSE 1175 -0.421258798391822 37 39729709 39746765 NA 2 NA NA 2 NA 17056 NA 3 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GREB1 2 11482341 11642788 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 39 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GREB1L 18 21242242 21525417 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 35 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GREM1 15 32717974 32745107 FALSE 1004 2.96046388874178 132 32718052 32745061 0.593481580287395 35 NA 0.593481580287395 35 NA 27009 NA 1 46 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GREM2 1 240489573 240612149 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRHL1 2 9951693 10002277 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 17 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRHL2 8 101492432 101669726 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRHL3 1 24319322 24364482 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRHPR 9 37422666 37436990 FALSE 667 0.255877631246137 64 36843439 37441653 0.593443012170704 4 NA 0.593443012170704 4 NA 598214 NA 4 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIA1 5 153489615 153813869 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 23 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIA2 4 157204182 157366075 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIA3 23 123184153 123490915 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIA4 11 105609994 105982092 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRID1 10 85599555 86366493 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 20 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRID2 4 92303622 93810157 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 19 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRID2IP 7 6497462 6551436 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 26 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIFIN 7 2474844 2476894 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIK1 21 29536933 29940033 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIK2 6 101181257 102070083 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIK3 1 36795527 37034129 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIK4 11 120511700 120988904 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 21 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIK5 19 41998321 42069498 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIN1 9 137138390 137168762 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIN2A 16 9753404 10182754 TRUE 1084 2.17925129876523 118 9748426 10431119 0.593481580287395 20 NA 0.593481580287395 20 NA 682693 NA 2 75 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIN2B 12 13437942 13981957 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIN2C 17 74842023 74861504 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 20 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIN2D 19 48394875 48444931 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIN3A 9 101569353 101738580 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 20 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIN3B 19 1000419 1009732 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 17 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRINA 8 143990058 143993415 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIP1 12 66347431 67069162 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIP2 3 14489111 14556075 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 26 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRIPAP1 23 48973720 49002264 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 24 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRK1 13 113667155 113737735 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRK2 11 67266410 67286556 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRK3 22 25564849 25729294 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRK4 4 2963608 3040747 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRK5 10 119207589 119459742 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRK6 5 177403204 177442901 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 30 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRK7 3 141778148 141818490 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM1 6 146027646 146437598 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM2 3 51707070 51718613 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM3 7 86643914 86864884 FALSE 540 2.07770828746275 117 86644072 86897476 0.593481580287395 18 NA 0.593481580287395 18 NA 253404 NA 2 19 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM4 6 34018645 34155622 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM5 11 88504576 89065945 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM6 5 178977587 178996206 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM7 3 6770001 7741533 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRM8 7 126438598 127253294 FALSE 559 1.33033924388814 90 124822369 126439090 0.593481580287395 10 NA 0.593481580287395 10 NA 1616721 NA 2 15 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRN 17 44345086 44353102 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRP 18 59220168 59230774 FALSE 1261 -0.626771039159971 28 58934445 59897059 NA 2 NA NA 2 NA 962614 NA 7 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRPEL1 4 7058906 7068197 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRPEL2 5 149345430 149354583 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRPR 23 16123556 16153021 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRSF1 4 70815782 70839945 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRTP1 13 113324164 113364148 FALSE 960 0.280824540945925 67 113297479 113407354 0.593443012170704 4 NA 0.593443012170704 4 NA 109875 NA 3 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRWD1 19 48445773 48457022 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRXCR1 4 42893267 43030658 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GRXCR2 5 145858521 145937126 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSAP 7 77310751 77416400 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 31 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSC 14 94768216 94770230 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSC2 22 19148576 19150283 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSDMA 17 39953263 39977766 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 13 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSDMB 17 39904595 39919854 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSDMC 8 129748196 129786888 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSDMD 8 143553207 143563062 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 10 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSDME 7 24698351 24758113 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSE1 16 85169525 85676204 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSG1 12 13083560 13103683 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSG1L 16 27787535 28063509 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSG1L2 17 9802386 9822071 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSK3A 19 42230186 42242625 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSK3B 3 119821323 120094417 FALSE 278 1.71097613173327 103 119821460 120095005 0.593481580287395 14 NA 0.593481580287395 14 NA 273545 NA 1 37 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSKIP 14 96363452 96387288 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSN 9 121207794 121332843 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSPT1 16 11868128 11916082 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSPT2 23 51743431 51746232 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSR 8 30678061 30727999 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSS 20 34928433 34956027 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTA1 6 52791664 52803910 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTA2 6 52750089 52763569 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTA3 6 52896639 52909685 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTA4 6 52977948 52995378 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTA5 6 52831655 52846095 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTCD 4 105708778 105847728 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTK1 7 143244093 143270854 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTM1 1 109687814 109709039 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTM2 1 109668022 109709551 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTM3 1 109733932 109741038 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTM4 1 109656081 109674836 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTM5 1 109711780 109775428 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 34 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTO1 10 104235356 104267459 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTO2 10 104268873 104304945 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTP1 11 67583595 67586656 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 7 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTT2B 22 23957414 23961186 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTT4 22 23998401 24005453 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 5 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSTZ1 14 77320884 77331597 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSX1 13 27792643 27794768 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GSX2 4 54099523 54102505 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTDC1 2 143938068 144332568 FALSE 177 -0.992611125625102 11 142885392 144208701 0.593443012170704 1 0 0.593443012170704 1 0 1323309 1 3 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2A1 14 81175452 81221377 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2A1L 2 48617798 48733148 FALSE 136 -0.842193967001169 15 48346226 48725689 0.449390955025597 1 0 0.449390955025597 1 0 379463 1 7 26 4 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2A2 15 59638062 59657541 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2B 1 88852932 88891944 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2E1 3 120742637 120783069 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2E2 8 30578318 30658251 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2F1 19 6379569 6393981 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2F2 13 45120515 45284909 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2H1 11 18322295 18367044 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2H2 5 71032670 71067689 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2H2C 5 69560208 69594723 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2H3 12 123633739 123662606 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2H4 6 30908184 30914106 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2H5 6 158168350 158199344 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2I 7 74657667 74760692 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2IRD1 7 74453790 74602604 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2IRD2 7 74796144 74851551 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF2IRD2B 7 75092573 75149817 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF3A 13 27424544 27435823 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF3C1 16 27459555 27549913 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 45 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF3C2 2 27325849 27357034 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 23 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF3C3 2 196763032 196799725 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF3C4 9 132670035 132694955 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF3C5 9 133030675 133058503 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTF3C6 6 110958560 110967890 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTPBP1 22 38705723 38738299 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTPBP10 7 90335223 90391455 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 11 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTPBP2 6 43605316 43629162 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTPBP3 19 17334920 17342735 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTPBP4 10 988019 1019936 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 19 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTPBP8 3 112990918 113015060 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTSE1 22 46296741 46330810 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTSF1 12 54455950 54473602 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GTSF1L 20 43726164 43726998 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCA1A 6 42155406 42180056 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCA1B 6 42184401 42194916 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCA1C 3 108907792 108953895 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCA2A 1 42162691 42164718 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCA2B 1 42153421 42155824 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCD1 22 24540423 24555935 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCY1A1 4 155666711 155732349 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCY1A2 11 106674012 107018524 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCY1B1 4 155758992 155807591 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCY2C 12 14612632 14696585 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCY2D 17 8002594 8020339 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 21 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUCY2F 23 109372906 109482072 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 23 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUF1 4 44678427 44700926 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUK1 1 228139962 228148984 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GULP1 2 188291669 188595931 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GUSB 7 65960684 65982314 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GVQW2 6 138725211 138773652 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 2 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GVQW3 11 76381313 76414619 FALSE 800 -0.534359574257993 31 75796365 76445038 NA 2 NA NA 2 NA 648673 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GXYLT1 12 42081845 42144879 FALSE 866 -0.81872346908015 14 40514460 42098021 0.593443012170704 1 0 0.593443012170704 1 0 1583561 1 4 8 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GXYLT2 3 72888073 72998138 FALSE 269 0.192912274836072 63 72385023 72888319 0.54220702508464 4 NA 0.54220702508464 4 NA 503296 NA 3 8 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYG1 3 148991341 149027668 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYG2 23 2828788 2882820 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYPA 4 144109303 144140786 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYPB 4 143996104 144019345 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYPC 2 126655933 126696670 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYPE 4 143870867 143905563 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYS1 19 48968125 48993310 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GYS2 12 21536189 21604847 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GZF1 20 23362182 23373063 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 11 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GZMA 5 55102648 55110252 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GZMB 14 24630954 24634267 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GZMH 14 24606480 24609699 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GZMK 5 55024253 55034570 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 GZMM 19 544034 549924 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H1F0 22 37805093 37807436 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H1FNT 12 48328980 48330279 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H1FOO 3 129543214 129551467 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H1FX 3 129314771 129316277 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2AFB1 23 154884972 154885558 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2AFJ 12 14774383 14778002 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2AFV 7 44826791 44848083 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2AFX 11 119093854 119095467 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2AFY 5 135333900 135399914 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2AFY2 10 70052796 70112280 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2AFZ 4 99948086 99950388 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2BFM 23 104039949 104042454 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2BFS 21 5972924 43565648 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 1821 145 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H2BFWT 23 104011147 104013687 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H3.Y 5 17654870 17655847 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H3F3A 1 226061851 226072001 FALSE 92 1.48771424914111 98 226062747 226146719 0.593481580287395 12 NA 0.593481580287395 12 NA 83972 NA 2 14 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H3F3B 17 75776434 75785893 FALSE 1230 2.52665857571202 124 75776558 75779799 0.593481580287395 25 NA 0.593481580287395 25 NA 3241 NA 1 14 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H3F3C 12 31791185 31792241 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 5 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 H6PD 1 9234775 9271337 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAAO 2 42767089 42792593 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HABP2 10 113550837 113589602 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HABP4 9 96450201 96491336 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HACD1 10 17589032 17617377 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HACD2 3 123490820 123585185 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HACD3 15 65530418 65578352 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HACD4 9 20999515 21031636 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HACE1 6 104728093 104859919 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 25 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HACL1 3 15560704 15601852 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HADH 4 107989714 108035175 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HADHA 2 26190635 26244726 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HADHB 2 26243170 26290468 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAGH 16 1795620 1827194 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 9 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAGHL 16 726936 735525 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAL 12 95972662 95996365 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAMP 19 35280716 35285143 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAND1 5 154474972 154478264 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAND2 4 173524969 173530229 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAO1 20 7882981 7940474 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAO2 1 119368779 119394130 FALSE 46 -0.673684454186075 25 117628427 119415546 0.276933305076759 1 0 0.276933305076759 1 0 1787119 1 7 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAP1 17 41717742 41734644 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAPLN1 5 83637805 83721613 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAPLN2 1 156619294 156625725 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAPLN3 15 88877288 88895626 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 8 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAPLN4 19 19255641 19262796 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HARBI1 11 46602861 46617909 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HARS 5 140673904 140691862 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HARS2 5 140691426 140699318 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAS1 19 51713112 51723994 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAS2 8 121612116 121641390 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAS3 16 69105564 69118719 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HASPIN 17 3723903 3726699 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAT1 2 171922448 171983682 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS1 18 46104332 46128333 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS2 15 42548810 42569994 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS3 4 2227464 2242164 FALSE 326 -0.697910858685582 25 1983477 2331072 0.276933305076759 1 0 0.276933305076759 1 0 347595 1 7 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS4 14 22946228 22957161 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS5 19 35612744 35625349 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS6 9 19053143 19103119 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS7 23 153447666 153495516 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 11 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAUS8 19 17049729 17075625 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAVCR1 5 157029413 157059119 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 11 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAVCR2 5 157085832 157142869 FALSE 409 1.73900480880178 103 157085921 157109237 0.593481580287395 14 NA 0.593481580287395 14 NA 23316 NA 1 19 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HAX1 1 154272511 154275875 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBA1 16 176680 177522 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBA2 16 172876 173710 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBB 11 5225464 5229395 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBD 11 5232678 5243657 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBE1 11 5268345 5505652 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 45 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBEGF 5 140332843 140346631 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBG1 11 5248079 5249859 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBG2 11 5253190 5505605 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 48 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBM 16 153892 166768 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBP1 7 107168961 107202529 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBQ1 16 180453 181181 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBS1L 6 134960378 135103056 FALSE 493 -0.929955024876043 13 134918433 135189741 0.522719719214577 1 0 0.522719719214577 1 0 271308 1 3 24 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HBZ 16 152687 154503 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCAR1 12 122726076 122730843 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCAR2 12 122701293 122703343 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCAR3 12 122714756 122716892 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 5 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCCS 23 11111301 11123078 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCFC1 23 153947553 153971807 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 40 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCFC1R1 16 3022620 3024286 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCFC2 12 104064457 104106524 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCK 20 32052188 32101856 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCLS1 3 121631399 121660927 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCN1 5 45254950 45696498 FALSE 375 2.07572131362409 117 44300254 45262566 0.593481580287395 18 NA 0.593481580287395 18 NA 962312 NA 3 14 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCN2 19 589893 617159 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 13 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCN3 1 155277583 155289848 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCN4 15 73319859 73369264 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCRT 17 42184060 42185452 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCRTR1 1 31617686 31632518 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCRTR2 6 55106460 55282620 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HCST 19 35902480 35904377 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC1 1 32292086 32333635 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC10 22 50245183 50251405 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC11 3 13479724 13506424 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC2 6 113933028 114011308 FALSE 483 2.05766275859793 115 113860470 113941045 0.593481580287395 18 NA 0.593481580287395 18 NA 80575 NA 2 46 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC3 5 141620876 141636870 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC4 2 239048168 239401654 TRUE 228 2.06336376578552 115 239048278 239053453 0.593481580287395 18 NA 0.593481580287395 18 NA 5175 NA 1 61 4 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC5 17 44076746 44123702 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 29 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC6 23 48801377 48824982 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 30 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC7 12 47782722 47833132 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC8 23 72329516 72573199 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDAC9 7 18086949 19002416 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDC 15 50241947 50266026 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDDC2 6 125219962 125302078 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDDC3 15 90929964 90935196 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDGF 1 156742107 156766925 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDGFL1 6 22569493 22571666 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDGFL2 19 4472287 4502211 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDGFL3 15 83112738 83208018 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDHD2 18 47107403 47150520 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDHD3 9 113373419 113376999 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDHD5 22 17137511 17165287 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDLBP 2 241227264 241317061 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 31 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HDX 23 84317874 84502479 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEATR1 1 236549005 236604504 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 49 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEATR3 16 50065941 50106387 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 16 6 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEATR4 14 73478484 73558947 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 33 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEATR5A 14 31291791 31420582 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 37 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEATR5B 2 36968383 37084342 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 41 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEATR6 17 60043194 60078931 FALSE 1208 -0.274405632017478 46 59953065 60500374 0.261157737158964 3 NA 0.261157737158964 3 NA 547309 NA 7 24 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEATR9 17 35854946 35868891 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEBP1 12 12974864 13000273 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEBP2 6 138403531 138422197 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HECA 6 139135112 139180802 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HECTD1 14 31100112 31207804 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 52 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HECTD2 10 91409280 91514829 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HECTD3 1 45002540 45011329 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 22 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HECTD4 12 112160188 112382439 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 85 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HECW1 7 43112599 43566001 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HECW2 2 196189099 196593692 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 33 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEG1 3 124965710 125055958 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HELB 12 66302545 66347645 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 20 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HELLS 10 94501434 94613905 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 31 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HELQ 4 83407343 83455856 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HELT 4 185018841 185020804 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HELZ 17 67070438 67245989 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 40 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HELZ2 20 63558086 63574239 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 40 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEMGN 9 97926791 97944856 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEMK1 3 50569152 50596168 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HENMT1 1 108648290 108661526 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEPACAM 11 124919193 124936412 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEPACAM2 7 93188586 93226524 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEPH 23 66162549 66268867 FALSE 1487 -0.50792792543453 34 64268792 66605144 NA 2 NA NA 2 NA 2336352 NA 8 24 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEPHL1 11 94021361 94113751 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEPN1 11 124919244 124920677 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERC1 15 63608618 63833942 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 94 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERC2 15 28111040 28322152 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 97 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERC3 4 88592423 88708542 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 28 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERC4 10 67921899 68075348 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERC5 4 88457117 88506163 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 26 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERC6 4 88378739 88443111 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 25 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERPUD1 16 56932048 56944863 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HERPUD2 7 35632659 35695571 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HES1 3 194136145 194138732 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HES2 1 6412418 6424670 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HES3 1 6244192 6245578 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HES4 1 998962 1000172 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HES5 1 2528745 2530245 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HES6 2 238238267 238240662 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HES7 17 8120590 8124092 FALSE 1147 -0.887294624890009 13 8096639 8189086 0.522719719214577 1 0 0.522719719214577 1 0 92447 1 7 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HESX1 3 57197838 57227606 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEXA 15 72340919 72376476 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEXB 5 74640023 74722647 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEXDC 17 82418318 82442645 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 15 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEXIM1 17 45148502 45152101 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEXIM2 17 45160700 45170040 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEY1 8 79764010 79767863 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEY2 6 125747664 125761269 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HEYL 1 39624153 39639945 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HFE 6 26087281 26098343 FALSE 431 -0.96321175880689 11 26087469 26108068 0.593443012170704 1 0 0.593443012170704 1 0 20599 1 3 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HFM1 1 91260766 91404869 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 40 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HGD 3 120628173 120682571 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HGF 7 81699008 81770438 FALSE 538 2.36664616681678 121 81699165 81950421 0.593481580287395 23 NA 0.593481580287395 23 NA 251256 NA 2 48 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HGFAC 4 3441887 3449495 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HGH1 8 144137769 144140843 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HGS 17 81683326 81703138 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 22 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HGSNAT 8 43140455 43202855 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHAT 1 210328252 210676296 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHATL 3 42692663 42702827 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHEX 10 92689951 92695646 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHIP 4 144646021 144745271 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHIPL1 14 99645110 99680569 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHIPL2 1 222522258 222548103 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHLA1 8 132061486 132111159 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 18 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHLA2 3 108296490 108378285 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HHLA3 1 70354805 70385339 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIBADH 7 27525442 27662995 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIBCH 2 190189735 190344193 FALSE 197 -0.634190880282039 28 190057538 191008950 NA 2 NA NA 2 NA 951412 NA 9 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIC1 17 2054154 2063241 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 11 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIC2 22 21417404 21451463 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HID1 17 74950743 74973166 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 19 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIF1A 14 61695513 61748259 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIF1AN 10 100529072 100559998 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIF3A 19 46297046 46343433 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIGD1A 3 42784298 42804531 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIGD1B 17 44846353 44850480 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIGD1C 12 50953922 50970506 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIGD2A 5 176388747 176389771 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIGD2B 15 72675782 72686149 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIKESHI 11 86302211 86345931 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HILPDA 7 128455849 128458418 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 1 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HINFP 11 119121587 119136044 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 11 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HINT1 5 131159027 131171735 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HINT2 9 35812960 35815354 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HINT3 6 125956781 125980244 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIP1 7 75533300 75738962 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 31 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIP1R 12 122834453 122862960 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 31 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIPK1 1 113929192 113977869 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIPK2 7 139561570 139777778 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIPK3 11 33256672 33357023 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIPK4 19 40379271 40390187 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIRA 22 19330698 19447450 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 34 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIRIP3 16 29992321 29996436 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H1A 6 26017085 26017732 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 3 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H1B 6 27866849 27867529 TRUE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H1C 6 26055787 26056428 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H1D 6 26234268 26234933 TRUE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 3 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H1E 6 26156354 26157107 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 3 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H1T 6 26107419 26108136 FALSE 431 -0.96321175880689 11 26087469 26108068 0.593443012170704 1 0 0.593443012170704 1 0 20599 1 3 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AA 6 25726132 25726527 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 2 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AB 6 26033176 26033568 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AC 6 26124145 26139116 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AD 6 26198851 26199243 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AE 6 26216975 26217483 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AG 6 27133042 27135291 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AH 6 27147129 27147515 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AI 6 27808199 27808701 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AJ 6 27814354 27814740 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AK 6 27837947 27838339 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AL 6 27865355 27865747 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2AM 6 27892757 27893149 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BA 6 25726777 25727292 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BB 6 26043277 26043657 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BC 6 26114873 26123926 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BD 6 26158146 26171349 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 4 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BE 6 26172059 26184655 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BF 6 26199520 26200715 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BG 6 26215159 26216692 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BH 6 26251651 26253710 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BI 6 26272976 26273356 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BJ 6 27125897 27132750 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BK 6 27146418 27146798 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BL 6 27807444 27807931 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BM 6 27815044 27815424 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BN 6 27837760 27865798 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H2BO 6 27893463 27893843 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3A 6 26020490 26020900 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3B 6 26031650 26032060 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3C 6 26045411 26045821 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3D 6 26196840 26197250 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3E 6 26224199 26227473 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 11 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3F 6 26250195 26250605 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3G 6 26269405 26271815 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 3 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3H 6 27810064 27811300 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3I 6 27871905 27872315 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H3J 6 27890382 27893106 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4B 6 26026815 26027252 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4C 6 26103876 26104310 FALSE 431 -0.96321175880689 11 26087469 26108068 0.593443012170704 1 0 0.593443012170704 1 0 20599 1 3 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4D 6 26188765 26189076 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4E 6 26204552 26206038 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4F 6 26240426 26240737 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 1 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4G 6 26246681 26246977 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 1 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4H 6 26277609 26285638 FALSE 432 0.821695347001224 79 26123726 26285443 0.593481580287395 7 NA 0.593481580287395 7 NA 161717 NA 22 2 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4I 6 27138588 27139881 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4J 6 27824108 27824480 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4K 6 27831216 27831527 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST1H4L 6 27873199 27873510 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST2H2AB 1 149887524 149887916 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST2H2AC 1 149886975 149887364 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST2H2BE 1 149884459 149886652 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST2H2BF 1 149782689 149812373 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST2H3D 1 149813271 149813681 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST2H3PS2 1 143905556 143905966 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST3H2A 1 228456979 228457873 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST3H2BB 1 228458107 228460470 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST3H3 1 228424845 228425325 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIST4H4 12 14767999 14771131 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIVEP1 6 12008762 12164999 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 37 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIVEP2 6 142751467 142956698 FALSE 499 1.61389404877028 100 142751516 142945520 0.593481580287395 13 NA 0.593481580287395 13 NA 194004 NA 1 49 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HIVEP3 1 41506365 42035925 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 31 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HJURP 2 233833416 233854566 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HJV 1 146017468 146036746 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 7 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HK1 10 69269984 69401884 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HK2 2 74833981 74893359 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HK3 5 176880869 176899332 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HKDC1 10 69220303 69267559 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HKR1 19 37312837 37369365 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-A 6 29941260 29945884 TRUE 437 1.38407985060359 92 29722964 29941580 0.593481580287395 11 1 0.593481580287395 11 1 218616 10 3 12 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-B 6 31269491 31357188 TRUE 445 1.18201667424423 86 31170330 31412421 0.593481580287395 9 2 0.593481580287395 9 2 242091 7 4 26 14 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-C 6 31268749 31272130 FALSE 445 1.18201667424423 86 31170330 31412421 0.593481580287395 9 2 0.593481580287395 9 2 242091 7 4 12 6 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DMA 6 32948613 32969094 FALSE 451 1.48707206363679 98 32934851 32952965 0.593481580287395 12 NA 0.593481580287395 12 NA 18114 NA 3 9 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DMB 6 32934629 32941070 FALSE 451 1.48707206363679 98 32934851 32952965 0.593481580287395 12 NA 0.593481580287395 12 NA 18114 NA 3 10 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DOA 6 33004178 33009612 FALSE 453 1.18124249255423 87 32978356 33009643 0.593481580287395 9 NA 0.593481580287395 9 NA 31287 NA 2 14 6 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DOB 6 32812763 32820466 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 10 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DPA1 6 33064569 33080775 FALSE 454 1.48392111280362 97 33064570 33076153 0.593481580287395 12 0 0.593481580287395 12 0 11583 12 2 17 16 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DPB1 6 33075926 33087201 FALSE 454 1.48392111280362 97 33064570 33076153 0.593481580287395 12 0 0.593481580287395 12 0 11583 12 2 10 9 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DQA1 6 32628179 32647062 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 11 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DQA2 6 32741342 32747215 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 9 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DQB1 6 32659467 32668383 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 13 8 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DQB2 6 32756098 32763534 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 10 8 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DRA 6 32439842 32445046 FALSE 448 -1.37938415915986 4 32229163 32442433 0.471349604034031 0 0 0.471349604034031 0 0 213270 0 3 8 5 TRUE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DRB1 6 32578769 32589848 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 8 8 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-DRB5 6 32517343 32530287 FALSE 449 0.724559600321196 76 32442664 32820478 0.593481580287395 6 1 0.593481580287395 6 1 377814 5 9 5 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-E 6 30489467 30494205 FALSE 441 1.85612175438588 109 30489582 30547266 0.593481580287395 15 NA 0.593481580287395 15 NA 57684 NA 2 14 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-F 6 29722775 29738528 FALSE 437 1.38407985060359 92 29722964 29941580 0.593481580287395 11 1 0.593481580287395 11 1 218616 10 3 21 10 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLA-G 6 29826967 29831125 FALSE 437 1.38407985060359 92 29722964 29941580 0.593481580287395 11 1 0.593481580287395 11 1 218616 10 3 12 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLCS 21 36750888 36990236 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLF 17 55265012 55325065 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLTF 3 149030127 149086554 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HLX 1 220879400 220885059 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HM13 20 31514410 31577923 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMBOX1 8 28890394 29064764 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMBS 11 119084866 119093549 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMCES 3 129278828 129306186 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMCN1 1 185734551 186190949 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 120 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMCN2 9 130265882 130434123 FALSE 695 -0.751937959899922 18 129829569 130284582 0.387809979850725 1 0 0.387809979850725 1 0 455013 1 6 101 6 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMG20A 15 77420412 77485607 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMG20B 19 3572777 3579088 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGA1 6 34236873 34246231 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGA2 12 65824131 65966295 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGB1 13 30456704 30617597 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGB2 4 173331695 173335125 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGB3 23 150980509 150990775 FALSE 1522 -0.468653153264543 37 150592603 151672444 NA 2 NA NA 2 NA 1079841 NA 7 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGB4 1 33860475 33864791 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGCL 1 23801885 23838620 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGCLL1 6 55434369 55579214 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGCR 5 75336329 75362104 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGCS1 5 43289395 43313512 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGCS2 1 119747996 119768905 FALSE 48 -0.842352747885532 15 119623366 119906598 0.449390955025597 1 0 0.449390955025597 1 0 283232 1 5 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGN1 21 39342315 39349647 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGN2 1 26472450 26475972 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGN3 6 79201245 79234738 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGN4 6 26538405 26546254 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGN5 23 81113701 81201942 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGXB3 5 150000046 150053142 FALSE 404 -0.510178414155637 34 149597850 150052115 NA 2 NA NA 2 NA 454265 NA 6 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMGXB4 22 35257452 35295807 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMHB1 5 143812161 143820719 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMMR 5 163460203 163491945 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMOX1 22 35380361 35394214 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMOX2 16 4474690 4510347 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMSD 18 63949301 63981774 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 6 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMX1 4 8846076 8871817 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMX2 10 123148122 123150672 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HMX3 10 123135962 123137741 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNF1A 12 120978543 121002512 TRUE 924 1.94876692272873 111 120978522 121002214 0.593481580287395 17 NA 0.593481580287395 17 NA 23692 NA 2 26 8 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNF1B 17 37686432 37745247 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNF4A 20 44355700 44434596 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNF4G 8 75407914 75566843 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNMT 2 137964020 138016364 FALSE 175 -0.921750094504028 13 137170791 138780250 0.522719719214577 1 0 0.522719719214577 1 0 1609459 1 4 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPA0 5 137745651 137754376 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPA1 12 54280193 54287088 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPA1L2 13 52642425 52643796 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 4 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPA2B1 7 26173057 26201529 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPA3 2 177212563 177223958 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 22 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPAB 5 178204507 178211163 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPC 14 21209136 21269494 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPCL1 1 12847408 12848725 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPCL2 1 13115496 13116854 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPD 4 82352498 82374503 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPDL 4 82422564 82430408 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPF 10 43385617 43409166 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPH1 5 179614178 179634784 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPH2 23 101408295 101414133 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPH3 10 68331174 68343191 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPK 9 83968083 83980616 FALSE 672 1.05573594419498 83 83968286 84001903 0.593481580287395 8 NA 0.593481580287395 8 NA 33617 NA 2 29 4 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPL 19 38836388 38852347 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPLL 2 38561978 38603586 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPM 19 8444767 8489114 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPR 1 23303771 23344336 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPU 1 244840638 244864560 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPUL1 19 41262496 41307598 FALSE 1338 -0.617993748746664 28 41264533 41322632 NA 2 NA NA 2 NA 58099 NA 3 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPUL2 11 62712630 62727472 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HNRNPUL2-BSCL2 11 62690275 62727384 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 32 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOGA1 10 97584323 97612802 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOMER1 5 79372636 79514217 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOMER2 15 82836946 82986153 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOMER3 19 18929201 18941261 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOMEZ 14 23272422 23299447 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOOK1 1 59814786 59876378 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOOK2 19 12763003 12872740 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 73 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOOK3 8 42896932 43030539 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOPX 4 56647988 56681899 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 4 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HORMAD1 1 150698060 150720888 FALSE 55 -0.603676872005541 28 150622798 150876627 NA 2 NA NA 2 NA 253829 NA 6 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HORMAD2 22 30080174 30177075 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA1 7 27092993 27095996 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 5 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA10 7 27170591 27180261 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA11 7 27181510 27185223 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA13 7 27193503 27200106 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA2 7 27100354 27102811 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA3 7 27106184 27152581 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA4 7 27128507 27130799 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA5 7 27141052 27143668 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA6 7 27145396 27150603 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA7 7 27153716 27157936 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXA9 7 27162435 27175180 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB1 17 48528526 48531001 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 5 1 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB13 17 48724763 48729178 TRUE 1197 2.11918654915081 118 48724910 48733819 0.593481580287395 19 NA 0.593481580287395 19 NA 8909 NA 1 14 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB2 17 48540894 48544989 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 5 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB3 17 48548870 48604912 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 17 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB4 17 48575513 48580111 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 4 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB5 17 48591257 48593961 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 4 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB6 17 48595751 48604992 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 3 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB7 17 48607227 48633572 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 10 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB8 17 48611377 48614939 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 4 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXB9 17 48621159 48626356 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 3 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC10 12 53985065 53990279 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC11 12 53973126 53977643 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC12 12 53954834 53958956 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC13 12 53938765 53946544 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC4 12 54016931 54056030 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC5 12 54032853 54035358 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC6 12 53990624 54030823 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC8 12 54009106 54012362 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXC9 12 53994895 54003337 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD1 2 176188579 176190907 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD10 2 176108790 176119942 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD11 2 176104216 176109754 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD12 2 176099730 176101193 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD13 2 176092891 176095938 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD3 2 176136612 176173102 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD4 2 176151222 176153226 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD8 2 176129694 176132695 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HOXD9 2 176122720 176124937 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HP 16 72054592 72061055 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HP1BP3 1 20742661 20787323 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPCA 1 32885994 32898441 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPCAL1 2 10302889 10427617 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPCAL4 1 39678648 39691689 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPD 12 121839527 121863596 FALSE 926 2.34022481939284 121 121804769 121840048 0.593481580287395 22 NA 0.593481580287395 22 NA 35279 NA 2 14 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPDL 1 45326905 45328533 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPF1 4 169729465 169757953 FALSE 360 -0.641187509684452 28 169424742 172229692 NA 2 NA NA 2 NA 2804950 NA 6 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPGD 4 174490177 174523154 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPGDS 4 94298535 94342876 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPN 19 35040506 35066571 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPR 16 72063148 72077246 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPRT1 23 134460153 134520513 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPS1 10 98416198 98446947 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 19 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPS3 3 149129584 149173732 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPS4 22 26443423 26483837 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPS5 11 18278668 18322198 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPS6 10 102065390 102068038 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPSE 4 83292461 83335153 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPSE2 10 98457077 99235862 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HPX 11 6431049 6442617 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HR 8 22114415 22133384 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 24 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRAS 11 532242 537287 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRASLS 3 193241125 193277738 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRASLS2 11 63552770 63563383 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRASLS5 11 63461404 63491194 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRC 19 49151198 49155424 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRCT1 9 35906192 35907141 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRG 3 186660216 186678240 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRH1 3 11137093 11263557 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRH2 5 175658030 175710756 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRH3 20 62214970 62220267 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRH4 18 24460629 24479957 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRK 12 116856144 116881441 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 1 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HRNR 1 152212082 152224193 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 30 19 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS1BP3 2 20560448 20651089 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS2ST1 1 86914648 87109998 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS3ST1 4 11393150 11429765 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS3ST2 16 22814177 22916338 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS3ST3A1 17 13495689 13601927 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS3ST3B1 17 14301083 14349404 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS3ST4 16 25692026 26137688 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS3ST5 6 114055586 114343045 FALSE 484 0.428726327952922 70 113941127 114057956 0.569287299993522 5 NA 0.569287299993522 5 NA 116829 NA 2 5 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS3ST6 16 1911463 1918440 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS6ST1 2 128236716 128318577 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS6ST2 23 132626016 132961395 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HS6ST3 13 96090839 96839562 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSBP1 16 83807843 83819737 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSBP1L1 18 79964561 79970822 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSCB 22 28742031 28757515 FALSE 1427 -0.30656290382667 44 28687879 28878609 0.18904974046126 3 NA 0.18904974046126 3 NA 190730 NA 4 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD11B1 1 209686178 209734950 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD11B1L 19 5680604 5688523 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD11B2 16 67430652 67437553 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B1 17 42549214 42555213 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B10 23 53431258 53434373 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B11 4 87336610 87391386 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B12 11 43680558 43856617 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B13 4 87303789 87322906 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B14 19 48813017 48836678 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B2 16 82035004 82098534 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B3 9 96235306 96302176 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B4 5 119452443 119637199 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 32 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B6 12 56752161 56787790 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B7 1 162790702 162812817 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD17B8 6 33204642 33206831 FALSE 456 -0.636119947778167 28 33164464 33263766 NA 2 NA NA 2 NA 99302 NA 6 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD3B1 1 119507198 119515054 FALSE 47 1.15403669217262 85 119419521 119622961 0.593481580287395 9 NA 0.593481580287395 9 NA 203440 NA 3 8 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD3B2 1 119414931 119423035 FALSE 46 -0.673684454186075 25 117628427 119415546 0.276933305076759 1 0 0.276933305076759 1 0 1787119 1 7 6 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSD3B7 16 30985207 30989152 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSDL1 16 84122146 84145192 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSDL2 9 112379937 112472410 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSF1 8 144291591 144314722 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSF2 6 122399546 122433119 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSF2BP 21 43529192 43659493 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSF4 16 67164681 67169945 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSF5 17 58420167 58488384 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 11 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSFX1 23 149774068 149776867 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSFX2 23 149592515 149594716 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSFX3 23 149548210 149549932 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSFX4 23 149929645 149931287 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSH2D 19 16134028 16158575 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSP90AA1 14 102080738 102139699 FALSE 995 1.54332769316775 98 102080824 102140110 0.593481580287395 12 NA 0.593481580287395 12 NA 59286 NA 2 23 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSP90AB1 6 44246166 44253888 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSP90B1 12 103930107 103953645 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA12A 10 116671192 116850236 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA12B 20 3732667 3753111 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA13 21 14371115 14383484 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA14 10 14838160 14871741 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA1A 6 31815464 31817946 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA1B 6 31827735 31830255 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA1L 6 31809619 31815065 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA2 14 64535905 64546173 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA4 5 133051962 133106449 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA4L 4 127781821 127840733 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA5 9 125234853 125241330 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA6 1 161524540 161526910 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA8 11 123057489 123063230 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPA9 5 138553756 138575724 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 18 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB1 7 76302544 76304295 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB11 1 53916574 53945929 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB2 11 111912242 111914093 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB2-C11orf52 11 111912736 111926871 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB3 5 54455601 54456384 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB6 19 35754569 35758079 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB7 1 16014028 16019594 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB8 12 119178642 119221131 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPB9 17 42121431 42123352 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPBAP1 3 122740003 122793824 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPBP1 19 55262231 55280381 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPD1 2 197486581 197516737 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPE1 2 197499994 197503457 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPE1-MOB4 2 197500413 197550726 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPG2 1 21822245 21937297 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 107 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HSPH1 13 31134974 31162388 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 21 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTATIP2 11 20363685 20383783 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTATSF1 23 136497079 136512346 FALSE 1518 -0.532241026237508 31 136350124 136779443 NA 2 NA NA 2 NA 429319 NA 6 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTD2 3 58306262 58318574 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTN1 4 70050402 70058845 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTN3 4 70028413 70036538 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR1A 5 63960356 63962507 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR1B 6 77461753 77463773 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR1D 1 23191895 23194729 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR1E 6 86937306 87016683 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR1F 3 87990696 87993835 FALSE 271 -0.374182784035321 41 87990792 88156503 NA 2 NA NA 2 NA 165711 NA 4 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR2A 13 46831550 46897076 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR2B 2 231108230 231125118 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR2C 23 114584078 114910061 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR3A 11 113974881 113990313 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR3B 11 113904677 113946565 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR3C 3 184053047 184060671 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR3D 3 184031544 184039369 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR3E 3 184097064 184106995 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 11 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR4 5 148451032 148677235 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR5A 7 155070324 155087392 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR6 1 19665287 19679562 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTR7 10 90740823 90857698 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTRA1 10 122458551 122514908 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTRA2 2 74529377 74533348 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTRA3 4 8269765 8307111 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTRA4 8 38974164 38988662 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HTT 4 3041422 3243960 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 68 6 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HUNK 21 31873315 32044633 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HUS1 7 47963288 47979553 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HUS1B 6 655939 656963 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HUWE1 23 53532096 53686729 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 93 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HVCN1 12 110627841 110704950 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYAL1 3 50299889 50312381 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYAL2 3 50317790 50322906 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYAL3 3 50292831 50299468 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYAL4 7 123828983 123877478 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYDIN 16 70807378 71230722 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 90 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYI 1 43451003 43453989 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 8 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYKK 15 78507564 78537372 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYLS1 11 125883614 125900648 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYOU1 11 119044189 119057202 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 25 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYPK 15 43796142 43803043 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 14 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 HYPM 23 37990817 37991317 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IAH1 2 9473658 9496543 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IAPP 12 21354959 21379978 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IARS 9 92210207 92293756 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 33 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IARS2 1 220094102 220148041 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IBA57 1 228165815 228182257 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IBSP 4 87799581 87812435 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IBTK 6 82169983 82247754 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 31 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICA1 7 8113184 8262687 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICA1L 2 202773150 202871985 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICAM1 19 10270835 10286615 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICAM2 17 64002594 64020634 FALSE 1214 -0.224902535009953 49 63943066 64214199 0.331933131290263 3 NA 0.331933131290263 3 NA 271133 NA 5 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICAM3 19 10333776 10339823 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 11 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICAM4 19 10286967 10288522 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICAM5 19 10289981 10296778 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 17 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICE1 5 5420664 5490234 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 39 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICE2 15 60419609 60479160 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICK 6 53001279 53061802 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICMT 1 6221193 6235972 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICOS 2 203936748 203961577 FALSE 206 1.6976149384437 102 203867792 203955997 0.593481580287395 14 NA 0.593481580287395 14 NA 88205 NA 2 6 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ICOSLG 21 44217014 44240966 FALSE 1410 0.248050459668393 64 44079672 44230074 0.593443012170704 4 NA 0.593443012170704 4 NA 150402 NA 4 19 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ID1 20 31605283 31606515 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ID2 2 8678845 8684453 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ID3 1 23557918 23559794 TRUE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ID4 6 19837386 19840684 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDE 10 92451684 92574076 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDH1 2 208236227 208266074 FALSE 208 0.994930512898928 82 208236403 208271580 0.593481580287395 8 NA 0.593481580287395 8 NA 35177 NA 2 21 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDH2 15 90083045 90102504 FALSE 1053 1.61535571268966 100 90079820 90102345 0.593481580287395 13 NA 0.593481580287395 13 NA 22525 NA 2 20 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDH3A 15 78131498 78171949 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDH3B 20 2658395 2664219 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 13 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDH3G 23 153785766 153794523 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDI1 10 1039152 1049170 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDI2 10 1018907 1025859 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDNK 9 83623049 83644130 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDO1 8 39902275 39928444 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDO2 8 39934614 40016391 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDS 23 149476990 149521096 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IDUA 4 986997 1004506 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 24 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IER2 19 13150415 13154908 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IER3 6 30743199 30744554 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IER3IP1 18 47152834 47176374 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IER5 1 181088712 181092899 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IER5L 9 129175552 129178262 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFFO1 12 6538375 6556083 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFFO2 1 18904281 18956686 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI16 1 158999968 159055155 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 16 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI27 14 94104836 94116698 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI27L1 14 94081282 94103846 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI27L2 14 94127779 94130253 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI30 19 18173162 18178117 FALSE 1319 1.77375950181051 105 18153115 18175590 0.593481580287395 14 NA 0.593481580287395 14 NA 22475 NA 3 9 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI35 17 43006725 43014456 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI44 1 78649796 78664078 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI44L 1 78619922 78646145 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 10 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFI6 1 27666061 27672218 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFIH1 2 162267079 162318703 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFIT1 10 89392546 89406486 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFIT1B 10 89378056 89385205 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFIT2 10 89283694 89309276 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFIT3 10 89327894 89340971 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFIT5 10 89414586 89421001 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFITM1 11 313506 315272 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFITM10 11 1732410 1750591 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFITM2 11 307631 315272 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFITM3 11 319669 327537 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFITM5 11 298200 299526 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA1 9 21440454 21441316 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA10 9 21206181 21207143 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA13 9 21367424 21368962 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA14 9 21239002 21239991 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA16 9 21216373 21217311 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA17 9 21227243 21228222 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA2 9 21384254 21385388 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA21 9 21165637 21166660 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA4 9 21186694 21187671 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA5 9 21304326 21305312 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA6 9 21349835 21351378 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA7 9 21201469 21202205 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNA8 9 21409147 21410185 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNAR1 21 33324477 33359862 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNAR2 21 33229901 33265675 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNB1 9 21077105 21077963 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNE 9 21480839 21482313 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNG 12 68154768 68159747 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNGR1 6 137197484 137219449 TRUE 497 1.29742908483319 90 137194867 138092196 0.593481580287395 10 NA 0.593481580287395 10 NA 897329 NA 4 23 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNGR2 21 33402896 33479348 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNK 9 27524314 27526498 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNL1 19 39296325 39298673 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNL2 19 39268514 39270092 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNL3 19 39243553 39245129 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNLR1 1 24154157 24187959 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFNW1 9 21140214 21142145 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFRD1 7 112422968 112481017 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFRD2 3 50287732 50292918 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT122 3 129440036 129520507 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 31 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT140 16 1510427 1612110 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT172 2 27444371 27489789 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 49 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT20 17 28328325 28335489 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT22 7 101313367 101321823 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT27 22 36758202 36776256 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT43 14 75902136 76084585 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT46 11 118544528 118572970 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT52 20 43590931 43647296 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT57 3 108160812 108222570 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT74 9 26947039 27062930 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 28 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT80 3 160256986 160399880 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT81 12 110124335 110218797 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IFT88 13 20567069 20691437 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGBP1 23 70133449 70166324 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGDCC3 15 65327127 65378040 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGDCC4 15 65381464 65423072 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 26 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGF1 12 102395874 102481744 FALSE 906 2.12023571644356 118 102197214 102840474 0.593481580287395 19 NA 0.593481580287395 19 NA 643260 NA 4 34 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGF1R 15 98648539 98964530 FALSE 1060 1.71251399754976 103 98648701 98968644 0.593481580287395 14 NA 0.593481580287395 14 NA 319943 NA 2 58 8 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGF2 11 2129112 2158658 FALSE 759 1.20431609491167 87 1956412 2149508 0.593481580287395 9 NA 0.593481580287395 9 NA 193096 NA 3 29 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGF2BP1 17 48997412 49055650 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGF2BP2 3 185643739 185825056 FALSE 308 -0.794389979193731 18 185491580 185937798 0.387809979850725 1 0 0.387809979850725 1 0 446218 1 5 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGF2BP3 7 23310209 23470467 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGF2R 6 159969099 160113507 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 52 7 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFALS 16 1790413 1794971 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBP1 7 45888357 45893668 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBP2 2 216632828 216664436 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBP3 7 45912245 45921874 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBP4 17 40443461 40457731 FALSE 1181 -0.700455617092272 25 40443951 40565437 0.276933305076759 1 0 0.276933305076759 1 0 121486 1 3 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBP5 2 216672105 216695525 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBP6 12 53097436 53102345 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBP7 4 57030773 57110385 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFBPL1 9 38408994 38424447 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFL1 19 46229752 46231243 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFL2 19 46143106 46161299 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFL3 19 46120071 46124674 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFL4 19 46039748 46077118 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFLR1 19 35738801 35742453 FALSE 1331 1.90074860676335 111 35719806 35739731 0.593481580287395 16 NA 0.593481580287395 16 NA 19925 NA 3 9 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGFN1 1 201190825 201228952 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 57 13 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGHMBP2 11 68903842 68940602 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 19 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGIP 5 140125935 140129392 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGLL1 22 23573125 23580308 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGLL5 22 22887780 22896107 FALSE 1421 1.2999135454728 90 22646437 22896109 0.593481580287395 10 NA 0.593481580287395 10 NA 249672 NA 2 7 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGLON5 19 51311848 51330354 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF1 23 131273506 131578899 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 32 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF10 3 151425384 151458709 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 36 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF11 3 118900557 119146068 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF21 1 18107746 18378483 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF22 11 18704305 18726230 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 29 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF23 19 44613630 44636781 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF3 1 116574399 116667755 FALSE 42 -0.448523507205421 37 116388682 117121244 NA 2 NA NA 2 NA 732562 NA 8 21 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF5 21 39745407 39802096 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF6 16 21639537 21652660 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF8 1 160091340 160098943 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF9 1 159927039 159945604 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 25 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IGSF9B 11 133908564 133956985 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 29 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IHH 2 219054420 219060467 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IK 5 140647058 140662479 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKBIP 12 98613405 98645113 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKBKB 8 42271302 42332653 FALSE 612 1.26704786698361 89 42271373 42332401 0.593481580287395 10 NA 0.593481580287395 10 NA 61028 NA 1 29 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKBKE 1 206470476 206496889 FALSE 88 0.383035224360998 68 206461084 206496624 0.389403197422789 6 NA 0.389403197422789 6 NA 35540 NA 2 25 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKBKG 23 154541199 154565046 FALSE 1525 2.21894989166194 120 154517911 154547482 0.593481580287395 20 NA 0.593481580287395 20 NA 29571 NA 2 11 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKZF1 7 50304068 50405101 FALSE 532 1.65375894783798 100 50304209 50447229 0.593481580287395 13 NA 0.593481580287395 13 NA 143020 NA 2 39 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKZF2 2 212999691 213152427 FALSE 211 -0.404833419723938 41 211387031 214575792 NA 2 NA NA 2 NA 3188761 NA 4 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKZF3 17 39757715 39864188 TRUE 1176 1.85081278261751 109 39757927 39864166 0.593481580287395 15 NA 0.593481580287395 15 NA 106239 NA 1 36 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKZF4 12 56007659 56038435 FALSE 884 -0.87328128400006 13 55986964 56074489 0.522719719214577 1 0 0.522719719214577 1 0 87525 1 4 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IKZF5 10 122990806 123008817 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL10 1 206767602 206772494 FALSE 90 0.190362503288792 63 206637710 206774383 0.54220702508464 4 NA 0.54220702508464 4 NA 136673 NA 3 8 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL10RA 11 117986348 118003037 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 10 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL10RB 21 33266358 33310187 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL11 19 55364389 55370463 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL11RA 9 34650702 34661892 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL12A 3 159988750 159996019 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL12B 5 159314783 159330887 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL12RB1 19 18058995 18098944 FALSE 1318 -0.547059940466149 31 17859952 18149709 NA 2 NA NA 2 NA 289757 NA 7 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL12RB2 1 67307364 67397090 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL13 5 132656263 132661110 FALSE 395 1.22265642557996 87 132446704 132658234 0.593481580287395 9 NA 0.593481580287395 9 NA 211530 NA 5 4 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL13RA1 23 118727572 118794539 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL13RA2 23 115003975 115019977 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL15 4 141636599 141733987 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL15RA 10 5943639 5978187 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL16 15 81159575 81314058 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 30 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17A 6 52186375 52190638 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17B 5 149371324 149404202 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17C 16 88638591 88640473 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17D 13 20702127 20723098 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17F 6 52236681 52244537 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17RA 22 17084954 17115694 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17RB 3 53846580 53865800 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17RC 3 9917074 9933630 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17RD 3 57089982 57170306 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17RE 3 9902612 9916402 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL17REL 22 49994513 50012659 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL18 11 112143251 112164117 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL18BP 11 71998541 72005715 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL18R1 2 102311529 102398775 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL18RAP 2 102418689 102452565 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL19 1 206798870 206842981 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1A 2 112773915 112784590 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1B 2 112829751 112836903 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1F10 2 113067970 113075850 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1R1 2 102064544 102179874 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1R2 2 101991844 102028544 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1RAP 3 190514051 190659750 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1RAPL1 23 28587399 29956723 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1RAPL2 23 104566315 105767829 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1RL1 2 102311502 102352037 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1RL2 2 102186973 102240002 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL1RN 2 113107214 113134016 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 7 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL2 4 122451470 122456725 FALSE 352 -0.689691915417127 25 121839741 122741842 0.276933305076759 1 0 0.276933305076759 1 0 902101 1 7 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL20 1 206865354 206869223 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL20RA 6 136999971 137045180 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL20RB 3 136946230 137011085 FALSE 288 -0.196524450016373 52 136336203 138077598 0.426118104232275 3 NA 0.426118104232275 3 NA 1741395 NA 8 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL21 4 122610108 122621069 FALSE 352 -0.689691915417127 25 121839741 122741842 0.276933305076759 1 0 0.276933305076759 1 0 902101 1 7 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL21R 16 27402162 27452042 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL22 12 68248242 68253604 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL22RA1 1 24119771 24143121 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL22RA2 6 137143820 137173648 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL23A 12 56334174 56340410 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL23R 1 67138907 67259979 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL24 1 206897443 206904139 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL25 14 23372809 23376403 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL26 12 68201351 68225821 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL27 16 28499362 28512051 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL27RA 19 14031748 14053216 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL2RA 10 6010689 6062370 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 8 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL2RB 22 37125838 37175054 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL2RG 23 71107404 71112108 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL3 5 132060529 132063204 FALSE 394 -0.271932115962752 46 131990195 132441120 0.261157737158964 3 NA 0.261157737158964 3 NA 450925 NA 9 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL31 12 122172030 122174199 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL31RA 5 55851379 55922853 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL32 16 3065297 3082192 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL33 9 6215786 6257983 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL34 16 70579895 70660682 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL36A 2 113005461 113008044 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL36B 2 113022091 113052867 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL36G 2 112973203 112985665 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL36RN 2 113058638 113065382 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL37 2 112912971 112918882 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL4 5 132673986 132682676 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL4I1 19 49889654 49929539 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL4R 16 27313668 27364778 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 23 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL5 5 132541444 132556838 FALSE 395 1.22265642557996 87 132446704 132658234 0.593481580287395 9 NA 0.593481580287395 9 NA 211530 NA 5 7 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL5RA 3 3066326 3126613 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL6 7 22725884 22732002 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL6R 1 154405193 154469450 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL6ST 5 55935095 55994993 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL7 8 78675743 78805523 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL7R 5 35852695 35879603 FALSE 371 2.13112431202143 118 35857009 35879638 0.593481580287395 19 NA 0.593481580287395 19 NA 22629 NA 1 23 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IL9 5 135892246 135895827 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ILDR1 3 121987323 122022258 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ILDR2 1 166895711 166975482 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ILF2 1 153661788 153671048 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ILF3 19 10654261 10692417 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ILK 11 6603708 6610874 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ILKAP 2 238170401 238203729 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ILVBL 19 15114984 15125785 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMMP1L 11 31432401 31509645 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMMP2L 7 110663051 111562517 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMMT 2 86143932 86195770 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMP3 15 75639085 75648706 FALSE 1040 -0.419253708499368 37 75468964 75843853 NA 2 NA NA 2 NA 374889 NA 7 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMP4 2 130342225 130347810 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPA1 8 81657961 81686693 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPA2 18 11981025 12030883 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPACT 18 24426616 24453535 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPAD1 8 56957933 56993844 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPDH1 7 128392277 128410252 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPDH2 3 49024325 49029408 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPG1 6 75921115 76072678 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 21 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IMPG2 3 101222546 101320560 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INA 10 103277163 103290351 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INAFM1 19 47274453 47275707 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INAFM2 15 40323664 40326715 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INAVA 1 200891048 200915735 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INCA1 17 4988130 4997610 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INCENP 11 62123973 62153163 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INF2 14 104689606 104722535 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ING1 13 110712736 110723339 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ING2 4 183504994 183511096 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ING3 7 120950749 120977216 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ING4 12 6650280 6663148 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ING5 2 241687085 241729478 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INHA 2 219569162 219575713 TRUE 217 1.54128847807222 98 219570306 219579639 0.593481580287395 12 NA 0.593481580287395 12 NA 9333 NA 2 12 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INHBA 7 41667168 41705834 TRUE 529 2.23632917744056 120 41669198 41690208 0.593481580287395 20 NA 0.593481580287395 20 NA 21010 NA 1 32 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INHBB 2 120346143 120351808 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INHBC 12 57434760 57450828 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INHBE 12 57452323 57459280 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INIP 9 112683926 112718236 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INKA1 3 49803254 49805030 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INKA2 1 111680630 111739424 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INMT 7 30697985 30757602 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INMT-MINDY4 7 30752137 30892081 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 26 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INO80 15 40978880 41116354 FALSE 1013 0.688599016570676 77 40979003 41116187 0.593481580287395 6 NA 0.593481580287395 6 NA 137184 NA 1 42 3 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INO80B 2 74455023 74457960 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INO80B-WBP1 2 74455088 74460884 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INO80C 18 35452230 35497991 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INO80D 2 205993721 206086303 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INO80E 16 29995294 30005793 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP1 2 190343470 190371665 FALSE 197 -0.634190880282039 28 190057538 191008950 NA 2 NA NA 2 NA 951412 NA 9 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP4A 2 98444854 98594390 FALSE 158 0.285935193129522 67 98391970 98577032 0.593443012170704 4 NA 0.593443012170704 4 NA 185062 NA 2 55 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP4B 4 142023160 142847432 TRUE 355 2.14698576919341 118 142018214 142030152 0.593481580287395 19 NA 0.593481580287395 19 NA 11938 NA 1 72 6 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP5A 10 132537820 132783480 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP5B 1 37860697 37947057 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 24 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP5D 2 233059967 233207903 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP5E 9 136428619 136439823 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP5F 10 119726042 119829278 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 25 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP5J 22 31122731 31134696 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPP5K 17 1494571 1516888 FALSE 1135 -0.809094444314198 15 1361226 1614943 0.449390955025597 1 0 0.449390955025597 1 0 253717 1 6 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INPPL1 11 72223701 72239105 TRUE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 30 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INS 11 2159779 2161341 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INS-IGF2 11 2132538 2161209 FALSE 759 1.20431609491167 87 1956412 2149508 0.593481580287395 9 NA 0.593481580287395 9 NA 193096 NA 3 22 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSC 11 15112424 15247208 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSIG1 7 155297776 155310235 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSIG2 2 118088452 118110997 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSL3 19 17816512 17821574 FALSE 1316 -0.361533453731665 41 17787741 17824797 NA 2 NA NA 2 NA 37056 NA 4 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSL4 9 5231419 5235304 FALSE 649 -0.743244922243354 18 5164015 5447729 0.387809979850725 1 0 0.387809979850725 1 0 283714 1 5 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSL5 1 66797741 66801256 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSL6 9 5123880 5185668 FALSE 648 2.42200973294792 123 5126469 5129885 0.593481580287395 23 NA 0.593481580287395 23 NA 3416 NA 2 18 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSM1 20 20368121 20370949 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSM2 14 35534042 35537054 FALSE 972 -0.135983194539659 52 35406876 36513087 0.426118104232275 3 NA 0.426118104232275 3 NA 1106211 NA 5 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSR 19 7112255 7294034 FALSE 1287 1.49319857671265 98 7112254 7294391 0.593481580287395 12 NA 0.593481580287395 12 NA 182137 NA 1 47 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSRR 1 156840063 156859018 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 27 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSYN1 15 73735431 73752747 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSYN2 10 127135426 127196158 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INSYN2B 5 169864264 169980740 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS1 7 1470277 1504367 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 51 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS10 8 19817140 19852083 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS11 1 1311585 1324691 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS12 4 105682627 105895986 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS13 12 26905181 26938326 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS14 15 65578753 65611289 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS2 17 61865367 61928016 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 28 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS3 1 153728067 153774808 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 30 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS4 11 77878720 77994678 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS5 11 62646848 62653302 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS6 13 51354077 51454264 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS6L 23 135520643 135582510 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS7 1 211940399 212035542 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS8 8 94813311 94881746 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 28 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTS9 8 28767661 28890242 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INTU 4 127623271 127726737 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 INVS 9 100099256 100301000 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IP6K1 3 49724294 49786542 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IP6K2 3 48688003 48740353 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IP6K3 6 33721670 33746905 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPCEF1 6 154154496 154356792 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPMK 10 58191517 58267934 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPO11 5 62403972 62628582 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 37 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPO13 1 43946939 43968022 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPO4 14 24180219 24188964 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPO5 13 97953658 98024297 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 28 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPO7 11 9384622 9448126 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPO8 12 30628988 30695986 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPO9 1 201829141 201884294 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 25 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPP 1 45694324 45750650 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IPPK 9 92613184 92670265 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCA1 2 236324147 236507542 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCA1L 7 151190873 151205496 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 20 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCB1 3 121769763 121835079 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCC 1 32205661 32208687 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCD 12 113195441 113221094 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCE 7 2558972 2614734 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 23 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCF1 3 51894876 51903335 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCF2 3 51861629 51863424 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCF3 3 51826883 51830856 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCF5 3 51873721 51875584 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCF6 3 51778561 51779241 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 2 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCG 3 197889075 197960142 FALSE 321 -0.467968190041876 37 197514413 198169785 NA 2 NA NA 2 NA 655372 NA 7 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCH 15 67254800 67502260 FALSE 1034 -0.650081137244343 25 67202833 68183661 0.276933305076759 1 0 0.276933305076759 1 0 980828 1 6 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCJ 3 158962928 159266307 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCJ-SCHIP1 3 158962235 159897366 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCK 16 19716456 19858467 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCM 4 149351903 149896233 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQCN 19 18257097 18274509 FALSE 1320 -0.249880581547498 49 18177171 18281093 0.331933131290263 3 NA 0.331933131290263 3 NA 103922 NA 9 18 8 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQGAP1 15 90388218 90502243 FALSE 1055 -0.813734520669884 15 90388379 90642090 0.449390955025597 1 0 0.449390955025597 1 0 253711 1 2 37 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQGAP2 5 76403249 76708132 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 44 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQGAP3 1 156525405 156572604 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 40 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQSEC1 3 12897220 13283281 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQSEC2 23 53225828 53321350 FALSE 1481 0.620493498053204 75 52862624 53235137 0.593481580287395 6 NA 0.593481580287395 6 NA 372513 NA 8 29 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQSEC3 12 66765 178460 FALSE 827 -0.559311583541843 31 66916 260044 NA 2 NA NA 2 NA 193128 NA 3 22 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IQUB 7 123452400 123535077 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRAK1 23 154010500 154019980 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 15 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRAK1BP1 6 78867472 78946440 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRAK2 3 10164865 10243743 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRAK3 12 66188879 66254622 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRAK4 12 43758944 43789543 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IREB2 15 78437431 78501456 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF1 5 132481609 132490798 TRUE 395 1.22265642557996 87 132446704 132658234 0.593481580287395 9 NA 0.593481580287395 9 NA 211530 NA 5 17 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF2 4 184387713 184474580 FALSE 362 1.85843728269277 109 184385891 184474533 0.593481580287395 15 NA 0.593481580287395 15 NA 88642 NA 1 22 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF2BP1 19 45883607 45886170 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF2BP2 1 234604269 234609525 FALSE 98 2.5616297574559 124 234478660 234609435 0.593481580287395 26 NA 0.593481580287395 26 NA 130775 NA 2 7 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF2BPL 14 77024543 77028699 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF3 19 49659569 49665875 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF4 6 391739 411447 FALSE 424 1.40430880038518 93 292534 411197 0.593481580287395 11 NA 0.593481580287395 11 NA 118663 NA 2 26 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF5 7 128937612 128950035 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF6 1 209785623 209806175 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF7 11 612553 615999 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF8 16 85898803 85922609 TRUE 1124 2.0194115355855 113 85899172 86510878 0.593481580287395 17 NA 0.593481580287395 17 NA 611706 NA 2 21 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRF9 14 24161053 24166565 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRGC 19 43716010 43720021 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRGM 5 150846523 150900736 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRGQ 19 43584369 43596135 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRS1 2 226731317 226799759 FALSE 223 1.72172398362029 103 226731318 226799726 0.593481580287395 14 NA 0.593481580287395 14 NA 68408 NA 1 38 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRS2 13 109752698 109786568 FALSE 958 1.79900315237564 107 109752784 109786176 0.593481580287395 15 NA 0.593481580287395 15 NA 33392 NA 1 29 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRS4 23 108732482 108736409 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRX1 5 3596054 3601403 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRX2 5 2745845 2751662 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRX3 16 54283304 54286763 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRX4 5 1877413 1887236 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRX5 16 54930862 54934485 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IRX6 16 55323760 55330760 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISCA1 9 86264546 86283102 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISCA2 14 74493720 74497106 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISCU 12 108562582 108569384 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISG15 1 1001138 1014540 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISG20 15 88636153 88656483 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISG20L2 1 156721891 156728799 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISL1 5 51383391 51394738 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISL2 15 76336724 76342476 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISLR 15 74173671 74176872 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISLR2 15 74100311 74138540 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISM1 20 13221771 13300651 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISM2 14 77474394 77498850 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISOC1 5 129094751 129114028 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISOC2 19 55452985 55462343 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISPD 7 16087527 16421322 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IST1 16 71845996 71931199 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISX 22 35066136 35087387 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISY1 3 129127415 129161293 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISY1-RAB43 3 129087575 129161036 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ISYNA1 19 18434388 18438301 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITCH 20 34363235 34511393 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITFG1 16 47154387 47464149 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITFG2 12 2812622 2859791 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA1 5 52787896 52959210 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 36 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA10 1 145891208 145910189 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA11 15 68296533 68432162 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 32 6 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA2 5 52989326 53094779 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 30 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA2B 17 44372180 44389505 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 28 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA3 17 50055968 50090481 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 27 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA4 2 181457202 181536187 FALSE 192 1.35255176246553 91 181457377 181539230 0.593481580287395 10 NA 0.593481580287395 10 NA 81853 NA 2 34 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA5 12 54395261 54419460 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA6 2 172427354 172506282 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 26 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA7 12 55684568 55716043 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 33 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA8 10 15513949 15720125 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 31 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGA9 3 37452115 37823514 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 29 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGAD 16 31393312 31426505 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 31 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGAE 17 3714628 3801243 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 41 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGAL 16 30472658 30523185 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 32 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGAM 16 31259967 31332892 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 30 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGAV 2 186590065 186680901 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 31 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGAX 16 31355134 31382997 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB1 10 32900319 33005792 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB1BP1 2 9403475 9423547 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB1BP2 23 71301734 71305371 FALSE 1493 -0.754063044834461 18 71290719 71305121 0.387809979850725 1 0 0.387809979850725 1 0 14402 1 2 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB2 21 44885953 44931989 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB3 17 47253846 47311816 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB3BP 1 63440770 63593721 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB4 17 75721328 75757818 FALSE 1229 -0.166870124513272 52 75622079 75765208 0.426118104232275 3 NA 0.426118104232275 3 NA 143129 NA 7 43 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB5 3 124761948 124901418 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB6 2 160099666 160200313 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB7 12 53191318 53207307 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGB8 7 20330702 20415754 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITGBL1 13 101452593 101720856 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 47 13 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITIH1 3 52777592 52792068 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITIH2 10 7703269 7749520 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITIH3 3 52794768 52809009 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITIH4 3 52812975 52831479 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITIH5 10 7559270 7666998 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 20 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITIH6 23 54748899 54798240 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITK 5 157142933 157255191 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITLN1 1 160876539 160885170 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITLN2 1 160945025 160954799 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITM2A 23 79360384 79367667 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITM2B 13 48232612 48270357 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITM2C 2 230864639 230879248 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPA 20 3208868 3223870 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPK1 14 92936914 93116320 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPKA 15 41493393 41503551 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPKB 1 226631690 226739323 FALSE 94 0.176442903835246 63 226359360 226631718 0.54220702508464 4 NA 0.54220702508464 4 NA 272358 NA 3 31 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPKC 19 40717103 40740860 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPR1 3 4493345 4847840 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 61 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPR2 12 26336515 26833198 FALSE 860 -0.331371321454595 44 25251971 26556343 0.18904974046126 3 NA 0.18904974046126 3 NA 1304372 NA 5 60 8 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPR3 6 33620365 33696574 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 63 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPRID1 7 31514071 31658720 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPRID2 2 181891833 181930738 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPRIP 10 104309698 104338448 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPRIPL1 2 96325331 96330517 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITPRIPL2 16 19113932 19121629 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITSN1 21 33642400 33899861 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 41 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ITSN2 2 24202864 24360714 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 40 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IVD 15 40405795 40435947 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IVL 1 152908545 152911886 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IVNS1ABP 1 185296388 185317329 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IWS1 2 127436207 127526886 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IYD 6 150368892 150405969 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IZUMO1 19 48740852 48746909 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IZUMO1R 11 94305592 94307721 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IZUMO2 19 50152548 50163195 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IZUMO3 9 24542952 24545946 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 IZUMO4 19 2096429 2099593 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JADE1 4 128809623 128875224 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JADE2 5 134524312 134583230 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JADE3 23 46912276 47061242 FALSE 1472 -0.741792499922808 18 45151710 47024874 0.387809979850725 1 0 0.387809979850725 1 0 1873164 1 7 14 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAG1 20 10637684 10673999 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAG2 14 105140981 105168824 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 28 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAGN1 3 9890572 9894349 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAK1 1 64833229 64966504 TRUE 25 0.139724483121887 63 64833405 65072797 0.54220702508464 4 NA 0.54220702508464 4 NA 239392 NA 1 39 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAK2 9 4984390 5128183 FALSE 647 0.0563804304011143 60 4979416 5123020 0.593443012170704 3 NA 0.593443012170704 3 NA 143604 NA 1 40 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAK3 19 17824780 17848071 FALSE 1316 -0.361533453731665 41 17787741 17824797 NA 2 NA NA 2 NA 37056 NA 4 31 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAKMIP1 4 6026203 6200591 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAKMIP2 5 147585439 147782848 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAKMIP3 10 132104671 132184809 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 25 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAM2 21 25639272 25717562 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAM3 11 134068925 134152001 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAML 11 118193740 118225094 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JARID2 6 15246296 15522040 TRUE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 24 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JAZF1 7 27830573 28180743 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JCAD 10 30012800 30115494 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 18 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JCHAIN 4 70655541 70681817 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JDP2 14 75427716 75474111 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JHY 11 122882528 122959798 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JKAMP 14 59484443 59505410 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JMJD1C 10 63167221 63521850 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 44 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JMJD4 1 227730425 227735411 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JMJD6 17 76712832 76726799 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JMJD7 15 41828085 41837581 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JMJD7-PLA2G4B 15 41828095 41848155 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 30 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JMJD8 16 681671 684528 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JMY 5 79236189 79327215 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JOSD1 22 38685543 38701556 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JOSD2 19 50505998 50511353 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JPH1 8 74234700 74321328 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JPH2 20 44111695 44187578 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 12 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JPH3 16 87601835 87698156 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JPH4 14 23568035 23578800 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JPT1 17 75135248 75168281 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JPT2 16 1678256 1702280 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JRK 8 142657460 142681968 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JRKL 11 96389989 96507574 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JSRP1 19 2252252 2269759 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JTB 1 153974269 153977688 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JUN 1 58780788 58784327 FALSE 23 2.36716780765843 121 58780891 58784046 0.593481580287395 23 NA 0.593481580287395 23 NA 3155 NA 1 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JUNB 19 12791496 12793315 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JUND 19 18279760 18281622 FALSE 1320 -0.249880581547498 49 18177171 18281093 0.331933131290263 3 NA 0.331933131290263 3 NA 103922 NA 9 5 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 JUP 17 41754604 41786931 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAAG1 6 24356903 24358284 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KALRN 3 124080023 124726325 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 70 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANK1 9 470291 746106 FALSE 642 -0.969744142087345 10 177800 2007272 0.593443012170704 1 0 0.593443012170704 1 0 1829472 1 8 23 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANK2 19 11164267 11197791 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANK3 19 8322584 8343262 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 15 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANK4 1 62236979 62319414 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 18 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANSL1 17 46029916 46225389 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 21 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANSL1L 2 210021423 210171383 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANSL2 12 48653401 48682238 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KANSL3 2 96593170 96642787 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KARS 16 75627474 75648643 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT14 20 18138118 18188387 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT2A 17 42113108 42121358 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT2B 3 20040023 20154404 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT5 11 65711996 65719604 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT6A 8 41929479 42052026 TRUE 610 1.25122266466447 89 41929731 42049681 0.593481580287395 10 NA 0.593481580287395 10 NA 119950 NA 1 58 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT6B 10 74824927 75032624 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 32 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT7 17 49788555 49835030 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAT8 16 31115754 31131393 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 12 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KATNA1 6 149594873 149648972 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KATNAL1 13 30202630 30307484 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KATNAL2 18 46917492 47102243 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 31 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KATNB1 16 57735730 57757250 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KATNBL1 15 34140674 34210096 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAZALD1 10 101061841 101068131 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KAZN 1 13892792 15118043 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 19 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD11 8 1973878 2006936 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD11-OT1 8 1763888 1958627 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 37 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD12 3 127915232 127987671 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD13 15 65076816 65079939 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 6 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD2 7 32868172 32894131 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD3 11 106051098 106077765 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD4 11 47572197 47579015 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD6 13 41127569 41132746 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD7 13 41189833 41194566 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KBTBD8 3 66998307 67011210 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCMF1 2 84971093 85059472 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA1 12 4909905 4918256 FALSE 834 0.228253228305157 64 4810260 5563608 0.593443012170704 4 NA 0.593443012170704 4 NA 753348 NA 6 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA10 1 110517217 110519175 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA2 1 110519837 110631474 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA3 1 110672465 110675033 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA4 11 30009741 30017023 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA5 12 5043989 5046788 FALSE 834 0.228253228305157 64 4810260 5563608 0.593443012170704 4 NA 0.593443012170704 4 NA 753348 NA 6 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA6 12 4809176 4813412 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 7 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNA7 19 49067418 49072941 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNAB1 3 156037701 156539138 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNAB2 1 5991466 6101193 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNAB3 17 7921859 7929803 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNB1 20 49293394 49484297 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNB2 8 72537391 72938349 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNC1 11 17734774 17856804 FALSE 766 0.163406610939964 63 17714675 17772558 0.54220702508464 4 NA 0.54220702508464 4 NA 57883 NA 2 11 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNC2 12 75040077 75209868 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNC3 19 50311937 50333515 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNC4 1 110211343 110283100 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCND1 23 48961378 48971569 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCND2 7 120273668 120750331 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 11 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCND3 1 111770662 111989155 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNE1 21 34446688 34512275 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNE2 21 34364024 34371389 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNE3 11 74454841 74467729 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNE4 2 223051814 223198399 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNE5 23 109623700 109625172 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNF1 2 10911937 10914225 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNG1 20 51003656 51023129 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNG2 18 79863668 79900184 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNG3 2 42442017 42494097 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNG4 16 84218667 84239750 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH1 1 210676823 211134180 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH2 7 150944961 150978315 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 24 3 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH3 12 49539157 49558308 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH4 17 42156891 42181278 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH5 14 62699454 63102037 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH6 17 63523334 63548977 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 19 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH7 2 162371407 162838730 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNH8 3 19148454 19535646 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNIP1 5 170353487 170736632 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNIP2 10 101825974 101843920 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNIP3 2 95297304 95386083 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNIP4 4 20728616 21948799 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ1 11 128836315 128867373 FALSE 822 1.72197466169248 103 128458828 128840198 0.593481580287395 14 NA 0.593481580287395 14 NA 381370 NA 3 7 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ10 1 159998651 160070483 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ11 11 17385859 17389331 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ12 17 21376197 21419872 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 5 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ13 2 232766464 232776568 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ14 19 48455509 48466980 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ15 21 38155549 38307357 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ16 17 70053429 70135608 FALSE 1223 -0.496089611473999 34 69152090 70130906 NA 2 NA NA 2 NA 978816 NA 4 7 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ18 17 21692523 21704612 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ2 17 70168673 70180048 FALSE 1224 1.32083798162153 90 70132160 72126280 0.593481580287395 10 NA 0.593481580287395 10 NA 1994120 NA 3 5 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ3 2 154698299 154858352 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ4 22 38426327 38455199 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ5 11 128891356 128921035 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 9 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ6 21 37607376 38121345 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ8 12 21764955 21775581 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNJ9 1 160081570 160090563 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK1 1 233614004 233672512 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK10 14 88180103 88326907 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK12 2 47516581 47570939 FALSE 135 0.236810884901957 64 47340190 47906327 0.593443012170704 4 NA 0.593443012170704 4 NA 566137 NA 5 26 6 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK13 14 90061765 90185857 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK15 20 44745780 44752313 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 5 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK16 6 39314698 39322968 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK17 6 39299001 39314553 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK18 10 117197489 117210299 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK2 1 215005775 215237093 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK3 2 26692690 26733420 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK4 11 64291302 64300031 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK5 6 39188973 39229450 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK6 19 38319844 38332076 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK7 11 65592855 65595996 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNK9 8 139600838 139704109 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNMA1 10 76869601 77638369 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 38 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNMB1 5 170374671 170389677 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNMB2 3 178272932 178844429 FALSE 296 1.11990635751143 84 177025548 179245109 0.593481580287395 9 NA 0.593481580287395 9 NA 2219561 NA 6 5 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNMB3 3 179236691 179267002 FALSE 296 1.11990635751143 84 177025548 179245109 0.593481580287395 9 NA 0.593481580287395 9 NA 2219561 NA 6 22 6 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNMB4 12 70366276 70434292 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNN1 19 17951293 18000080 FALSE 1318 -0.547059940466149 31 17859952 18149709 NA 2 NA NA 2 NA 289757 NA 7 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNN2 5 114055545 114496500 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNN3 1 154697455 154870280 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNN4 19 43766533 43781261 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNQ1 11 2444684 2849110 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNQ2 20 63400210 63472677 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNQ3 8 132120858 132481019 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 21 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNQ4 1 40783814 40840452 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNQ5 6 72621792 73198851 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNRG 13 50015254 50020922 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNS1 20 45092310 45101112 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 7 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNS2 8 98427022 98432848 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNS3 2 17877847 18361616 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNT1 9 135702185 135795508 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 36 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNT2 1 196225779 196609225 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 31 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNU1 8 36784324 36936128 FALSE 600 -1.17029510777563 6 33372626 36935533 0.593443012170704 1 0 0.593443012170704 1 0 3562907 1 7 29 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNV1 8 109963645 109975847 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCNV2 9 2717502 2730037 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCP 7 128862451 128910719 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 48 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD1 18 26454910 26657401 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD10 12 109448656 109477544 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD11 17 7351889 7354944 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD12 13 76880166 76886390 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD13 16 29905012 29927035 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD14 11 78015715 78046191 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD15 19 33795933 33815763 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD16 5 144170832 144485686 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD17 22 37051736 37063390 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD18 2 200488952 200519784 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD19 16 67289428 67326763 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD2 17 75032575 75065889 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD20 6 36442767 36491143 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD21 11 78171249 78188822 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD3 1 215567392 215621807 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD4 13 45192853 45194717 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD5 16 2682475 2709030 FALSE 1075 -1.0134415309646 11 2682644 2760334 0.593443012170704 1 0 0.593443012170704 1 0 77690 1 3 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD6 3 58492114 58502360 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD7 7 66628767 66649067 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD8 4 44173909 44448807 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KCTD9 8 25427847 25458476 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDELC1 13 102784281 102799007 FALSE 955 -0.955371764625064 11 102750415 102839799 0.593443012170704 1 0 0.593443012170704 1 0 89384 1 6 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDELC2 11 108472105 108498432 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDELR1 19 48382570 48391553 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDELR2 7 6445953 6484242 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDELR3 22 38468062 38483447 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDF1 1 26949562 26960406 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM1A 1 23019443 23083689 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM1B 6 18155329 18223853 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 16 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM2A 11 67119269 67258087 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 24 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM2B 12 121429097 121581015 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM3A 2 86440647 86492716 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM3B 5 138352596 138437028 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM4A 1 43650158 43705515 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM4B 19 4969113 5153595 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 28 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM4C 9 6720863 7175648 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 25 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM4D 11 94973681 94999518 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM4E 11 95025258 95027596 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM5A 12 280129 389454 FALSE 828 1.19699247404913 87 280113 389176 0.593481580287395 9 NA 0.593481580287395 9 NA 109063 NA 1 52 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM5B 1 202724495 202809470 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 31 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM5C 23 53191321 53225422 TRUE 1481 0.620493498053204 75 52862624 53235137 0.593481580287395 6 NA 0.593481580287395 6 NA 372513 NA 8 41 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM6A 23 44873177 45112602 TRUE 1471 0.975332030495321 82 44844205 45112572 0.593481580287395 8 NA 0.593481580287395 8 NA 268367 NA 2 51 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM6B 17 7839904 7854796 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM7A 7 140084746 140177035 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDM8 16 27203495 27221768 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDR 4 55078259 55125595 FALSE 339 0.611108168288523 75 54298242 55125491 0.593481580287395 6 NA 0.593481580287395 6 NA 827249 NA 3 38 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KDSR 18 63327726 63367510 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KEAP1 19 10486120 10503741 TRUE 1297 1.51618078485133 98 10486135 10514913 0.593481580287395 12 NA 0.593481580287395 12 NA 28778 NA 2 14 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KEL 7 142941114 142962681 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 21 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KERA 12 91050491 91057983 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHDC1 6 73241314 73310365 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 5 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHDC1L 6 73223544 73225770 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHDC3L 6 73362677 73364171 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHDC4 1 155913043 155934400 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHDRBS1 1 32013829 32060850 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHDRBS2 6 61679960 62286227 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHDRBS3 8 135457457 135656722 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHK 2 27086747 27100772 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 10 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHNYN 14 24429286 24441834 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KHSRP 19 6413348 6424794 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0040 1 175156987 175192999 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0100 17 28614440 28645454 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 46 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0232 4 6781375 6884170 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0319 6 24544104 24646155 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 25 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0319L 1 35433490 35557950 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0355 19 34254537 34355586 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0391 14 35121846 35277614 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0408 6 127440343 127459391 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0513 16 85027751 85094230 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0556 16 27550133 27780369 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 36 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0586 14 58427385 58551289 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 35 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0753 17 6578148 6640927 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0825 5 94152966 94618597 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0895 7 36324221 36390125 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0895L 16 67175602 67184040 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA0930 22 45190338 45240769 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1024 15 79432516 79472290 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1024L 5 129748079 129766732 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1109 4 122152333 122362758 FALSE 352 -0.689691915417127 25 121839741 122741842 0.276933305076759 1 0 0.276933305076759 1 0 902101 1 7 108 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1143 3 44737661 44761662 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1147 7 141656728 141702153 FALSE 567 -0.346454323038498 44 141006475 141708994 0.18904974046126 3 NA 0.18904974046126 3 NA 702519 NA 5 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1191 5 176346061 176361968 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1210 23 119078635 119150579 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 26 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1211 4 56049073 56328625 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 18 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1211L 2 98793846 98936259 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1217 10 23694746 24547848 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 35 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1257 3 128909866 129002690 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 26 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1324 1 109113679 109206781 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 25 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1324L 7 86876906 87059699 FALSE 540 2.07770828746275 117 86644072 86897476 0.593481580287395 18 NA 0.593481580287395 18 NA 253404 NA 2 25 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1328 18 36829106 37232172 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 13 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1522 1 32741885 32774970 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1549 7 138831381 138981318 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 33 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1549L 11 33376466 33674102 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 32 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1551 12 31959370 31993107 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 22 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1586 6 57046532 57055239 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 11 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1614 1 180913154 180951614 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1671 22 24952730 25197448 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1755 20 38210488 38260772 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 22 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1841 2 61065871 61138034 FALSE 142 -0.73704227505101 21 60942397 61470646 0.328777186374237 1 0 0.328777186374237 1 0 528249 1 5 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA1958 9 112486847 112669397 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA2012 2 202073289 202205203 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 24 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA2013 1 11919591 11926428 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIAA2026 9 5881596 6007901 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 34 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIDINS220 2 8721081 8837630 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 37 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF11 10 92593286 92655395 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF12 9 114086126 114099291 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF13A 6 17759183 17987623 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 45 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF13B 8 29067279 29263124 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 44 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF14 1 200551497 200620734 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 36 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF15 3 44761717 44873376 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 40 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF16B 20 16272104 16573434 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 34 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF17 1 20664014 20718017 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF18A 11 28020620 28108308 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF18B 17 44924709 44947711 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 18 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF19 17 74326210 74355820 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 23 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF1A 2 240713761 240821036 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 53 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF1B 1 10210805 10381603 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 52 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF1BP 10 68988721 69043544 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF1C 17 4997948 5028401 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF20A 5 138178719 138187715 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF20B 10 89701610 89774939 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 39 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF21A 12 39293228 39443390 FALSE 863 -0.717747500660561 19 38323881 40466037 0.593443012170704 1 0 0.593443012170704 1 0 2142156 1 8 44 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF21B 1 200969390 201023700 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 40 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF22 16 29790719 29805385 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF23 15 69414246 69448427 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 25 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF24 9 34252381 34311371 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF25 6 167996241 168045089 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF26A 14 104138723 104180894 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 32 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF26B 1 245154985 245709431 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF27 9 83836698 83921465 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF2A 5 62306162 62537249 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 56 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF2B 17 53822901 53825213 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 8 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF2C 1 44739818 44767767 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 22 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF3A 5 132692628 132737638 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF3B 20 32277664 32335011 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF3C 2 25926596 25982749 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF4A 23 70290090 70420832 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 30 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF4B 5 155013755 155018132 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF5A 12 57549998 57586632 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF5B 10 32009010 32056431 FALSE 715 1.39573907966957 93 31908368 32056287 0.593481580287395 11 NA 0.593481580287395 11 NA 147919 NA 2 58 7 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF5C 2 148875250 149026759 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF6 6 39329990 39725405 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF7 15 89608789 89655451 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 38 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIF9 3 47228026 47283451 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIFAP3 1 169921326 170085208 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIFC1 6 33391536 33409924 FALSE 459 -0.394054757052465 41 33323048 33443970 NA 2 NA NA 2 NA 120922 NA 5 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIFC2 8 144466043 144474202 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIFC3 16 57758217 57863053 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIN 10 7750962 7787981 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIR2DL1 19 54769811 54784322 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 8 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIR2DL3 19 54738515 54753052 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 6 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIR2DL4 19 54803535 54814517 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIR3DL1 19 54816468 54830778 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIR3DL2 19 54850443 54867207 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIR3DL3 19 54724479 54736536 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIRREL1 1 157993273 158100262 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIRREL2 19 35855861 35867109 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIRREL3 11 126423359 127003460 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KISS1 1 204190341 204196486 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KISS1R 19 917287 921015 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIT 4 54657918 54740715 FALSE 339 0.611108168288523 75 54298242 55125491 0.593481580287395 6 NA 0.593481580287395 6 NA 827249 NA 3 47 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KITLG 12 88492793 88580851 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KIZ 20 21125983 21246622 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KL 13 33016433 33066145 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLB 4 39406853 39451536 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLC1 14 103561896 103714249 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 43 5 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLC2 11 66257294 66267860 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLC3 19 45333434 45351520 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 18 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLC4 6 43040777 43075099 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 50 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF1 19 12884422 12887199 FALSE 1303 -0.374175356398884 41 12847883 12933687 NA 2 NA NA 2 NA 85804 NA 7 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF10 8 102648779 102655902 FALSE 631 1.66601826093658 102 102252345 102652000 0.593481580287395 13 NA 0.593481580287395 13 NA 399655 NA 3 8 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF11 2 10042849 10054836 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF12 13 73686089 73995056 FALSE 949 -0.79745272696754 18 72783611 75800864 0.387809979850725 1 0 0.387809979850725 1 0 3017253 1 7 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF13 15 31326855 31435665 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF14 7 130731235 130734176 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF15 3 126342635 126357442 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF16 19 1852399 1863568 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF17 1 44118850 44135140 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF18 1 44137821 44141631 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 12 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF2 19 16324817 16327874 TRUE 1314 2.574967710997 124 16325012 16328710 0.593481580287395 26 NA 0.593481580287395 26 NA 3698 NA 1 9 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF3 4 38664196 38701042 FALSE 331 0.370343428243434 68 38662638 38828899 0.389403197422789 6 NA 0.389403197422789 6 NA 166261 NA 4 32 3 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF4 9 107484852 107490482 TRUE 687 0.600951046985776 75 107481053 108863518 0.593481580287395 6 NA 0.593481580287395 6 NA 1382465 NA 3 17 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF5 13 73054976 73077542 FALSE 949 -0.79745272696754 18 72783611 75800864 0.387809979850725 1 0 0.387809979850725 1 0 3017253 1 7 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF6 10 3775996 3785281 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF7 2 207074137 207167267 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF8 23 56232421 56287889 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLF9 9 70384597 70414624 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC1 14 49693105 49753152 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC10 7 130070510 130135720 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC2 14 49767608 49786385 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC3 6 43014103 43021298 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC4 16 87696485 87765992 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 13 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC7A 1 18480982 18486126 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC7B 22 50545891 50551023 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 13 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC8A 1 205336065 205357090 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC8B 3 49171611 49176486 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHDC9 1 161098361 161100346 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL1 13 69700594 70108493 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL10 17 41835685 41848384 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL11 17 41853545 41865431 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL12 1 202891100 202928636 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL13 23 117897813 118117340 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL14 18 32672671 32773062 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL15 23 23983720 24027186 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL17 1 960587 965715 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL18 3 47282917 47346816 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL2 4 165207618 165323156 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL20 1 173714941 173786702 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL21 1 6590724 6614607 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL22 22 20441519 20495883 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL23 2 169694488 169776989 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL24 3 183635568 183684477 FALSE 303 1.77822050869176 105 183487678 183651235 0.593481580287395 15 NA 0.593481580287395 15 NA 163557 NA 2 10 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL25 15 85759323 85795030 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL26 19 18636965 18671714 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL28 14 44924319 45042322 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL29 2 23385217 23708611 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL3 5 137617500 137736090 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL30 2 238138722 238152947 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL31 6 53647901 53665708 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL32 6 96924620 97140754 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL33 14 20425852 20436158 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL34 23 21654690 21658330 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL35 11 75422394 75430629 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL36 16 84648525 84667686 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL38 8 123645527 123652950 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL4 23 87517749 87670050 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL40 3 42685519 42692544 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL41 2 169509702 169526262 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL42 12 27780020 27803040 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL5 4 39045039 39126857 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL6 3 183487531 183555689 FALSE 303 1.77822050869176 105 183487678 183651235 0.593481580287395 15 NA 0.593481580287395 15 NA 163557 NA 2 26 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL7 7 23105758 23177914 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL8 4 87160103 87240314 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLHL9 9 21329671 21335380 FALSE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK1 19 50819148 50823787 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK10 19 51012739 51020175 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK11 19 51022216 51028039 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK12 19 51029092 51035230 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK13 19 51056206 51065114 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK14 19 51077495 51084245 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK15 19 50825289 50837213 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK2 19 50861568 50880567 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK3 19 50854915 50860764 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK4 19 50906352 50910738 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK5 19 50943303 50953093 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK6 19 50958631 50969673 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK7 19 50976482 50984099 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK8 19 50996007 51002711 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLK9 19 51003111 51009634 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLKB1 4 186208979 186258471 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLLN 10 87859161 87863437 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 6 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRB1 12 9594551 9607886 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRC1 12 10442264 10454685 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRC2 12 10426854 10442300 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 7 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRC3 12 10412312 10420595 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRC4 12 10407382 10409757 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRC4-KLRK1 12 10372353 10410146 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRD1 12 10226058 10329600 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRF1 12 9827481 9845007 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRF2 12 9881489 9895833 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRG1 12 8950044 9010760 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRG2 7 139452690 139483712 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 8 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KLRK1 12 10372353 10391874 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMO 1 241532134 241595642 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT2A 11 118436464 118526832 TRUE 816 1.82295351720342 107 118436511 118526758 0.593481580287395 15 NA 0.593481580287395 15 NA 90247 NA 2 124 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT2B 19 35718019 35738878 TRUE 1330 0.0850617688576515 61 35715038 35719554 0.315195151543259 5 NA 0.315195151543259 5 NA 4516 NA 2 56 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT2C 7 152134922 152436005 TRUE 578 2.56636743205036 124 152135146 152138952 0.593481580287395 26 NA 0.593481580287395 26 NA 3806 NA 1 137 10 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT2D 12 49018975 49059774 TRUE 873 1.77047131181169 105 49019056 49060717 0.593481580287395 14 NA 0.593481580287395 14 NA 41661 NA 1 106 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT2E 7 105014179 105114361 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 38 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT5A 12 123383773 123409358 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT5B 11 68154863 68213828 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KMT5C 19 55339853 55348120 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KNCN 1 46545644 46551527 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KNDC1 10 133160447 133226412 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 40 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KNG1 3 186717276 186744410 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KNL1 15 40594020 40664342 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 44 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KNOP1 16 19701934 19718235 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KNSTRN 15 40382721 40394246 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KNTC1 12 122527246 122626396 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 63 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNA1 3 122421949 122514945 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNA2 17 68035519 68046842 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNA3 13 49699307 49792921 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNA4 3 160494995 160565588 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNA5 6 116681187 116741866 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNA6 1 32108038 32176568 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNA7 7 99173574 99207506 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPNB1 17 47649476 47685505 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPRP 1 152759561 152762052 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KPTN 19 47475144 47484268 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRAS 12 25204789 25250936 FALSE 859 1.90548292081574 111 25200284 25250766 0.593481580287395 16 NA 0.593481580287395 16 NA 50482 NA 2 44 11 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRBA1 7 149714781 149734575 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRBA2 17 8356902 8376711 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRBOX1 3 42809483 42942792 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRBOX4 23 46446857 46497422 FALSE 1472 -0.741792499922808 18 45151710 47024874 0.387809979850725 1 0 0.387809979850725 1 0 1873164 1 7 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRCC1 2 88027205 88055729 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KREMEN1 22 29073078 29168333 FALSE 1429 -0.86803144327003 13 29058821 29265673 0.522719719214577 1 0 0.522719719214577 1 0 206852 1 4 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KREMEN2 16 2963944 2968383 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRI1 19 10553078 10566037 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 18 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRIT1 7 92198969 92246166 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRR1 12 75490861 75511636 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 13 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT1 12 52674736 52680407 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 12 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT10 17 40818117 40822595 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT12 17 40860943 40867224 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT13 17 41500981 41505705 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT14 17 41582279 41586921 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT15 17 41513743 41522529 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT16 17 41609778 41615899 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT17 17 41619441 41624842 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT18 12 52948871 52952901 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT19 17 41523617 41528308 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT2 12 52644558 52652164 FALSE 879 -0.966263404147956 11 52567092 52651567 0.593443012170704 1 0 0.593443012170704 1 0 84475 1 4 12 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT20 17 40875941 40885227 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT222 17 40654665 40665181 FALSE 1183 -0.681015276012904 25 40656531 40781164 0.276933305076759 1 0 0.276933305076759 1 0 124633 1 6 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT23 17 40922696 40937634 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 9 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT24 17 40697991 40703750 FALSE 1183 -0.681015276012904 25 40656531 40781164 0.276933305076759 1 0 0.276933305076759 1 0 124633 1 6 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT25 17 40748021 40755332 FALSE 1183 -0.681015276012904 25 40656531 40781164 0.276933305076759 1 0 0.276933305076759 1 0 124633 1 6 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT26 17 40766238 40772162 FALSE 1183 -0.681015276012904 25 40656531 40781164 0.276933305076759 1 0 0.276933305076759 1 0 124633 1 6 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT27 17 40776808 40782534 FALSE 1183 -0.681015276012904 25 40656531 40781164 0.276933305076759 1 0 0.276933305076759 1 0 124633 1 6 9 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT28 17 40792203 40799959 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT3 12 52789685 52796117 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT31 17 41393724 41397592 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT32 17 41459811 41467429 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 4 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT33A 17 41346092 41350812 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT33B 17 41363494 41369800 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT34 17 41377650 41382403 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT35 17 41476689 41481140 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT36 17 41486136 41492546 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT37 17 41420753 41424523 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT38 17 41436446 41440921 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT39 17 40958417 40966892 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 8 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT4 12 52806549 52814551 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT40 17 40977716 40987135 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 9 8 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT5 12 52514575 52520687 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT6A 12 52487174 52493257 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 11 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT6B 12 52446651 52452126 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 12 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT6C 12 52468516 52473785 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 12 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT7 12 52232520 52252186 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT71 12 52543909 52553147 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT72 12 52585589 52601538 FALSE 879 -0.966263404147956 11 52567092 52651567 0.593443012170704 1 0 0.593443012170704 1 0 84475 1 4 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT73 12 52607570 52618559 FALSE 879 -0.966263404147956 11 52567092 52651567 0.593443012170704 1 0 0.593443012170704 1 0 84475 1 4 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT74 12 52565782 52573825 FALSE 879 -0.966263404147956 11 52567092 52651567 0.593443012170704 1 0 0.593443012170704 1 0 84475 1 4 12 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT75 12 52424070 52434525 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT76 12 52768155 52777345 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT77 12 52689626 52703463 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 13 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT78 12 52837804 52849092 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT79 12 52821410 52834295 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 12 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT8 12 52897187 52949954 FALSE 880 -0.389460112884905 41 52652027 52898796 NA 2 NA NA 2 NA 246769 NA 9 13 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT80 12 52168996 52192000 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT81 12 52285913 52291534 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 10 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT82 12 52393931 52406355 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 11 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT83 12 52314301 52321398 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 11 7 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT84 12 52377812 52385652 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 13 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT85 12 52360006 52367481 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT86 12 52249300 52309163 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 19 8 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRT9 17 41565841 41572058 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP1-1 17 41040559 41041461 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP1-3 17 41033884 41034855 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP1-4 17 41029697 41030104 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP1-5 17 41026026 41027202 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-1 21 44538981 44540195 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-10 21 44637356 44638455 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 3 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-11 21 44646414 44647650 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-12 21 44697172 44698044 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-2 21 44550357 44551505 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-3 21 44557790 44558760 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-4 21 44573724 44638284 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 30 15 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-5 21 44579455 44580604 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-6 21 44591268 44592505 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 5 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-7 21 44600597 44602174 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 5 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-8 21 44612079 44612954 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP10-9 21 44627123 44628293 FALSE 1412 -0.0296020591653231 56 44539388 44627287 0.593443012170704 3 NA 0.593443012170704 3 NA 87899 NA 10 4 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP11-1 21 30880644 30881555 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP12-1 21 44681576 44682163 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP12-2 21 44666189 44666927 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP12-3 21 44657932 44658341 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP12-4 21 44654213 44654659 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP13-1 21 30396074 30396822 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP13-2 21 30371391 30372257 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP13-3 21 30425265 30425968 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP13-4 21 30430230 30431026 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP15-1 21 30440275 30440945 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP16-1 17 41307700 41309253 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP17-1 17 41314917 41315695 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-1 21 30479699 30480344 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-2 21 30487057 30487436 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-3 21 30491464 30491985 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-4 21 30496824 30497133 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-5 21 30501657 30502117 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-6 21 30541535 30541864 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-7 21 30560875 30561314 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP19-8 21 31038159 31038476 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP2-1 17 41046541 41047316 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP2-2 17 41054498 41055230 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 1 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP2-3 17 41059240 41060114 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP2-4 17 41065116 41065879 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP20-1 21 30616425 30616699 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP20-2 21 30635236 30635619 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP20-4 21 30620627 30620850 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP21-1 21 30754830 30755428 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP21-2 21 30746794 30747233 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP21-3 21 30718525 30718777 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP22-1 21 30601087 30601382 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP22-2 21 30590105 30590397 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP23-1 21 30348399 30348609 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP24-1 21 30281309 30282958 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP25-1 21 30289145 30289514 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP26-1 21 30319124 30320316 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP27-1 21 30337013 30337694 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP29-1 17 41301826 41302851 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP3-1 17 41008521 41019324 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP3-2 17 40999193 40999894 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP3-3 17 40993430 40994133 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-1 17 41184102 41185342 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-11 17 41117181 41118360 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-12 17 41123091 41124167 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-2 17 41177446 41178208 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-3 17 41167231 41168194 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-4 17 41159651 41160731 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-5 17 41148924 41149802 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-6 17 41139433 41140487 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-7 17 41084150 41085141 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-8 17 41096981 41098141 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP4-9 17 41105332 41106488 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-1 11 1584342 1585283 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-10 11 71565563 71566738 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 3 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-11 11 71579714 71603353 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-2 11 1597177 1598294 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-3 11 1607565 1608463 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-4 11 1620958 1622138 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-5 11 1629775 1630707 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 3 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-6 11 1697195 1697755 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-7 11 71527267 71528674 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-8 11 71538025 71539207 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP5-9 11 71548418 71549553 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP6-1 21 30613431 30613930 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP6-2 21 30598590 30598902 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP6-3 21 30592440 30593075 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP7-1 21 30829039 30829759 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP8-1 21 30812697 30813252 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-1 17 41189887 41190639 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-2 17 41226648 41227652 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-3 17 41232463 41233454 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-4 17 41249687 41250653 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-6 17 41265339 41266641 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-7 17 41275659 41276697 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-8 17 41238045 41239004 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTAP9-9 17 41255384 41256364 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTCAP2 1 155169408 155173475 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTCAP3 2 27442366 27446481 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KRTDAP 19 35487324 35495558 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KSR1 17 27456470 27626438 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KSR2 12 117453012 117968983 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 23 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KTI12 1 52032103 52033816 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KTN1 14 55559072 55701526 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 45 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KXD1 19 18557762 18569387 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KY 3 134603138 134651636 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KYAT1 9 128832942 128882494 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KYAT3 1 88935773 88992953 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 KYNU 2 142877498 143055832 FALSE 177 -0.992611125625102 11 142885392 144208701 0.593443012170704 1 0 0.593443012170704 1 0 1323309 1 3 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L1CAM 23 153861514 153886174 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 29 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L1TD1 1 62194831 62212328 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L2HGDH 14 50237563 50312548 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L34079.1 19 43554692 43593036 FALSE 1344 1.18389297309155 87 43543508 43575535 0.593481580287395 9 NA 0.593481580287395 9 NA 32027 NA 2 12 3 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L3HYPDH 14 59460363 59484430 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L3MBTL1 20 43489442 43550950 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L3MBTL2 22 41205205 41231271 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L3MBTL3 6 130013699 130141451 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 L3MBTL4 18 5954706 6415237 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LACC1 13 43879284 43893932 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LACRT 12 54630811 54634895 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LACTB 15 63121800 63142061 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LACTB2 8 70635318 70669174 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LACTBL1 1 22953043 22965338 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAD1 1 201373244 201399915 FALSE 80 -0.765421999083083 18 201214235 201384771 0.387809979850725 1 0 0.387809979850725 1 0 170536 1 4 13 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAG3 12 6772512 6778455 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 12 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAGE3 23 154477769 154479257 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAIR1 19 54351384 54370558 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAIR2 19 54497879 54510687 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LALBA 12 48567684 48570066 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMA1 18 6941744 7117814 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 66 9 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMA2 6 128883141 129516569 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 66 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMA3 18 23689443 23956222 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 80 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMA4 6 112108760 112254939 FALSE 482 -0.684947044489322 25 112071952 113860176 0.276933305076759 1 0 0.276933305076759 1 0 1788224 1 6 39 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMA5 20 62307955 62367312 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 87 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMB1 7 107923799 108003255 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 37 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMB2 3 49121114 49133118 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 34 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMB3 1 209614870 209652466 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 26 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMB4 7 108023548 108130356 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 37 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMC1 1 183023460 183145592 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 31 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMC2 1 183186238 183244900 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMC3 9 131009082 131094473 FALSE 698 -0.692803749032214 25 130893485 131120247 0.276933305076759 1 0 0.276933305076759 1 0 226762 1 4 36 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMP1 13 113297241 113323672 FALSE 960 0.280824540945925 67 113297479 113407354 0.593443012170704 4 NA 0.593443012170704 4 NA 109875 NA 3 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMP2 23 120427827 120469365 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMP3 3 183122213 183163839 FALSE 302 -0.798113066557288 18 183015527 183427874 0.387809979850725 1 0 0.387809979850725 1 0 412347 1 4 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMP5 20 9514358 9530524 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMTOR1 11 72085895 72103387 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMTOR2 1 156054752 156058510 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMTOR3 4 99878336 99894490 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMTOR4 7 100148907 100155944 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 7 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAMTOR5 1 110401249 110407942 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LANCL1 2 210431249 210477652 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LANCL2 7 55365448 55433742 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LANCL3 23 37571569 37684463 FALSE 1465 0.0749747101580098 60 36236724 37572322 0.593443012170704 3 NA 0.593443012170704 3 NA 1335598 NA 5 8 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAP3 4 17577192 17607972 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAPTM4A 2 20032650 20052028 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAPTM4B 8 97775057 97853013 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAPTM5 1 30732469 30757820 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARGE1 22 33162226 33922841 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARGE2 11 45921621 45929096 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARP1 5 154712902 154817607 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARP1B 4 128061268 128222931 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARP4 12 50392383 50480004 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARP4B 10 806914 931705 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARP6 15 70829130 70854159 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARP7 4 112636964 112657592 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARS 5 146113038 146182660 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 31 11 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LARS2 3 45388506 45549421 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAS1L 23 65512582 65534775 FALSE 1487 -0.50792792543453 34 64268792 66605144 NA 2 NA NA 2 NA 2336352 NA 8 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LASP1 17 38869859 38921770 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAT 16 28984826 28990783 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAT2 7 74199652 74229834 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LATS1 6 149658153 149718256 TRUE 501 1.44143235457538 95 149658107 149727219 0.593481580287395 11 NA 0.593481580287395 11 NA 69112 NA 2 37 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LATS2 13 20973032 21061547 TRUE 933 1.75820910007584 105 20973217 21061446 0.593481580287395 14 NA 0.593481580287395 14 NA 88229 NA 1 32 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAX1 1 203765176 203776233 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LAYN 11 111540280 111561745 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LBH 2 30231369 30323730 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LBHD1 11 62662817 62672255 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 14 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LBHD2 14 103084210 103090027 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LBP 20 38346356 38377023 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LBR 1 225401502 225428925 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LBX1 10 101226195 101229794 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LBX2 2 74497517 74503316 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCA5 6 79484991 79537458 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCA5L 21 39405844 39445805 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCAT 16 67939750 67944131 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE1A 1 152827473 152827894 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE1B 1 152811971 152813109 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE1C 1 152804835 152806628 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE1E 1 152786214 152788426 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE1F 1 152776372 152776728 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE2A 1 152698364 152699442 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE2B 1 152686123 152687401 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE2C 1 152675295 152676574 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE2D 1 152663396 152664659 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE3A 1 152622834 152623103 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE3D 1 152579381 152580504 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE3E 1 152565654 152566772 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE4A 1 152708160 152709491 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE5A 1 152510844 152512177 FALSE 59 -0.456717733514463 35 152217976 152623089 1 2 1 1 2 1 405113 1 11 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCE6A 1 152842868 152843983 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCK 1 32251239 32286165 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCLAT1 2 30447226 30644225 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCMT1 16 25111729 25178231 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCMT2 15 43323649 43330605 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN1 9 135521438 135526532 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN10 9 136738167 136743356 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN12 9 136949551 136955497 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN15 9 136759634 136766255 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN2 9 128149071 128153455 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN6 9 136744011 136748528 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN8 9 136754386 136758543 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCN9 9 135663322 135666422 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCNL1 9 136981904 136986410 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCOR 10 96832282 96995959 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCORL 4 17841199 18021876 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCP1 13 46125920 46211871 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCP2 5 170246237 170298227 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 21 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCT 2 135787840 135837180 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 31 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LCTL 15 66547179 66565979 FALSE 1032 -0.613130187479146 28 66494532 66716482 NA 2 NA NA 2 NA 221950 NA 5 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDAH 2 20684014 20823130 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDB1 10 102107560 102120453 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDB2 4 16501541 16898809 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDB3 10 86668449 86736068 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDHA 11 18394388 18408425 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDHAL6A 11 18455824 18479600 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDHAL6B 15 59206823 59208515 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDHB 12 21635342 21757857 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDHC 11 18412307 18452058 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDHD 16 75111860 75116771 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDLR 19 11089362 11133816 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 20 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDLRAD1 1 54007299 54018186 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDLRAD2 1 21812265 21825221 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDLRAD3 11 35943981 36232136 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDLRAD4 18 13217498 13652755 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDLRAP1 1 25543580 25568886 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LDOC1 23 141175745 141177125 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEAP2 5 132872322 132875046 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LECT2 5 135922279 135955034 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEF1 4 108047545 108168956 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEFTY1 1 225886282 225911382 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEFTY2 1 225936598 225941489 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEKR1 3 156825481 157046129 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LELP1 1 153203443 153205120 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEMD1 1 205381378 205457091 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEMD2 6 33771202 33789136 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEMD3 12 65169571 65248327 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LENEP 1 154993586 154994315 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LENG1 19 54155161 54159882 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LENG8 19 54448887 54462037 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 19 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LENG9 19 54461796 54463711 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEO1 15 51938025 51971806 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 16 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEP 7 128241284 128257628 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEPR 1 65420652 65641559 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEPROT 1 65420587 65436007 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEPROTL1 8 30095398 30177208 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LETM1 4 1811479 1856247 FALSE 324 -0.890136228440778 13 1808795 1893896 0.522719719214577 1 0 0.522719719214577 1 0 85101 1 3 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LETM2 8 38386207 38409527 FALSE 606 0.283910724486734 67 38270686 38427654 0.593443012170704 4 NA 0.593443012170704 4 NA 156968 NA 4 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LETMD1 12 51047962 51060424 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEUTX 19 39776595 39786167 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LEXM 1 54806063 54842252 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LFNG 7 2512529 2529177 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS1 22 37675608 37679806 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS12 11 63506084 63516774 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS13 19 39602501 39607476 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS14 19 39704306 39709444 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS16 19 39655894 39660647 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS2 22 37570246 37582616 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS3 14 55124110 55145413 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS3BP 17 78971238 78980109 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS4 19 38801671 38813364 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS7 19 38770971 38773492 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS7B 19 38789211 38791749 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS8 1 236518000 236552981 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS9 17 27629798 27649560 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS9B 17 20449395 20467539 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALS9C 17 18476737 18494945 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 10 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGALSL 2 64453969 64461381 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGI1 10 93757809 93806272 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGI2 4 24998847 25030879 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGI3 8 22146825 22157084 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGI4 19 35124513 35142451 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGMN 14 92703807 92748702 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGR4 11 27365961 27472775 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGR5 12 71439770 71586310 FALSE 900 1.15331444832137 85 71439901 71586339 0.593481580287395 9 NA 0.593481580287395 9 NA 146438 NA 2 29 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGR6 1 202193901 202319781 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LGSN 6 63275951 63319977 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHB 19 49015980 49017091 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHCGR 2 48686775 48755730 FALSE 136 -0.842193967001169 15 48346226 48725689 0.449390955025597 1 0 0.449390955025597 1 0 379463 1 7 15 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHFPL1 23 112630648 112680054 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHFPL2 5 78485215 78770021 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHFPL3 7 104328656 104907232 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHFPL4 3 9498361 9553802 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHFPL5 6 35805293 35833874 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHFPL6 13 39209116 39603528 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHPP 10 124461834 124617888 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX1 17 36936785 36944612 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX2 9 124001670 124033301 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX3 9 136196250 136205128 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX4 1 180230286 180278982 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX5 12 113462034 113472280 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX6 9 122202577 122229626 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX8 1 75128434 75161533 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LHX9 1 197911902 197935478 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIAS 4 39458587 39485109 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIF 22 30240447 30246851 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIFR 5 38474963 38608354 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 23 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIG1 19 48115445 48170603 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 28 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIG3 17 34980494 35009743 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 23 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIG4 13 108207439 108218368 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRA1 19 54593582 54602090 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRA2 19 54572920 54590287 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRA4 19 54333185 54339150 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRA5 19 54307070 54313139 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRA6 19 54236592 54242791 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRB1 19 54617158 54637528 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 6 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRB2 19 54273821 54281184 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRB3 19 54216278 54223506 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 17 7 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRB4 19 54643889 54670359 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LILRB5 19 54249431 54257301 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIM2 19 51379909 51387960 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMA1 12 50175788 50283546 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMCH1 4 41359607 41700044 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 39 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMD1 3 45555394 45686338 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMD2 17 63695902 63701172 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIME1 20 63736283 63739103 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMK1 7 74082933 74122525 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMK2 22 31212239 31280080 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMS1 2 108534355 108687246 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIMS2 2 127638381 127681786 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN28A 1 26410778 26429722 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN28B 6 104936616 105083332 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN37 19 35748361 35754519 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN52 14 74084796 74201235 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN54 4 82909973 83012926 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN7A 12 80792520 80937925 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN7B 19 49114324 49118460 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN7C 11 27494576 27506773 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIN9 1 226231149 226309869 FALSE 93 -1.06063729750457 9 226152590 226309117 0.593443012170704 1 0 0.593443012170704 1 0 156527 1 3 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LINC02210-CRHR1 17 45620344 45835826 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LINGO1 15 77613027 77820900 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LINGO2 9 27948078 28670286 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LINGO3 19 2289784 2292024 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LINGO4 1 151800264 151806154 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LINS1 15 100559369 100603230 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPA 10 89213569 89414557 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 40 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPC 15 58410569 58569843 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPE 19 42401507 42427426 FALSE 1342 -0.424583186963262 37 42297126 42410557 NA 2 NA NA 2 NA 113431 NA 6 18 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPF 10 88664441 88678814 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPG 18 49560699 49599182 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPH 3 185506262 185552613 FALSE 308 -0.794389979193731 18 185491580 185937798 0.387809979850725 1 0 0.387809979850725 1 0 446218 1 5 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPI 21 14108813 14210891 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPJ 10 88586753 88606976 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPK 10 88724544 88752786 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPM 10 88802730 88820546 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPN 10 88761406 88778242 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPT1 2 99154955 99163157 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIPT2 11 74491712 74493733 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LITAF 16 11547722 11636381 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIX1 5 97091867 97142872 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LIX1L 1 145933423 145958001 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LKAAEAR1 20 64083380 64084359 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LLCFC1 7 142939343 142940868 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LLGL1 17 18225587 18244875 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 25 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LLGL2 17 75525080 75575208 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 26 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LLPH 12 66116555 66130768 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMAN1 18 59327823 59359962 FALSE 1261 -0.626771039159971 28 58934445 59897059 NA 2 NA NA 2 NA 962614 NA 7 14 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMAN1L 15 74812716 74825758 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMAN2 5 177331562 177351852 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMAN2L 2 96705929 96740064 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMBR1 7 156668946 156893230 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMBR1L 12 49096551 49110900 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMBRD1 6 69675793 69867236 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMBRD2 5 36098412 36151961 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 17 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMCD1 3 8501707 8574673 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMF1 16 853634 981318 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMF2 22 50502949 50507691 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMLN 3 197960200 198043720 FALSE 321 -0.467968190041876 37 197514413 198169785 NA 2 NA NA 2 NA 655372 NA 7 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMLN2 14 23099065 23104992 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMNA 1 156082573 156140089 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 18 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMNB1 5 126776623 126837020 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 12 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMNB2 19 2427638 2456996 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMNTD1 12 25409307 25648579 FALSE 860 -0.331371321454595 44 25251971 26556343 0.18904974046126 3 NA 0.18904974046126 3 NA 1304372 NA 5 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMNTD2 11 554855 560779 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMO1 11 8224304 8268716 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMO2 11 33858576 33892289 FALSE 772 1.61321508785135 100 33858620 33892086 0.593481580287395 13 NA 0.593481580287395 13 NA 33466 NA 1 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMO3 12 16548373 16610594 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMO4 1 87328468 87348923 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMO7 13 75620434 75859870 FALSE 949 -0.79745272696754 18 72783611 75800864 0.387809979850725 1 0 0.387809979850725 1 0 3017253 1 7 42 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMOD1 1 201896452 201946588 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMOD2 7 123655807 123664290 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMOD3 3 69106872 69123032 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMTK2 7 98106885 98209633 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 25 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMTK3 19 48485271 48513935 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMX1A 1 165201867 165356715 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LMX1B 9 126614443 126701032 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LNP1 3 100401193 100456319 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LNPEP 5 96935394 97037515 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LNPK 2 175923892 176002839 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LNX1 4 53459301 53701405 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LNX2 13 27545911 27620404 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LONP1 19 5691834 5720572 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LONP2 16 48244296 48363122 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LONRF1 8 12721894 12756073 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LONRF2 2 100273291 100322733 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LONRF3 23 118974614 119018355 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 16 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LOR 1 153259700 153262122 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LOX 5 122063195 122078360 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 9 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LOXHD1 18 46476972 46657220 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 47 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LOXL1 15 73925989 73952137 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LOXL2 8 23297189 23425328 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 14 6 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LOXL3 2 74532414 74555690 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LOXL4 10 98247690 98268250 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 17 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPA 6 160531483 160664259 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 28 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPAR1 9 110873263 111038458 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPAR2 19 19623668 19628930 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPAR3 1 84811602 84893213 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPAR4 23 78747709 78757094 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPAR5 12 6618835 6636447 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPAR6 13 48389567 48444704 FALSE 946 1.34209374094336 90 48298831 48481842 0.593481580287395 10 NA 0.593481580287395 10 NA 183011 NA 2 7 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPCAT1 5 1456480 1523977 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPCAT2 16 55508998 55586670 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPCAT3 12 6976186 7018510 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPCAT4 15 34358618 34367278 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPGAT1 1 211743457 211830772 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPIN1 2 11677595 11827409 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPIN2 18 2916994 3013315 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPIN3 20 41340920 41360582 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 21 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPL 8 19901717 19967259 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPO 17 58218548 58268518 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPP 3 188153284 188890671 FALSE 314 -0.606665074241458 28 188406261 189597219 NA 2 NA NA 2 NA 1190958 NA 2 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LPXN 11 58526871 58578220 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRAT 4 154626945 154753118 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRBA 4 150264531 151015727 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 67 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRCH1 13 46553168 46753040 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRCH2 23 115110616 115234072 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 34 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRCH3 3 197791226 197888436 FALSE 321 -0.467968190041876 37 197514413 198169785 NA 2 NA NA 2 NA 655372 NA 7 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRCH4 7 100574011 100586153 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRCOL1 12 132603150 132610543 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRFN1 19 39306568 39315336 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRFN2 6 40391586 40587465 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRFN3 19 35935358 35945767 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRFN4 11 66856647 66860475 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRFN5 14 41607570 41904549 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRG1 19 4536409 4540474 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRGUK 7 134127299 134264591 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRIF1 1 110947185 110964079 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRIG1 3 66378797 66501263 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRIG2 1 113073209 113132260 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRIG3 12 58872149 58920522 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRIT1 10 84231593 84241461 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 10 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRIT2 10 84220495 84225589 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRIT3 4 109848202 109872315 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRMDA 10 75431453 76560167 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRMP 12 25004342 25108334 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 36 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP1 12 57128493 57213351 FALSE 887 2.08690517988165 117 57089277 57129157 0.593481580287395 18 NA 0.593481580287395 18 NA 39880 NA 3 102 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP10 14 22871613 22881580 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP11 6 149818798 149864026 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP12 8 104489231 104589024 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP1B 2 140231423 142131701 FALSE 176 -0.00454059069803786 56 140231482 142131004 0.593443012170704 3 NA 0.593443012170704 3 NA 1899522 NA 1 114 11 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP2 2 169127109 169362685 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 92 12 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP2BP 4 185363879 185395899 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP3 19 33177603 33208867 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 12 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP4 11 46856868 46918642 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 42 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP5 11 68312609 68449275 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 33 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP5L 22 25351418 25405377 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP6 12 12116025 12267012 FALSE 852 -0.515807943708335 34 12079259 12714091 NA 2 NA NA 2 NA 634832 NA 7 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRP8 1 53242364 53328070 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRPAP1 4 3503597 3532559 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRPPRC 2 43886508 43996005 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 38 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRR1 14 49598697 49614672 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC1 6 53794497 53924121 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC10 12 69608564 69611162 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC10B 11 61508800 61511018 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC14 8 144517992 144525178 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 18 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC14B 5 191511 195353 FALSE 366 -0.0813597508595068 54 92226 256841 0.569455701337318 3 NA 0.569455701337318 3 NA 164615 NA 4 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC15 3 194355247 194369743 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC17 7 102912991 102944949 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC18 10 48909483 48914232 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC19 9 26993136 27005693 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC2 3 46515423 46580099 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 14 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC20 10 70298970 70382650 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC23 12 6873569 6914243 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC24 8 144522377 144527032 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 7 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC25 19 18391144 18397617 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC26 9 137168758 137170051 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC27 10 132332154 132379918 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC28 15 99251362 99390729 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC29 16 67207139 67227048 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC3 21 44455486 44462196 FALSE 1411 -0.796790869313366 18 44231407 44533921 0.387809979850725 1 0 0.387809979850725 1 0 302514 1 8 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC30 18 7231125 7232047 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC31 3 169839179 169869930 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC32 11 76657524 76670747 FALSE 802 0.0329612857367844 58 76659812 76796320 0.387728048050399 4 NA 0.387728048050399 4 NA 136508 NA 2 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC34 3 169793428 169812986 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC36 16 67326798 67385203 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC37A 17 46292733 46337794 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC37A2 17 46511511 46555650 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC37A3 17 64854312 64919480 FALSE 1215 -0.310157730541577 44 64323838 64858765 0.18904974046126 3 NA 0.18904974046126 3 NA 534927 NA 7 21 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC37B 17 32007872 32053504 FALSE 1164 0.984408341061212 82 31932022 32022669 0.593481580287395 8 NA 0.593481580287395 8 NA 90647 NA 2 19 4 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC38 1 13474977 13514048 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC39 1 100148449 100178273 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC3B 3 26622806 26717537 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC3C 17 39941474 39944747 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC4 7 128027071 128032107 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC40 1 70144805 70205620 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC41 1 46261196 46303608 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 33 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC42 1 53946077 53968168 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC43 12 122167738 122203471 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC45 17 82023302 82031151 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 19 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC46 17 47831627 47837713 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC47 1 3778558 3796504 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC49 15 70853239 71053657 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 22 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC4B 19 50516892 50568045 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC4C 11 40114203 41459773 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC52 1 165544007 165563961 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC53 1 74469878 74512614 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC55 11 57181747 57191717 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC56 11 537527 554916 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC57 15 42537820 42548802 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC58 3 120324509 120349339 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC59 17 50375059 50397553 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC6 8 132571953 132675617 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 12 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC61 7 150322639 150338150 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC63 13 46211943 46277366 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC66 4 51993702 52017620 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC69 8 91101832 91219236 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC7 1 69568398 70151945 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 39 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC70 5 62578735 62581448 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC71 1 156920650 156933094 FALSE 65 -0.406384625980235 41 156886901 156948503 NA 2 NA NA 2 NA 61602 NA 3 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC72 7 16526880 16581568 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC73 6 43506969 43510686 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC74A 14 76826372 76870302 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC74B 22 21045960 21064168 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC75A 17 16441577 16492153 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC75B 22 24585620 24593208 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC8A 9 128882112 128918039 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC8B 1 89524836 89597864 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC8C 1 89633072 89769903 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC8D 1 89821014 89936611 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC8E 19 7888505 7902021 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRC9 14 59919713 60063559 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRCC1 8 85107147 85146076 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRD1 7 92141643 92179531 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRFIP1 2 237627576 237813682 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 33 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRFIP2 3 37052656 37183689 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 28 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRIQ1 12 85036314 85264457 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 34 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRIQ3 1 74026015 74198187 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRIQ4 3 169821922 169837775 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRK1 15 100919215 101078254 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 42 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRK2 12 40196744 40369285 FALSE 863 -0.717747500660561 19 38323881 40466037 0.593443012170704 1 0 0.593443012170704 1 0 2142156 1 8 64 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRN1 3 3799437 3847703 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRN2 1 204617170 204685733 FALSE 84 0.0730039668890317 60 204410206 204979607 0.593443012170704 3 NA 0.593443012170704 3 NA 569401 NA 5 8 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRN3 7 111091006 111125454 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRN4 20 6040778 6054049 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRN4CL 11 62686402 62689899 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRTM1 2 80288351 80304749 FALSE 152 0.711381197364187 77 79523244 80647833 0.593481580287395 6 NA 0.593481580287395 6 NA 1124589 NA 2 7 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRTM2 5 138868923 138875368 FALSE 397 0.440919835414963 70 138568982 138951267 0.569287299993522 5 NA 0.569287299993522 5 NA 382285 NA 4 8 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRTM3 10 66926006 67099830 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRRTM4 2 76747719 77593319 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRSAM1 9 127451486 127503501 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRTM1 3 54918237 54967088 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRTM2 12 1820267 1836752 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRTOMT 11 72080331 72110782 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 21 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LRWD1 7 102464929 102473168 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 16 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSAMP 3 115802363 117139389 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSG1 3 194640788 194672477 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM1 8 38163321 38176730 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM10 1 36391238 36397892 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM11 5 157743695 157760709 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM12 17 44034635 44067619 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM14A 19 34172504 34229515 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM14B 20 62122461 62135378 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM2 6 31797396 31806984 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM3 3 14178358 14201119 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM4 19 18306230 18323274 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM5 7 32485332 32495283 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM6 4 146175685 146200000 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM7 19 2321517 2328620 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSM8 7 118184032 118192824 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 4 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSMEM1 7 112480853 112491062 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSMEM2 3 50279027 50288114 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSP1 11 1852970 1892267 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSR 19 35248330 35267964 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LSS 21 46188141 46228824 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LST1 6 31586124 31588909 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTA 6 31572054 31574324 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 4 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTA4H 12 96000828 96043520 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTB 6 31580525 31582522 TRUE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTB4R 14 24311450 24318036 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTB4R2 14 24305734 24312053 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTBP1 2 32946972 33399509 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 40 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTBP2 14 74498170 74612378 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 41 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTBP3 11 65538805 65558930 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 29 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTBP4 19 40592883 40629818 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 40 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTBR 12 6375045 6391571 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTC4S 5 179793980 179796647 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTF 3 46435645 46485234 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTK 15 41503638 41513887 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTN1 21 28928144 28992956 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 36 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTO1 11 69653076 69675416 FALSE 795 1.97939544348603 113 69641322 70088057 0.593481580287395 17 NA 0.593481580287395 17 NA 446735 NA 6 11 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LTV1 6 143843344 143863812 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUC7L 16 188969 229463 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUC7L2 7 139340359 139423457 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUC7L3 17 50719544 50756213 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUM 12 91102629 91111831 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LURAP1 1 46203334 46221261 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LURAP1L 9 12775021 12822131 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUZP1 1 23084023 23177808 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUZP2 11 24496970 25082631 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUZP4 23 115289727 115307556 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LUZP6 7 135927274 135927450 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LVRN 5 115962454 116027619 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LXN 3 158645822 158672693 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 18 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6D 8 142784880 142786592 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6E 8 143017982 143023832 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6G5B 6 31670167 31673776 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6G5C 6 31676684 31684040 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6G6C 6 31718648 31721845 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6G6D 6 31715356 31717804 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6G6E 6 31711771 31714065 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6G6F 6 31706885 31710595 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6G6F-LY6G6D 6 31706904 31717918 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6H 8 143157914 143160711 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY6K 8 142700111 142705127 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY75 2 159803355 159904749 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 38 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY75-CD302 2 159771851 159904710 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 44 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY86 6 6588108 6654983 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY9 1 160796074 160828261 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LY96 8 73991352 74029087 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYAR 4 4267701 4290169 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYG1 2 99284238 99304742 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYG2 2 99242246 99255282 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYL1 19 13099033 13103161 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYN 8 55879813 56014168 FALSE 617 0.00128330518501094 58 54463154 55950592 0.387728048050399 4 NA 0.387728048050399 4 NA 1487438 NA 5 27 7 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYNX1 8 142771197 142777810 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYNX1-SLURP2 8 142764334 142778224 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD1 2 132644853 132671579 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD2 8 142750150 142752534 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD3 19 43460787 43465660 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD4 19 41837074 41844697 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 5 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD5 19 43795929 43827206 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 7 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD6 2 149329985 149474148 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD6B 2 149038107 149215262 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPD8 1 248718649 248755739 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPLA1 8 54046367 54102017 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPLA2 1 23790970 23795539 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYPLAL1 1 219173844 219212865 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYRM1 16 20899868 20925006 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYRM2 6 89568144 89638753 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYRM4 6 5102593 5260939 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYRM7 5 131170810 131205426 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYRM9 17 27878314 27894752 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYSMD1 1 151159748 151165948 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYSMD2 15 51723011 51751585 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYSMD3 5 90515611 90529584 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYSMD4 15 99715697 99733561 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYST 1 235661041 235883640 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 69 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYVE1 11 10556966 10611689 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 18 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYZ 12 69348341 69354234 FALSE 897 -0.511427456070603 34 68856545 69390172 NA 2 NA NA 2 NA 533627 NA 4 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYZL1 10 29289061 29318328 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 5 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYZL2 10 30611779 30629762 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYZL4 3 42397078 42410600 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LYZL6 17 35934518 35943699 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LZIC 1 9922113 9943407 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LZTFL1 3 45823316 45916042 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LZTR1 22 20982013 20999038 TRUE 1416 -0.313984805006198 44 20967902 20991844 0.18904974046126 3 NA 0.18904974046126 3 NA 23942 NA 2 34 4 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LZTS1 8 20246165 20303963 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LZTS2 10 100996618 101007836 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 LZTS3 20 3162617 3173592 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 9 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 M1AP 2 74557883 74648338 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 M6PR 12 8940363 8949955 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAATS1 3 119703022 119767102 FALSE 277 -0.549951694983867 31 119616037 119817077 NA 2 NA NA 2 NA 201040 NA 6 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAB21L1 13 35474182 35477209 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAB21L2 4 150581922 150584693 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAB21L3 1 116111755 116135240 FALSE 41 -0.81063338900568 15 115664208 116388119 0.449390955025597 1 0 0.449390955025597 1 0 723911 1 6 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAB21L4 2 240886048 240896889 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MACC1 7 20134655 20217404 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MACF1 1 39081316 39487177 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 127 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MACO1 1 25430858 25500209 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MACROD1 11 63998558 64166106 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 17 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MACROD2 20 13995369 16053197 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAD1L1 7 1815793 2233243 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAD2L1 4 120055608 120067074 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAD2L1BP 6 43629540 43640952 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAD2L2 1 11674480 11691650 TRUE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 19 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MADCAM1 19 489176 505342 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MADD 11 47269161 47330031 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 40 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAEA 4 1289851 1340147 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAEL 1 166975582 167022214 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAF 16 79585843 79600714 TRUE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAF1 8 144104499 144107611 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAFA 8 143419182 143430406 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAFB 20 40685848 40689240 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAFF 22 38200767 38216511 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAFG 17 81918270 81927714 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAFK 7 1530714 1543043 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAG 19 35292125 35313804 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA1 23 153179285 153183880 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA10 23 152133310 152138578 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA11 23 149688228 149717266 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA12 23 152733779 152737669 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA3 23 152698752 152702347 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA4 23 151912509 151925170 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 4 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA6 23 152766136 152769747 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEA8 23 149881141 149885835 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB1 23 30243730 30252038 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB10 23 27807990 27823014 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB16 23 35798342 35803735 FALSE 1463 -0.0126664078313421 56 34129908 36073394 0.593443012170704 3 NA 0.593443012170704 3 NA 1943486 NA 5 4 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB17 23 16167481 16171464 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB18 23 26138343 26140735 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 5 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB2 23 30215560 30220089 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 4 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB3 23 30230436 30237492 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB4 23 30242052 30244193 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB5 23 26216169 26218270 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB6 23 26192440 26195646 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEB6B 23 26160601 26161824 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEC1 23 141903894 141909388 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 15 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEC2 23 142202345 142205290 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEC3 23 141838316 141897832 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGED1 23 51803007 51902357 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGED2 23 54807599 54816012 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 15 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEE1 23 76427724 76431353 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEE2 23 75782988 75785236 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEF1 3 184710367 184712002 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEH1 23 55452105 55453566 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGEL2 15 23643549 23647867 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGI1 3 65353525 66038834 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 32 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGI2 7 78017057 79453574 FALSE 536 1.55308049317746 98 78017316 79453701 0.593481580287395 12 NA 0.593481580287395 12 NA 1436385 NA 1 44 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGI3 1 113390749 113685923 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGIX 23 49162564 49168483 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGOH 1 53226892 53238610 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGOHB 12 10604190 10613623 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAGT1 23 77826364 77895593 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAIP1 2 199955317 200008540 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAJIN 11 64937517 64972085 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAK 6 10762723 10838555 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAK16 8 33484750 33501260 FALSE 600 -1.17029510777563 6 33372626 36935533 0.593443012170704 1 0 0.593443012170704 1 0 3562907 1 7 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAL 2 95025677 95053996 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAL2 8 119165034 119245673 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MALL 2 110083870 110116566 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MALRD1 10 19048771 19790401 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 46 11 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MALSU1 7 23298739 23311729 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MALT1 18 58671386 58754477 FALSE 1260 1.79126719700034 107 58671560 58920624 0.593481580287395 15 NA 0.593481580287395 15 NA 249064 NA 2 39 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAMDC2 9 70043581 70226970 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 18 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAMDC4 9 136850943 136860799 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAML1 5 179732850 179777286 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAML2 11 95976598 96343180 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAML3 4 139716753 140154184 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAMLD1 23 150361422 150514178 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 17 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAMSTR 19 48712742 48719721 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN1A1 6 119177209 119349761 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 14 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN1A2 1 117367449 117528872 FALSE 44 -0.612782580472254 28 117170176 117606049 NA 2 NA NA 2 NA 435873 NA 3 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN1B1 9 137086927 137109187 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN1C1 1 25617468 25786207 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN2A1 5 109689366 109869625 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 24 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN2A2 15 90902218 90922584 FALSE 1056 0.0480309521361265 60 90717402 90913593 0.593443012170704 3 NA 0.593443012170704 3 NA 196191 NA 4 24 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN2B1 19 12646511 12666742 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN2B2 4 6575175 6623362 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAN2C1 15 75355207 75368630 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 26 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MANBA 4 102630770 102760994 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MANBAL 20 37289638 37317260 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 2 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MANEA 6 95577543 95609457 FALSE 477 1.45369245643712 95 93240737 95586540 0.593481580287395 11 NA 0.593481580287395 11 NA 2345803 NA 2 8 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MANEAL 1 37793802 37801137 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MANF 3 51385047 51389397 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MANSC1 12 12326056 12350541 FALSE 852 -0.515807943708335 34 12079259 12714091 NA 2 NA NA 2 NA 634832 NA 7 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MANSC4 12 27762738 27771276 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAOA 23 43654907 43746824 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAOB 23 43766611 43882447 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP10 1 232804892 232808407 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP1A 15 43510958 43531620 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 33 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP1B 5 72107234 72209570 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP1LC3A 20 34546854 34560345 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP1LC3B 16 87383995 87404779 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP1LC3B2 12 116548105 116576448 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP1LC3C 1 241995490 241999073 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP1S 19 17719242 17734516 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2 2 209424058 209734118 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2K1 15 66386817 66492312 FALSE 1031 1.71408981478719 103 66386896 66491583 0.593481580287395 14 NA 0.593481580287395 14 NA 104687 NA 2 25 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2K2 19 4090321 4124129 FALSE 1279 1.30792485391138 90 4043571 4124130 0.593481580287395 10 NA 0.593481580287395 10 NA 80559 NA 2 21 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2K3 17 21284672 21315240 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 12 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2K4 17 12020824 12143830 TRUE 1150 0.308334653360781 67 11992761 12148936 0.593443012170704 4 NA 0.593443012170704 4 NA 156175 NA 2 32 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2K5 15 67542709 67807123 FALSE 1034 -0.650081137244343 25 67202833 68183661 0.276933305076759 1 0 0.276933305076759 1 0 980828 1 6 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2K6 17 69414698 69553861 FALSE 1223 -0.496089611473999 34 69152090 70130906 NA 2 NA NA 2 NA 978816 NA 4 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP2K7 19 7903843 7914478 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K1 5 56815574 56896152 TRUE 377 0.955949899562347 82 56815772 56901268 0.593481580287395 8 NA 0.593481580287395 8 NA 85496 NA 1 44 10 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K10 19 40191744 40215575 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K11 11 65597755 65615382 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K12 12 53479669 53500063 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K13 3 185282941 185489097 FALSE 306 -0.731204027242427 21 184824760 185282991 0.328777186374237 1 0 0.328777186374237 1 0 458231 1 4 53 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K14 17 45263119 45317145 FALSE 1194 1.92905879442296 111 45263232 45396552 0.593481580287395 16 NA 0.593481580287395 16 NA 133320 NA 2 28 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K15 23 19360056 19515261 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K19 2 134964491 135047468 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K2 2 127298730 127388465 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K20 2 173075435 173268010 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K21 1 233327768 233385148 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K3 17 63622415 63696303 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K4 6 160991727 161117385 FALSE 511 0.232361052265423 64 160752984 163562056 0.593443012170704 4 NA 0.593443012170704 4 NA 2809072 NA 6 37 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K5 6 136557047 136792518 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 31 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K6 1 27355184 27366892 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 28 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K7 6 90513573 90587045 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K7CL 21 29077471 29175889 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K8 10 30433937 30461833 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP3K9 14 70722526 70809534 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 22 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP4 3 47850690 48089272 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP4K1 19 38587641 38618882 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP4K2 11 64784914 64803241 FALSE 788 -0.567376751383287 31 64559137 64803166 NA 2 NA NA 2 NA 244029 NA 7 27 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP4K3 2 39249266 39437312 FALSE 129 -0.788642704622343 18 39178582 42057703 0.387809979850725 1 0 0.387809979850725 1 0 2879121 1 7 35 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP4K4 2 101696850 101894689 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 33 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP4K5 14 50418501 50561126 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP6 11 75586918 75669120 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP6D1 3 183815876 183825594 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP7 6 136342281 136550819 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP7D1 1 36155579 36180849 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP7D2 23 20006713 20116917 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 18 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP7D3 23 136213220 136256482 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAP9 4 155342658 155376970 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK1 22 21754500 21867680 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 26 6 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK10 4 85990007 86594625 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 20 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK11 22 50263713 50270767 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 10 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK12 22 50245450 50261825 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 30 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK13 6 36127809 36144524 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK14 6 36027677 36111236 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK15 8 143716259 143722458 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 14 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK1IP1L 14 55051631 55070192 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK3 16 30114105 30123506 FALSE 1098 0.770455142983048 78 30114079 30194719 0.593481580287395 7 NA 0.593481580287395 7 NA 80640 NA 4 14 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK4 18 50560078 50731824 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK6 15 51952106 52067372 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 22 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK7 17 19377721 19383544 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK8 10 48306639 48439360 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK8IP1 11 45885651 45906465 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 16 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK8IP2 22 50600685 50613981 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK8IP3 16 1706183 1770317 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 34 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPK9 5 180233143 180292099 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPKAP1 9 125437393 125707234 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPKAPK2 1 206684944 206734283 FALSE 90 0.190362503288792 63 206637710 206774383 0.54220702508464 4 NA 0.54220702508464 4 NA 136673 NA 3 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPKAPK3 3 50611520 50649297 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPKAPK5 12 111841978 111902238 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPKBP1 15 41774434 41827855 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 37 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPRE1 20 32819893 32850405 FALSE 1373 0.921004845427493 81 32358286 32833703 0.593481580287395 7 NA 0.593481580287395 7 NA 475417 NA 7 6 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPRE2 18 34976928 35143470 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPRE3 2 26970612 27027196 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAPT 17 45894382 46028334 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARC1 1 220786759 220819657 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARC2 1 220748225 220784815 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH1 4 163524298 164384050 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH10 17 62701314 62808344 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH11 5 16067139 16180762 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH2 19 8413270 8439017 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH3 5 126867714 127030808 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH4 2 216257865 216372027 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH5 10 92291163 92353964 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH6 5 10353703 10440388 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH7 2 159712457 159771027 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH8 10 45454585 45594906 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCH9 12 57755098 57760407 FALSE 893 0.77963013665916 78 57748272 57766231 0.593481580287395 7 NA 0.593481580287395 7 NA 17959 NA 4 8 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCKS 6 113857362 113863471 FALSE 482 -0.684947044489322 25 112071952 113860176 0.276933305076759 1 0 0.276933305076759 1 0 1788224 1 6 5 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCKSL1 1 32333832 32336379 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCO 2 118942166 118994660 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARCOL 5 148221650 148243580 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARF1 16 15594386 15643166 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARK1 1 220528183 220664461 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARK2 11 63838928 63911019 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARK3 14 103385392 103503831 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 19 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARK4 19 45079288 45305283 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 67 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARS 12 57475445 57517569 FALSE 889 1.19452668102255 87 57459909 57476074 0.593481580287395 9 NA 0.593481580287395 9 NA 16165 NA 3 39 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARS2 2 197705369 197708387 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARVELD1 10 97713173 97718152 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARVELD2 5 69415065 69444330 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MARVELD3 16 71626161 71642114 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAS1 6 159906690 159916530 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAS1L 6 29486697 29487956 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MASP1 3 187217285 187292022 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MASP2 1 11026523 11047233 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAST1 19 12833951 12874951 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 35 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAST2 1 45786987 46036124 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 39 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAST3 19 18097793 18151692 FALSE 1318 -0.547059940466149 31 17859952 18149709 NA 2 NA NA 2 NA 289757 NA 7 32 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAST4 5 66596361 67169595 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 52 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MASTL 10 27154824 27186924 FALSE 712 -1.04174627008432 9 27112127 27161086 0.593443012170704 1 0 0.593443012170704 1 0 48959 1 2 18 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAT1A 10 80271820 80289684 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAT2A 2 85539165 85545280 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAT2B 5 163503114 163519336 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MATK 19 3777970 3802129 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MATN1 1 30711277 30723587 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MATN2 8 97868840 98036716 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 21 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MATN3 2 19992111 20012694 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MATN4 20 45293445 45308529 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MATR3 5 139273752 139331677 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAU2 19 19320681 19358755 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAVS 20 3846799 3876123 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAX 14 65006174 65102695 TRUE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 37 6 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MAZ 16 29806106 29811164 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MB 22 35606764 35637951 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MB21D2 3 192796815 192918161 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD1 18 50266882 50281774 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD2 18 54151601 54224788 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD3 19 1573596 1592801 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD3L1 19 8832398 8843340 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD3L2 19 7049321 7051735 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD3L2B 19 7018969 7021450 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD3L3 19 7056209 7058640 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD3L5 19 7030578 7033011 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD4 3 129430944 129440179 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD5 2 148021011 148516971 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBD6 12 57520710 57530148 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBIP 14 36298558 36320676 FALSE 972 -0.135983194539659 52 35406876 36513087 0.426118104232275 3 NA 0.426118104232275 3 NA 1106211 NA 5 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBL2 10 52765380 52771700 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBLAC1 7 100126694 100128498 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBLAC2 5 90458203 90474768 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBNL1 3 152243828 152465780 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBNL2 13 97221434 97394120 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBNL3 23 132369317 132489968 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBOAT1 6 20102145 20212399 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBOAT2 2 8852690 9003813 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBOAT4 8 30131824 30144686 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBOAT7 19 54173412 54189882 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBP 18 76978827 77133683 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBTD1 17 51177425 51260163 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBTPS1 16 84053761 84116906 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MBTPS2 23 21839636 21885424 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 18 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MC1R 16 89912119 89920977 FALSE 1131 1.56043341681678 98 89911245 89936047 0.593481580287395 12 NA 0.593481580287395 12 NA 24802 NA 4 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MC2R 18 13882044 13915707 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MC3R 20 56248732 56249815 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MC4R 18 60371062 60372775 FALSE 1262 0.817722595194636 79 59898096 60372169 0.593481580287395 7 NA 0.593481580287395 7 NA 474073 NA 2 4 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MC5R 18 13824149 13827323 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCAM 11 119308529 119321521 FALSE 818 1.86901932406862 109 119206405 119312590 0.593481580287395 16 NA 0.593481580287395 16 NA 106185 NA 2 16 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCAT 22 43132206 43143394 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCC 5 113022099 113488830 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCCC1 3 183015218 183116075 FALSE 302 -0.798113066557288 18 183015527 183427874 0.387809979850725 1 0 0.387809979850725 1 0 412347 1 4 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCCC2 5 71587288 71658704 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCCD1 6 31528717 31530232 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 2 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCEE 2 71109684 71130239 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCEMP1 19 7676628 7679826 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCF2 23 139581770 139708227 FALSE 1520 -0.880146503545695 13 138739250 139832175 0.522719719214577 1 0 0.522719719214577 1 0 1092925 1 4 30 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCF2L 13 112894378 113099739 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 36 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCF2L2 3 183178043 183428778 FALSE 302 -0.798113066557288 18 183015527 183427874 0.387809979850725 1 0 0.387809979850725 1 0 412347 1 4 35 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCFD2 2 46901870 46941855 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCHR1 22 40678750 40682814 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCHR2 6 99919910 99994247 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCIDAS 5 55219614 55227315 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCL1 1 150574551 150579738 FALSE 54 2.28166798505439 120 150574389 150579566 0.593481580287395 21 NA 0.593481580287395 21 NA 5177 NA 1 17 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM10 10 13161554 13211104 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM2 3 127598223 127622436 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM3 6 52264009 52284881 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM3AP 21 46235126 46286297 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 38 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM4 8 47960185 47978160 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM5 22 35400063 35425430 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM6 2 135839626 135876426 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM7 7 100092728 100101940 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 17 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM8 20 5950652 5998977 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCM9 6 118813442 118935162 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCMBP 10 119829404 119892556 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCMDC2 8 66870749 66922048 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCOLN1 19 7522626 7534009 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCOLN2 1 84925583 84997113 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCOLN3 1 85018082 85048499 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCPH1 8 6406592 6648504 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 30 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCRIP1 17 81822361 81833302 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCRIP2 16 636817 648474 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCRS1 12 49556544 49568153 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCTP1 5 94703741 95284575 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCTP2 15 94231538 94483952 FALSE 1059 -0.999534667247782 11 93072984 98485893 0.593443012170704 1 0 0.593443012170704 1 0 5412909 1 6 25 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCTS1 23 120594010 120621074 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCU 10 72692131 72887694 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCUB 4 109560205 109688726 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MCUR1 6 13786557 13814568 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 10 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDC1 6 30699807 30717889 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 31 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDFI 6 41636882 41654246 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDFIC 7 114922154 115019202 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDGA1 6 37630679 37699306 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDGA2 14 46840092 47674954 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDH1 2 63588609 63607197 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDH1B 2 206737763 206765547 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDH2 7 76048051 76067508 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDK 11 46380756 46383837 FALSE 775 -0.488983327470503 37 45935757 46543340 NA 2 NA NA 2 NA 607583 NA 6 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDM1 12 68272443 68332381 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 21 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDM2 12 68808176 68850686 FALSE 896 2.27010095138897 120 68808384 68845507 0.593481580287395 21 NA 0.593481580287395 21 NA 37123 NA 2 32 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDM4 1 204516379 204558120 FALSE 84 0.0730039668890317 60 204410206 204979607 0.593443012170704 3 NA 0.593443012170704 3 NA 569401 NA 5 35 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDN1 6 89642499 89819723 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 110 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MDP1 14 24213937 24216070 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ME1 6 83210389 83431071 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ME2 18 50878734 50954257 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ME3 11 86441108 86672636 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEA1 6 43011143 43016868 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEAF6 1 37492575 37514774 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MECOM 3 169083499 169663618 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MECP2 23 154021573 154137103 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MECR 1 29192873 29230942 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 11 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED1 17 39404285 39451286 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED10 5 6371881 6378594 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED11 17 4731428 4733610 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED12 23 71118556 71142454 TRUE 1492 1.41079831549961 93 71118808 71254970 0.593481580287395 11 NA 0.593481580287395 11 NA 136162 NA 4 49 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED12L 3 151085697 151437072 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 70 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED13 17 61942605 62065282 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 39 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED13L 12 115953872 116277719 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 39 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED14 23 40648306 40735858 FALSE 1468 -0.326446288418871 44 40143046 41232371 0.18904974046126 3 NA 0.18904974046126 3 NA 1089325 NA 6 34 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED15 22 20495913 20587632 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED16 19 867630 893218 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 19 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED17 11 93784227 93814963 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED18 1 28329002 28335967 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED19 11 57703714 57712323 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED20 6 41905354 41921139 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED21 12 27022546 27066343 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED22 9 133338323 133348131 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED23 6 131573966 131628229 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 43 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED24 17 40019097 40061215 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 27 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED25 19 49818279 49840383 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED26 19 16574907 16629062 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED27 9 131860107 132079908 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED28 4 17614631 17634105 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED29 19 39391303 39400637 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED30 8 117520713 117540262 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED31 17 6643315 6651634 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED4 13 48053323 48095131 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED6 14 70581257 70600690 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED7 5 157137412 157159019 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED8 1 43383917 43389808 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MED9 17 17476986 17493226 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEDAG 13 30906191 30925572 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEF2A 15 99565417 99716466 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEF2B 19 19145568 19170289 FALSE 1322 2.02633800492863 113 19145724 19180744 0.593481580287395 18 NA 0.593481580287395 18 NA 35020 NA 3 12 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEF2C 5 88717117 88904257 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEF2D 1 156463727 156500828 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEFV 16 3242028 3256627 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEGF10 5 127290831 127465737 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 28 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEGF11 15 65895079 66253747 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 25 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEGF6 1 3489920 3611495 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 37 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEGF8 19 42325609 42378769 FALSE 1342 -0.424583186963262 37 42297126 42410557 NA 2 NA NA 2 NA 113431 NA 6 60 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEGF9 9 120600813 120714470 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEI1 22 41699499 41799456 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEI4 6 77650274 77927028 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEIG1 10 14959439 14988050 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEIKIN 5 131806993 131945698 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEIOB 16 1833987 1884294 FALSE 1067 -1.44672659369112 3 1809849 1868124 0.495458993698265 0 0 0.495458993698265 0 0 58275 0 3 13 6 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEIOC 17 44656404 44690308 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 19 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEIS1 2 66433452 66573869 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 13 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEIS2 15 36889204 37101299 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEIS3 19 47403124 47419523 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MELK 9 36572862 36677683 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MELTF 3 196988621 197029816 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 17 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEMO1 2 31865060 32011230 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEN1 11 64803510 64811294 TRUE 789 1.88852834083638 109 64803682 64811101 0.593481580287395 16 NA 0.593481580287395 16 NA 7419 NA 1 21 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEOX1 17 43640388 43661954 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEOX2 7 15611212 15686812 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEP1A 6 46793390 46839782 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEP1B 18 32185069 32220404 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEPCE 7 100428790 100434126 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEPE 4 87821411 87846817 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MERTK 2 111898479 112029561 FALSE 167 0.92458000840396 81 111898815 112029594 0.593481580287395 7 NA 0.593481580287395 7 NA 130779 NA 1 24 5 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MESD 15 80946289 80989878 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MESP1 15 89748661 89751310 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MESP2 15 89760591 89778754 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEST 7 130486171 130506465 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MET 7 116672390 116798386 FALSE 556 2.96536444167507 132 116500298 116803457 0.593481580287395 35 NA 0.593481580287395 35 NA 303159 NA 3 75 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METAP1 4 98995620 99062813 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METAP1D 2 171999583 172082430 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METAP2 12 95473520 95515839 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METRN 16 715115 719655 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METRNL 17 83079691 83095119 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL1 12 57768471 57772793 FALSE 894 -0.430411211949774 37 57767016 57809571 NA 2 NA NA 2 NA 42555 NA 6 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL11B 1 170146001 170167790 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL13 1 171781664 171814023 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL14 4 118685368 118715433 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL15 11 28108248 28527041 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL16 17 2405562 2511891 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL17 14 20989770 20997035 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL18 1 169792529 169794966 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL21A 2 207580631 207625928 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL21C 13 102685744 102694504 FALSE 953 -1.16930356970358 6 102597025 102694471 0.593443012170704 1 0 0.593443012170704 1 0 97446 1 2 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL22 16 8621683 8649654 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 11 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL23 17 76726830 76733936 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 4 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL24 6 110245928 110358272 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL25 12 82358497 82479236 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL26 16 634427 636366 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL27 7 73834590 73842535 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL2A 17 62423867 62450822 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL2B 7 128476729 128506602 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL3 14 21498133 21511375 FALSE 967 -1.20153546954423 5 21463770 21511134 0.40635440857188 0 0 0.40635440857188 0 0 47364 0 3 12 2 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL4 18 2537525 2571509 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL5 2 169810081 169824931 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL6 3 15381275 15440566 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL7A 12 50923472 50932517 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL7B 12 55681546 55684611 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL8 2 171317405 171434802 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 METTL9 16 21597218 21657473 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEX3A 1 156072013 156081998 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEX3B 15 82041778 82046141 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEX3C 18 51174550 51218304 FALSE 1258 0.452268897061588 70 50986670 52752180 0.569287299993522 5 NA 0.569287299993522 5 NA 1765510 NA 5 8 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MEX3D 19 1554669 1568058 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFAP1 15 43804492 43824802 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFAP2 1 16974502 16980835 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFAP3 5 154038906 154220478 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFAP3L 4 169986597 170033031 FALSE 360 -0.641187509684452 28 169424742 172229692 NA 2 NA NA 2 NA 2804950 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFAP4 17 19383442 19387240 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFAP5 12 8637346 8662888 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFF 2 227325151 227357836 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFGE8 15 88898683 88913411 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFHAS1 8 8783354 8893645 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 14 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFN1 3 179347692 179394931 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFN2 1 11980181 12013514 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFNG 22 37469063 37486401 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFRP 11 119338942 119346673 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 18 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD1 3 158732198 158829719 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD10 4 2930561 2934859 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD11 17 76735865 76781449 FALSE 1234 2.16554578909691 118 76733266 76737321 0.593481580287395 19 NA 0.593481580287395 19 NA 4055 NA 4 19 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD12 19 3538261 3574290 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD13A 10 102461395 102477045 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD14A 1 100038097 100083377 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD14B 9 94374551 94461042 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD14C 9 96887373 97013708 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD2A 1 39955112 39969968 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD2B 2 24010081 24063321 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD3 8 144509074 144511213 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 7 0 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD4A 1 205568885 205602918 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 12 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD4B 6 111259348 111271167 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD5 12 53251251 53254405 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD6 2 190408355 190509205 FALSE 197 -0.634190880282039 28 190057538 191008950 NA 2 NA NA 2 NA 951412 NA 9 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD6L 17 8797162 8799349 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD8 4 127917732 127966034 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MFSD9 2 102715840 102736888 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGA 15 41621224 41773081 TRUE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 80 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAM 7 141907813 142106747 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 61 7 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAM2 7 142111749 142222324 FALSE 569 -0.436854664085822 37 141973117 142749531 NA 2 NA NA 2 NA 776414 NA 6 55 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGARP 4 139266163 139280338 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT1 5 180784782 180815652 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT2 14 49620795 49623481 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT3 22 39457344 39492194 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT4A 2 98619106 98731126 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT4B 5 179797597 179806952 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT4C 12 85955666 86838904 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT4D 4 140442262 140498377 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT5 2 134119983 134454621 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGAT5B 17 76868456 76950393 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 20 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGLL 3 127689062 128052190 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGME1 20 17968913 17991122 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGMT 10 129467184 129768007 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGP 12 14881181 14885926 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGRN1 16 4616493 4690974 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 18 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGST1 12 16347142 16609259 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGST2 4 139665768 139740745 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MGST3 1 165630861 165661796 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIA 19 40771648 40777490 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIA-RAB4B 19 40771648 40796943 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIA2 14 39230231 39388513 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 39 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIA3 1 222618086 222668012 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 40 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIB1 18 21704957 21870957 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIB2 1 1615415 1630610 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICA 6 31399784 31415315 FALSE 445 1.18201667424423 86 31170330 31412421 0.593481580287395 9 2 0.593481580287395 9 2 242091 7 4 7 4 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICAL1 6 109444062 109465968 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 30 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICAL2 11 12094008 12359144 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 41 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICAL3 22 17787649 18024559 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 45 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICALL1 22 37905657 37942822 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICALL2 7 1428465 1459502 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICB 6 31494881 31511124 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICU1 10 72367327 72626191 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICU2 13 21492691 21604214 FALSE 934 -0.998766566201071 11 21140591 21604174 0.593443012170704 1 0 0.593443012170704 1 0 463583 1 5 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MICU3 8 17027238 17122644 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MID1 23 10445310 10833654 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MID1IP1 23 38801432 38806537 FALSE 1467 1.60015810765193 100 38805033 40113593 0.593481580287395 13 NA 0.593481580287395 13 NA 1308560 NA 2 3 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MID2 23 107825755 107927193 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIDN 19 1248553 1259140 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIEF1 22 39499432 39518132 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIEF2 17 18260534 18266552 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIEN1 17 39728496 39730787 FALSE 1174 1.20146531462634 87 39700072 39728696 0.593481580287395 9 NA 0.593481580287395 9 NA 28624 NA 2 4 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIER1 1 66924895 66988619 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIER2 19 301444 344815 FALSE 1268 -0.550469679268302 31 110858 440853 NA 2 NA NA 2 NA 329995 NA 6 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIER3 5 56919602 56971675 FALSE 378 -0.616076199226728 28 56909685 57262664 NA 2 NA NA 2 NA 352979 NA 3 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIF 22 23894004 23895227 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIF4GD 17 75266228 75271227 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIGA1 1 77779624 77879539 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIGA2 9 129036621 129072082 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIIP 1 12019466 12032045 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MILR1 17 64449037 64468643 FALSE 1215 -0.310157730541577 44 64323838 64858765 0.18904974046126 3 NA 0.18904974046126 3 NA 534927 NA 7 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINDY1 1 150996086 151008375 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINDY2 15 58771192 58861900 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINDY3 10 15778170 15860520 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINDY4 7 30771417 30892387 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 21 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINDY4B 3 150871045 150905439 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINK1 17 4833388 4898061 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 34 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINOS1 1 19484403 19629821 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINOS1-NBL1 1 19597067 19656927 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MINPP1 10 87504875 87553460 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIOS 7 7566872 7608929 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIOX 22 50486784 50490648 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIP 12 56449502 56469166 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIPEP 13 23730189 23889419 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIPOL1 14 37197913 37552361 FALSE 974 -0.450947578923555 37 36678479 37546904 NA 2 NA NA 2 NA 868425 NA 3 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIS12 17 5486285 5490814 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIS18A 21 32268219 32279069 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIS18BP1 14 45203190 45253540 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MISP 19 751126 764318 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MISP3 19 14072536 14075062 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MITD1 2 99161427 99181058 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MITF 3 69739435 69968337 TRUE 266 1.13300035445803 84 69734550 71589030 0.593481580287395 9 NA 0.593481580287395 9 NA 1854480 NA 4 40 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MIXL1 1 226223618 226227054 FALSE 93 -1.06063729750457 9 226152590 226309117 0.593443012170704 1 0 0.593443012170704 1 0 156527 1 3 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKI67 10 128096659 128126385 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 47 11 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKKS 20 10401009 10434222 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKLN1 7 131110096 131496636 FALSE 563 0.960026723006032 82 131110123 131487994 0.593481580287395 8 NA 0.593481580287395 8 NA 377871 NA 1 51 7 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKNK1 1 46557408 46616843 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKNK2 19 2037465 2051244 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKRN1 7 140453040 140479569 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKRN2 3 12557014 12583713 FALSE 238 -1.22046191921172 5 12489827 12576760 0.40635440857188 0 0 0.40635440857188 0 0 86933 0 3 14 2 TRUE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKRN2OS 3 12514934 12561059 FALSE 238 -1.22046191921172 5 12489827 12576760 0.40635440857188 0 0 0.40635440857188 0 0 86933 0 3 12 1 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKRN3 15 23565674 23630075 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKS1 17 58205437 58219605 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MKX 10 27672875 27746060 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLANA 9 5890802 5910606 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLC1 22 50059391 50085902 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLEC 12 120686869 120701864 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLF1 3 158571163 158607252 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLF2 12 6747996 6767475 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLH1 3 36993332 37050918 TRUE 245 0.00965039669169977 58 36991404 37050771 0.387728048050399 4 NA 0.387728048050399 4 NA 59367 NA 2 42 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLH3 14 75013764 75051532 FALSE 986 2.40469880070653 122 75013903 75051426 0.593481580287395 23 NA 0.593481580287395 23 NA 37523 NA 1 39 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLIP 6 53929982 54266280 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLKL 16 74671855 74700960 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLLT1 19 6210379 6279948 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLLT10 10 21524675 21743630 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLLT11 1 151057758 151068497 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLLT3 9 20341665 20622543 FALSE 654 1.91554066967437 111 19622270 20346495 0.593481580287395 16 NA 0.593481580287395 16 NA 724225 NA 2 34 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLLT6 17 38705542 38729803 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLN 6 33794673 33804011 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLNR 13 49220338 49222377 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLPH 2 237485428 237555318 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLST8 16 2204248 2209416 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLX 17 42567068 42573239 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLXIP 12 122078722 122147347 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLXIPL 7 73593194 73624543 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MLYCD 16 83899126 83927026 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMAA 4 145599042 145660035 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMAB 12 109553737 109573874 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMACHC 1 45500053 45513382 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMADHC 2 149569634 149587816 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMD 17 55392613 55421992 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMD2 7 4905989 4959213 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MME 3 155024124 155183729 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMEL1 1 2590639 2632990 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMGT1 23 135962070 135974063 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP1 11 102789920 102798160 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP10 11 102770503 102780628 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP11 22 23768226 23784316 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 12 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP12 11 102862736 102875034 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP13 11 102942995 102955734 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP14 14 22836557 22849027 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP15 16 58025566 58046901 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP16 8 88032009 88328025 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP17 12 131828393 131851783 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP19 12 55835433 55842966 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP2 16 55389700 55506691 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP20 11 102576835 102625332 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP21 10 125766453 125775821 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP23B 1 1632095 1635263 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP24 20 35226654 35277000 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP24OS 20 35201745 35278131 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP25 16 3046681 3060726 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP26 11 4704927 4992429 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 53 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP27 11 102691487 102705806 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 11 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP28 17 35756249 35795707 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP3 11 102835801 102843803 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP7 11 102520508 102530753 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 7 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP8 11 102711795 102727050 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMP9 20 46008908 46016561 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMRN1 4 89879532 89954629 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMRN2 10 86935540 86969481 FALSE 730 -0.0135199939038329 56 86927969 86944325 0.593443012170704 3 NA 0.593443012170704 3 NA 16356 NA 2 23 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMS19 10 97458324 97498794 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 32 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MMS22L 6 97142161 97283217 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 26 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MN1 22 27748277 27801498 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MNAT1 14 60734742 60969953 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MND1 4 153344649 153415118 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MNDA 1 158831317 158849506 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MNS1 15 56421544 56465137 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MNT 17 2384060 2401118 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MNX1 7 156994051 157010651 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOAP1 14 93182196 93184928 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOB1A 2 74152528 74178898 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOB1B 4 70902326 71022449 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOB2 11 1469457 1501247 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOB3A 19 2071038 2096673 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 4 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOB3B 9 27325209 27529781 TRUE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOB3C 1 46607715 46616891 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOB4 2 197515571 197553699 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOBP 3 39467198 39529479 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOCOS 18 36187519 36272157 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 18 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOCS1 6 39899578 39934551 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOCS2 5 53095679 53110063 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOCS3 20 50958826 50963931 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOG 6 29656981 29672372 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOGAT1 2 222671786 222709930 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOGAT2 11 75717819 75732958 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOGAT3 7 101195007 101201038 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOGS 2 74461057 74465410 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOK 14 102224500 102305200 FALSE 996 -0.579401018683582 31 102193509 102726551 NA 2 NA NA 2 NA 533042 NA 7 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MON1A 3 49907160 49930173 FALSE 257 1.00028262071039 83 49886987 49910415 0.593481580287395 8 NA 0.593481580287395 8 NA 23428 NA 2 10 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MON1B 16 77190835 77202405 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MON2 12 62466817 62600479 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 39 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORC1 3 108958239 109118142 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 28 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORC2 22 30925130 30968298 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 27 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORC3 21 36320189 36386148 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORC4 23 106813871 107000244 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 54 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORF4L1 15 78810487 78898133 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORF4L2 23 103675496 103688158 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 4 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORN1 1 2321253 2391707 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORN2 2 38875962 38929072 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORN3 12 121648742 121672631 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORN4 10 97614553 97633500 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MORN5 9 122159908 122200088 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOS 8 56112942 56113982 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOSMO 16 22007638 22087534 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOSPD1 23 134887626 134915267 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOSPD2 23 14873441 14922327 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOSPD3 7 100612102 100615384 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOV10 1 112673141 112700746 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 21 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOV10L1 22 50089879 50161690 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 30 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MOXD1 6 132296055 132401545 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 13 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPC1 6 166364919 166383013 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPC1L 23 40623566 40624136 FALSE 1468 -0.326446288418871 44 40143046 41232371 0.18904974046126 3 NA 0.18904974046126 3 NA 1089325 NA 6 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPC2 1 167916729 167937040 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPDU1 17 7583529 7592789 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPDZ 9 13105704 13279590 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 50 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPEG1 11 59208510 59212951 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPG 16 77007 85853 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPHOSPH10 2 71130314 71150101 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPHOSPH6 16 82147798 82170226 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPHOSPH8 13 19633681 19673459 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPHOSPH9 12 123152320 123244014 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPI 15 74890005 74902219 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPIG6B 6 31718594 31726714 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPL 1 43337849 43352772 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPLKIP 7 40126023 40134652 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPND 19 4343527 4360086 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPO 17 58269856 58280935 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPP1 23 154778684 154821007 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPP2 17 43875357 43909711 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPP3 17 43800799 43833170 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 19 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPP4 2 201644870 201698694 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 21 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPP5 14 67241109 67335819 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPP6 7 24573268 24694193 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPP7 10 28050993 28334486 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPPE1 18 11882622 11909223 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPPED1 22 43411196 43507848 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPPED2 11 30384493 30586872 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPRIP 17 17042545 17217679 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 43 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPST 22 37019635 37029822 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPV17 2 27309492 27325680 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPV17L 16 15395754 15413268 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPV17L2 19 18193182 18196948 FALSE 1320 -0.249880581547498 49 18177171 18281093 0.331933131290263 3 NA 0.331933131290263 3 NA 103922 NA 9 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPZ 1 161304735 161309972 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPZL1 1 167721192 167791919 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPZL2 11 118253403 118264536 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MPZL3 11 118226690 118252350 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MR1 1 181033425 181061938 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRAP 21 32291813 32314784 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRAP2 6 84033756 84090881 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRAS 3 138347648 138405534 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRC1 10 17809344 17911170 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRC2 17 62627401 62693597 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 34 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRE11 11 94415578 94493908 TRUE 808 0.966628121201022 82 94415723 94493745 0.593481580287395 8 NA 0.593481580287395 8 NA 78022 NA 2 46 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MREG 2 215942805 216034096 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRFAP1 4 6640091 6642745 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRFAP1L1 4 6707701 6709880 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGBP 20 62796453 62801738 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRD 11 68980021 68980986 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRE 11 3227698 3232386 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRF 11 69004395 69013409 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRG 11 3217944 3218813 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRX1 11 18933813 18939507 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRX2 11 19054455 19060681 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRX3 11 18120955 18138480 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRGPRX4 11 18172837 18174280 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRI1 19 13764532 13774282 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRLN 10 59736692 59756041 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRM1 17 36601572 36608971 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRM2 7 2234231 2242198 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRM3 17 782273 792509 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRNIP 5 179835133 179862173 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRO 18 50795120 50825402 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH1 8 144148016 144261940 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 19 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH2A 2 233775679 233833423 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 41 12 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH2B 5 40998017 41071342 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 42 8 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH6 8 143566187 143572971 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 15 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH7 1 54641754 54710266 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH7-TTC4 1 54641786 54742308 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 38 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH8 20 37101226 37179588 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 23 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MROH9 1 170935471 171064765 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL1 4 77862520 77952790 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL10 17 47823272 47831534 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL11 11 66435075 66466738 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL12 17 81703357 81707526 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL13 8 120380761 120445402 FALSE 635 -0.240283647650564 49 119593820 120497470 0.331933131290263 3 NA 0.331933131290263 3 NA 903650 NA 7 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL14 6 44113454 44127457 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL15 8 54135210 54147901 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL16 11 59806135 59810872 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL17 11 6680782 6683401 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL18 6 159789812 159798436 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL19 2 75646783 75690851 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL2 6 43054029 43059806 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL20 1 1401908 1407313 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL21 11 68891276 68903835 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL22 5 154941070 154969411 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL23 11 1947278 1984522 FALSE 759 1.20431609491167 87 1956412 2149508 0.593481580287395 9 NA 0.593481580287395 9 NA 193096 NA 3 1 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL24 1 156737303 156741590 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL27 17 50367857 50373214 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL28 16 366969 371289 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL3 3 131462212 131502983 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL30 2 99181079 99197626 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL32 7 42932200 42948958 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL33 2 27771717 27988087 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL34 19 17292609 17306843 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL35 2 86199355 86213794 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL36 5 1798386 1801366 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL37 1 54184041 54225464 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL38 17 75898643 75905413 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL39 21 25585656 25607517 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL4 19 10251901 10260045 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL40 22 19431902 19436075 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL41 9 137551199 137552555 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL42 12 93467488 93516213 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL43 10 100969458 100987515 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 25 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL44 2 223957404 223967714 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL45 17 38297023 38323218 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 8 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL46 15 88459476 88467419 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL47 3 179588285 179604654 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL48 11 73787316 73865133 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL49 11 65122183 65127371 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL50 9 101387633 101398614 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL51 12 6491886 6493841 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL52 14 22829879 22835037 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL53 2 74471958 74473322 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL54 19 3762664 3768575 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL55 1 228106679 228109312 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL57 13 21176645 21179084 FALSE 934 -0.998766566201071 11 21140591 21604174 0.593443012170704 1 0 0.593443012170704 1 0 463583 1 5 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL58 17 75012670 75021261 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPL9 1 151759643 151763564 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS10 6 42206801 42217865 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS11 15 88467453 88480773 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS12 19 38930548 38933162 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS14 1 175010789 175023425 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS15 1 36455718 36464437 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS16 10 73248843 73252693 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS17 7 55951819 55956501 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS18A 6 43671303 43687791 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS18B 6 30617709 30626395 FALSE 442 -0.707992332207312 21 30547554 30653233 0.328777186374237 1 0 0.328777186374237 1 0 105679 1 8 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS18C 4 83455932 83469735 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 18 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS2 9 135499984 135504673 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS21 1 150293720 150308979 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS22 3 139005806 139357223 FALSE 290 0.492429452862148 71 138633043 139347013 0.593481580287395 5 NA 0.593481580287395 5 NA 713970 NA 8 18 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS23 17 57834781 57850056 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS24 7 43866558 43869893 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS25 3 15042460 15065335 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS26 20 3045945 3048254 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS27 5 72219409 72320646 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS28 8 79918717 80030289 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS30 5 44808925 44820428 FALSE 375 2.07572131362409 117 44300254 45262566 0.593481580287395 18 NA 0.593481580287395 18 NA 962312 NA 3 8 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS31 13 40729135 40771173 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS33 7 141002610 141015228 FALSE 567 -0.346454323038498 44 141006475 141708994 0.18904974046126 3 NA 0.18904974046126 3 NA 702519 NA 5 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS34 16 1771890 1773155 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS35 12 27710773 27756295 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS36 5 69217760 69230129 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS5 2 95087207 95149434 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS6 21 34073224 34143034 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS7 17 75261674 75266373 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRPS9 2 105037983 105099960 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRRF 9 122264603 122331343 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRS2 6 24402908 24426194 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRTFA 22 40410281 40636702 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRTFB 16 14071321 14266773 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRTO4 1 19251539 19260128 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MRVI1 11 10573091 10693988 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 23 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A1 11 60455752 60470760 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A10 11 60785348 60801305 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A12 11 60492778 60507430 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A13 11 60515413 60542721 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A14 11 60378530 60417756 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 18 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A15 11 60756953 60776732 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A18 11 60729304 60744212 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A2 11 60088261 60098466 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A3 11 60056587 60071128 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A4A 11 60185702 60317944 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A4E 11 60201253 60243088 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A5 11 60429589 60455214 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A6A 11 60172014 60184666 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A6E 11 60334831 60396596 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A7 11 60378482 60395951 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MS4A8 11 60699574 60715811 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSANTD1 4 3244369 3271738 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSANTD2 11 124766498 124800673 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSANTD3 9 100427156 100451711 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSANTD3-TMEFF1 9 100442271 100577636 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSANTD4 11 105995623 106022403 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSC 8 71841549 71844468 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSGN1 2 17816496 17817101 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSH2 2 47402969 47663146 TRUE 135 0.236810884901957 64 47340190 47906327 0.593443012170704 4 NA 0.593443012170704 4 NA 566137 NA 5 69 6 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSH3 5 80654648 80876460 TRUE 385 0.421363017639403 70 80654487 80876817 0.569287299993522 5 NA 0.569287299993522 5 NA 222330 NA 2 37 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSH4 1 75796882 75913238 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSH5 6 31739948 31762834 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 24 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSH5-SAPCD1 6 31740020 31764851 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 29 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSH6 2 47695530 47810101 TRUE 135 0.236810884901957 64 47340190 47906327 0.593443012170704 4 NA 0.593443012170704 4 NA 566137 NA 5 45 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSI1 12 120341330 120369180 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSI2 17 57255851 57684685 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSL1 17 40122298 40136916 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSL2 3 136148922 136197241 FALSE 287 -0.600619096773342 28 136023121 136329935 NA 2 NA NA 2 NA 306814 NA 3 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSL3 23 11758159 11775772 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSLN 16 760762 768865 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSLNL 16 769428 783370 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSMB 10 46033307 46046269 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSMO1 4 165327623 165343160 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSMP 9 35752990 35756613 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSN 23 65588377 65741931 FALSE 1487 -0.50792792543453 34 64268792 66605144 NA 2 NA NA 2 NA 2336352 NA 8 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSR1 8 16107878 16567490 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSRA 8 10054268 10428891 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSRB1 16 1938210 1943326 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSRB2 10 23095506 23122013 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSRB3 12 65278643 65491430 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSS51 10 73423579 73433561 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MST1 3 49683947 49689501 TRUE 255 1.11896479522952 84 49682329 49689514 0.593481580287395 9 NA 0.593481580287395 9 NA 7185 NA 3 18 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MST1R 3 49887002 49903873 FALSE 257 1.00028262071039 83 49886987 49910415 0.593481580287395 8 NA 0.593481580287395 8 NA 23428 NA 2 26 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSTN 2 190055697 190062729 FALSE 196 0.560581351590903 73 189784514 190057314 0.593481580287395 5 NA 0.593481580287395 5 NA 272800 NA 3 6 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSTO1 1 155610205 155614967 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 13 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSX1 4 4859666 4863936 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MSX2 5 174724533 174730893 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1A 16 56638666 56640087 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1B 16 56651899 56653204 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1E 16 56625475 56627112 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1F 16 56657694 56660698 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1G 16 56666731 56668065 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1H 16 56669814 56671129 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1HL1 1 237004103 237004418 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1M 16 56632233 56633986 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT1X 16 56682424 56684196 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT2A 16 56608199 56609497 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT3 16 56589074 56591088 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MT4 16 56565049 56568957 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTA1 14 105419820 105470729 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 21 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTA2 11 62593214 62601840 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTA3 2 42494569 42756947 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTAP 9 21802543 21937651 TRUE 656 -0.808666408586576 15 20715404 21839160 0.449390955025597 1 0 0.449390955025597 1 0 1123756 1 21 51 6 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTBP 8 120445400 120542133 FALSE 635 -0.240283647650564 49 119593820 120497470 0.331933131290263 3 NA 0.331933131290263 3 NA 903650 NA 7 26 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTCH1 6 36968141 36986298 FALSE 462 -0.524992064635535 34 36717398 37027971 NA 2 NA NA 2 NA 310573 NA 7 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTCH2 11 47617315 47642623 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTCL1 18 8705661 8832778 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 27 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTCP1 23 155061622 155147937 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTDH 8 97644179 97728770 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 14 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTERF1 7 91692008 91880720 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTERF2 12 106977291 106987166 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTERF3 8 96239398 96261610 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTERF4 2 241072169 241102332 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTF1 1 37809567 37859620 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTF2 1 93079235 93139081 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTFMT 15 65001512 65029639 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTFP1 22 30425530 30429053 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTFR1 8 65644734 65771261 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTFR1L 1 25818640 25832942 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTFR2 6 136231024 136250335 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTG1 10 133394094 133421307 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTG2 20 62183029 62203568 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTHFD1 14 64388031 64463457 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTHFD1L 6 150865549 151101887 FALSE 504 -0.89879326611718 13 150866011 151348914 0.522719719214577 1 0 0.522719719214577 1 0 482903 1 2 29 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTHFD2 2 74198562 74217565 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTHFD2L 4 74114174 74303099 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTHFR 1 11785723 11806920 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 20 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTHFS 15 79833585 79897379 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTHFSD 16 86530176 86555235 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTIF2 2 55236595 55269347 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTIF3 13 27435643 27450591 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTLN 2 110211529 110245420 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTM1 23 150568619 150673322 FALSE 1522 -0.468653153264543 37 150592603 151672444 NA 2 NA NA 2 NA 1079841 NA 7 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR1 23 150692971 150765103 FALSE 1522 -0.468653153264543 37 150592603 151672444 NA 2 NA NA 2 NA 1079841 NA 7 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR10 15 30938941 30991607 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR11 1 149928651 149936869 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR12 5 32226994 32313009 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR14 3 9649433 9702393 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR2 11 95832882 95925315 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR3 22 29883155 30030866 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR4 17 58489529 58517905 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 24 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR6 13 25246201 25288009 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR7 8 17298030 17413528 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 16 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR8 23 64268081 64395431 FALSE 1486 0.901493559933209 81 64182335 64268644 0.593481580287395 7 NA 0.593481580287395 7 NA 86309 NA 3 16 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTMR9 8 11284416 11328146 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTNR1A 4 186533655 186555567 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTNR1B 11 92969720 92985066 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTO1 6 73461578 73509236 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTOR 1 11106535 11262507 FALSE 3 0.104665361433966 61 11106543 11262554 0.315195151543259 5 NA 0.315195151543259 5 NA 156011 NA 2 79 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTPAP 10 30309801 30374448 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTPN 7 135926761 135977353 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTR 1 236795281 236903981 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 35 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTREX 5 55307760 55425581 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRF1 13 41216369 41263577 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRF1L 6 152987362 153002685 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 9 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L1 17 22523111 22524663 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L10 23 55181391 55182920 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L3 20 57358442 57359980 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 1 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L4 16 3370979 3372740 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L5 10 55599303 55600041 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 1 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L6 7 142666272 142667718 FALSE 569 -0.436854664085822 37 141973117 142749531 NA 2 NA NA 2 NA 776414 NA 6 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L7 10 37601440 37602974 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 1 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRNR2L8 11 10507887 10509189 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 1 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTRR 5 7851186 7906025 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 27 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTSS1 8 124550790 124728429 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTSS1L 16 70661204 70686066 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTTP 4 99563761 99623999 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTURN 7 30134810 30162762 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTUS1 8 17643795 17800917 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 27 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTUS2 13 28820348 29505947 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTX1 1 155208699 155213824 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTX2 2 176269395 176338025 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MTX3 5 79976731 79991265 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC1 1 155185824 155192916 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC12 7 100969623 101018949 FALSE 547 0.300731644412637 65 100952063 100992094 0.593443012170704 4 2 0.593443012170704 4 2 40031 2 2 62 24 TRUE TETRAPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC13 3 124905442 124953819 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC15 11 26559033 26572233 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC16 19 8848844 8981342 FALSE 1289 0.231877645674871 64 8849014 8932719 0.593443012170704 4 NA 0.593443012170704 4 NA 83705 NA 1 226 52 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC17 7 101020072 101058745 FALSE 549 -0.785997246848303 18 101006566 101031719 0.387809979850725 1 0 0.387809979850725 1 0 25153 1 2 60 19 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC19 12 40393395 40570832 FALSE 863 -0.717747500660561 19 38323881 40466037 0.593443012170704 1 0 0.593443012170704 1 0 2142156 1 8 196 50 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC2 11 1074875 1110511 FALSE 754 -0.690039944076763 25 1019511 1093588 0.276933305076759 1 0 0.276933305076759 1 0 74077 1 2 61 4 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC20 3 195720882 195741123 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 10 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC21 6 30983718 30989903 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 8 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC22 6 31010474 31035402 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 23 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC3A 7 100949555 100968346 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 25 21 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC4 3 195746765 195812277 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 42 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC5AC 11 1157953 1201138 FALSE 756 -0.715013209078529 21 1099018 1241470 0.328777186374237 1 0 0.328777186374237 1 0 142452 1 3 42 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC5B 11 1223066 1262172 FALSE 756 -0.715013209078529 21 1099018 1241470 0.328777186374237 1 0 0.328777186374237 1 0 142452 1 3 97 14 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC6 11 1012821 1036706 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 45 12 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUC7 4 70430492 70482997 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUCL1 12 54830519 54858393 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUCL3 6 30934523 30954221 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 18 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUL1 1 20499448 20508161 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUM1 19 1354711 1378431 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUM1L1 23 106168305 106208956 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUS81 11 65857126 65867653 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 17 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUSK 9 110668771 110801620 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUSTN1 3 52833114 52835219 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUT 6 49430360 49463191 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 15 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MUTYH 1 45329163 45340470 TRUE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 20 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MVB12A 19 17405722 17433724 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MVB12B 9 126326849 126507041 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MVD 16 88651935 88663161 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MVK 12 109573255 109598117 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 11 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MVP 16 29820394 29848039 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MX1 21 41420304 41459214 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 15 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MX2 21 41361943 41409390 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MXD1 2 69897688 69942945 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MXD3 5 177301461 177312757 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MXD4 4 2247432 2262294 FALSE 326 -0.697910858685582 25 1983477 2331072 0.276933305076759 1 0 0.276933305076759 1 0 347595 1 7 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MXI1 10 110207605 110287365 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MXRA5 23 3308565 3346641 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 37 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MXRA7 17 76672551 76711016 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MXRA8 1 1352689 1361777 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYADM 19 53866223 53876437 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYADML2 17 81939645 81947233 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYB 6 135181315 135219173 FALSE 493 -0.929955024876043 13 134918433 135189741 0.522719719214577 1 0 0.522719719214577 1 0 271308 1 3 68 15 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBBP1A 17 4538897 4555631 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBL1 8 66562175 66614247 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBL2 20 43667019 43716496 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBPC1 12 101568353 101686018 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBPC2 19 50432903 50466321 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBPC3 11 47331397 47352702 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 37 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBPH 1 203167811 203175813 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYBPHL 1 109292365 109307041 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYC 8 127735434 127741434 FALSE 637 4.54977513834599 137 125436307 127746790 0.593481580287395 107 NA 0.593481580287395 107 NA 2310483 NA 4 8 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYCBP 1 38862964 38874105 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYCBP2 13 77044655 77327050 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 98 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYCBPAP 17 50508384 50531501 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYCL 1 39895426 39902256 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 19 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYCN 2 15940564 15947007 FALSE 112 3.63213843975277 136 15628538 15949726 0.593481580287395 56 NA 0.593481580287395 56 NA 321188 NA 2 14 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYCT1 6 152697895 152724567 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYD88 3 38138478 38143022 FALSE 247 2.29703685607572 121 38138742 38142995 0.593481580287395 21 NA 0.593481580287395 21 NA 4253 NA 1 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYDGF 19 4641374 4670370 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYEF2 15 48134631 48178517 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYEOV 11 69294138 69367726 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 5 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYF5 12 80716912 80719673 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYF6 12 80707498 80709474 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH1 17 10492307 10518543 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 41 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH10 17 8474205 8630761 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 44 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH11 16 15703172 15857033 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 45 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH13 17 10300865 10373130 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 41 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH14 19 50188186 50310544 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 47 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH15 3 108380369 108529322 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 43 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH2 17 10521148 10549957 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 41 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH3 17 10628526 10657309 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 41 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH4 17 10443290 10469559 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 41 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH6 14 23381990 23408277 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 43 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH7 14 23412738 23435718 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 41 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH7B 20 34975403 35002437 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 45 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH8 17 10390322 10421950 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 40 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYH9 22 36281277 36388067 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 44 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL1 2 210290150 210315190 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL10 7 101613325 101629296 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 6 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL12A 18 3247481 3256236 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL12B 18 3261479 3278431 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL2 12 110910819 110920722 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL3 3 46857872 46882169 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL4 17 47200446 47223679 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL5 4 673580 682033 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL6 12 56158161 56163496 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL6B 12 56152256 56159647 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL7 7 44138864 44141332 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYL9 20 36541484 36551447 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYLIP 6 16129125 16148248 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYLK 3 123610049 123884331 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 39 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYLK2 20 31819308 31834689 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYLK3 16 46703369 46790407 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYLK4 6 2663629 2750966 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYLPF 16 30370934 30377991 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYMK 9 133514586 133528612 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYMX 6 44216939 44218236 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 1 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYNN 3 169772831 169789716 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO10 5 16661914 16936276 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 49 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO15A 17 18108706 18179806 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 78 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO15B 17 75588058 75626501 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 66 21 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO16 13 108596152 109208007 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 42 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO18A 17 29071124 29180412 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 49 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO18B 22 25742144 26031041 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 53 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO19 17 36495633 36543435 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 32 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1A 12 57028517 57051198 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1B 2 191245185 191425389 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1C 17 1464186 1492812 FALSE 1135 -0.809094444314198 15 1361226 1614943 0.449390955025597 1 0 0.449390955025597 1 0 253717 1 6 32 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1D 17 32492522 32877177 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 25 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1E 15 59132434 59372900 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 34 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1F 19 8520790 8577577 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1G 7 44962662 44979098 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO1H 12 109347903 109455523 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 32 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO3A 10 25934071 26212536 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 36 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO3B 2 170178145 170655171 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 36 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO5A 15 52307283 52529050 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 45 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO5B 18 49822813 50195093 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 42 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO5C 15 52192322 52295798 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 43 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO6 6 75749192 75919537 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 35 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO7A 11 77128264 77215241 FALSE 803 -0.341739698901511 44 76796634 77285099 0.18904974046126 3 NA 0.18904974046126 3 NA 488465 NA 7 51 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO7B 2 127535802 127637729 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 51 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO9A 15 71822289 72118577 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 52 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYO9B 19 17075781 17214537 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 48 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOC 1 171635417 171652683 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOCD 17 12665890 12768949 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOCOS 1 171600621 171638799 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOD1 11 17719568 17722131 FALSE 766 0.163406610939964 63 17714675 17772558 0.54220702508464 4 NA 0.54220702508464 4 NA 57883 NA 2 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOF 10 93306429 93482317 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 53 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOG 1 203083132 203086036 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOM1 18 3066807 3220108 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 42 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOM2 8 2045040 2165552 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 36 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOM3 1 24056035 24112175 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 41 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYORG 9 34366670 34376853 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOT 5 137867791 137887851 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOZ1 10 73631654 73641757 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOZ2 4 119135784 119187789 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYOZ3 5 150660874 150679365 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYPN 10 68106117 68212017 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 26 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYPOP 19 45890020 45902604 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYRF 11 61752642 61788518 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 32 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYRFL 12 69825304 69959097 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 25 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYRIP 3 39808914 40260321 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 18 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYSM1 1 58654739 58700092 FALSE 22 -0.492354325413414 37 58534040 58700034 NA 2 NA NA 2 NA 165994 NA 4 23 6 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYT1 20 64102394 64242253 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 31 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYT1L 2 1789113 2331664 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MYZAP 15 57591941 57685364 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 13 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MZB1 5 139387480 139390081 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MZF1 19 58561931 58573575 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MZT1 13 72708357 72727687 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MZT2A 2 131464900 131492743 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 MZT2B 2 130181737 130190729 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 N4BP1 16 48538726 48620148 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 N4BP2 4 40056826 40158252 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 N4BP2L1 13 32400723 32428311 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 N4BP2L2 13 32432417 32538885 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 N4BP3 5 178113443 178126087 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 N6AMT1 21 28872191 28885371 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA10 23 153929242 153935223 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA11 4 79225694 79326050 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA15 4 139301455 139420033 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA16 13 41311205 41377030 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA20 20 20017116 20033655 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA25 12 112026689 112109022 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA30 14 57390544 57415917 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA35 9 85941146 86022298 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 22 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA38 17 7856685 7885238 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA40 11 63938959 63957328 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA50 3 113716460 113746300 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA60 16 3443611 3486963 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAA80 3 50296402 50299421 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAAA 4 75913657 75941051 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAALAD2 11 90131515 90192894 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAALADL1 11 65044818 65058549 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAALADL2 3 174438573 175810552 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAB1 2 190646746 190692766 FALSE 197 -0.634190880282039 28 190057538 191008950 NA 2 NA NA 2 NA 951412 NA 9 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAB2 12 57088894 57095476 FALSE 887 2.08690517988165 117 57089277 57129157 0.593481580287395 18 NA 0.593481580287395 18 NA 39880 NA 3 18 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NABP1 2 191678068 191696659 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NABP2 12 56222015 56229854 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NACA 12 56712428 56731628 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 17 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NACA2 17 61590426 61591202 FALSE 1211 1.49629747496849 98 61482947 61861969 0.593481580287395 12 NA 0.593481580287395 12 NA 379022 NA 3 3 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NACAD 7 45080438 45088914 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NACC1 19 13118103 13141141 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NACC2 9 136006537 136095285 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NADK 1 1751232 1780457 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NADK2 5 36192592 36242279 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 14 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NADSYN1 11 71453109 71524107 FALSE 796 -0.528927183156658 34 70103077 71501385 NA 2 NA NA 2 NA 1398308 NA 7 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAE1 16 66802875 66873256 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 29 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAF1 4 163110073 163166921 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAGA 22 42058354 42070842 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAGK 2 71064344 71079805 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAGLU 17 42536172 42544449 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAGPA 16 5024844 5034141 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAGS 17 44004546 44009063 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAIF1 9 128061233 128068206 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAIP 5 70968483 71025114 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NALCN 13 101053776 101416492 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 44 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAMPT 7 106248285 106286326 FALSE 554 2.44912760521518 123 106248413 107045189 0.593481580287395 24 NA 0.593481580287395 24 NA 796776 NA 4 35 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANOG 12 7787794 7799141 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 5 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANOGNB 12 7765216 7774121 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANOGP8 15 35084193 35085110 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANOS1 10 119029716 119033732 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANOS2 19 45913214 45914870 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANOS3 19 13862063 13880757 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANP 20 25612935 25624175 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NANS 9 98056739 98083075 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAP1L1 12 76036587 76085033 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAP1L2 23 73212299 73214848 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAP1L3 23 93670930 93673568 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAP1L4 11 2944431 2992377 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAP1L5 4 88695915 88697829 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAPA 19 47487637 47515240 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAPB 20 23374519 23421519 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAPEPLD 7 103099776 103149560 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAPG 18 10525905 10552761 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAPRT 8 143574785 143578649 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAPSA 19 50358477 50365830 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NARF 17 82458180 82490537 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NARS 18 57600656 57622213 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NARS2 11 78435961 78574874 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NASP 1 45583846 45618904 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT1 8 18170477 18223689 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT10 11 34105602 34147670 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT14 19 55485004 55487568 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT16 7 101170493 101180276 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT2 8 18391245 18401218 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT8 2 73640832 73642393 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT8L 4 2059512 2069089 FALSE 326 -0.697910858685582 25 1983477 2331072 0.276933305076759 1 0 0.276933305076759 1 0 347595 1 7 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAT9 17 74770547 74776367 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NATD1 17 21238870 21253410 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAV1 1 201622885 201826969 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 38 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAV2 11 19350724 20121598 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 55 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAV3 12 77324641 78213008 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 52 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAXD 13 110615460 110639993 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NAXE 1 156591762 156594299 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBAS 2 15166909 15561330 FALSE 111 1.38092266252683 93 12723544 15627171 0.593481580287395 11 NA 0.593481580287395 11 NA 2903627 NA 4 57 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBDY 23 56729241 56818380 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBEA 13 34942287 35673022 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 68 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBEAL1 2 203014879 203226378 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 60 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBEAL2 3 46979683 47009703 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 57 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBL1 1 19596979 19658456 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBN 8 89933336 90003228 TRUE 626 2.79231015179508 128 89924458 89935309 0.593481580287395 31 NA 0.593481580287395 31 NA 10851 NA 2 37 13 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF1 1 16562319 16613562 FALSE 9 -0.232434138346071 47 16409849 16760937 0.593443012170704 3 1 0.593443012170704 3 1 351088 2 4 18 10 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF10 1 146064699 146144804 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF11 1 148102046 148152322 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF12 1 146938744 146996202 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF14 1 148531385 148679751 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF15 1 144421386 144461674 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF19 1 149390623 149556361 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF20 1 145289900 145405778 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF26 1 120723923 120841481 FALSE 51 -0.542057961132992 31 120176337 120809863 NA 2 NA NA 2 NA 633526 NA 2 13 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF3 1 21440128 21485005 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF4 1 108223341 108244081 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF6 1 108450282 108471002 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBPF9 1 149054027 149103561 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NBR1 17 43170481 43211689 FALSE 1191 -0.515679675839481 34 43146165 43526482 NA 2 NA NA 2 NA 380317 NA 6 25 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCALD 8 101686543 102124907 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAM1 11 112961247 113278436 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 26 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAM2 21 20998315 21543329 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAN 19 19211973 19252233 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAPD2 12 6493356 6531955 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 31 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAPD3 11 134150119 134225454 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 36 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAPG 4 17810902 17844862 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAPG2 7 158631311 158704829 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAPH 2 96335787 96373845 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCAPH2 22 50508216 50523472 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCBP1 9 97633626 97673748 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCBP2 3 196935402 196942597 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCBP2-AS2 3 196942623 196943540 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCBP2L 23 107774899 107795829 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCBP3 17 3802165 3846251 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCCRP1 19 39196961 39201884 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCDN 1 35557473 35567274 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCEH1 3 172630249 172711218 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCF1 7 74773962 74789315 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCF2 1 183555563 183590876 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCF4 22 36860988 36878015 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCK1 3 136862208 136949823 FALSE 288 -0.196524450016373 52 136336203 138077598 0.426118104232275 3 NA 0.426118104232275 3 NA 1741395 NA 8 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCK2 2 105744897 105894274 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCKAP1 2 182909115 183038858 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 32 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCKAP1L 12 54497711 54548238 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 31 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCKAP5 2 132671799 133568463 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 33 6 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCKAP5L 12 49791146 49828750 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCKIPSD 3 48673844 48686364 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCL 2 231453531 231483641 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCLN 19 3185563 3209575 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCMAP 1 24556111 24609328 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOA1 2 24491914 24770702 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOA2 8 70109762 70403805 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 27 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOA3 20 47501902 47656877 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 43 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOA4 10 46005088 46030714 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOA5 20 46060985 46089952 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOA6 20 34689097 34825649 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 37 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOA7 6 125781161 125932030 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOR1 17 16029157 16218185 TRUE 1152 2.29501109641877 121 16029260 16032317 0.593481580287395 21 NA 0.593481580287395 21 NA 3057 NA 2 82 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCOR2 12 124324415 124567589 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 58 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCR1 19 54906150 54916140 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCR2 6 41335655 41350887 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCR3 6 31588895 31592985 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCR3LG1 11 17351726 17377341 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCS1 9 130172578 130237304 FALSE 695 -0.751937959899922 18 129829569 130284582 0.387809979850725 1 0 0.387809979850725 1 0 455013 1 6 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NCSTN 1 160343272 160358952 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDC1 1 53765460 53838860 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDC80 18 2571511 2616635 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDE1 16 15643267 15726353 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDEL1 17 8413131 8490411 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDFIP1 5 142108505 142154443 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDFIP2 13 79481124 79556075 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDN 15 23685400 23687330 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDNF 4 121035613 121073021 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDOR1 9 137205685 137217009 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDP 23 43948776 43973504 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDRG1 8 133237171 133302022 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDRG2 14 21016763 21070872 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDRG3 20 36651766 36746078 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDRG4 16 58462846 58513628 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDST1 5 150485818 150558211 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 19 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDST2 10 73801911 73811798 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDST3 4 118033618 118258648 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDST4 4 114827763 115113876 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA1 23 119871487 119876662 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA10 2 239892450 240025402 FALSE 230 -0.660015943821219 25 239225010 240046012 0.276933305076759 1 0 0.276933305076759 1 0 821002 1 4 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA11 19 5891276 5904006 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA12 12 94897055 95003770 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA13 19 19515736 19529054 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA2 5 140638740 140647785 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA3 19 54102728 54109257 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA4 7 10931951 10940256 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA4L2 12 57234903 57240715 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA5 7 123536997 123558255 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA6 22 42085525 42090955 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 3 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA7 19 8308768 8321396 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA8 9 122144058 122159819 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFA9 12 4649095 4694317 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAB1 16 23581002 23596356 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF1 15 41387349 41402519 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF2 5 60945129 61153037 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF3 3 49020459 49023495 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF4 6 96889313 96897881 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF5 20 13784950 13821582 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF6 8 94895767 95116455 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF7 2 37231631 37253403 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFAF8 17 81239239 81241281 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB1 14 92116122 92121917 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB10 16 1959508 1961975 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB11 23 47142216 47145504 FALSE 1473 0.743170439744717 77 47028074 47191894 0.593481580287395 6 NA 0.593481580287395 6 NA 163820 NA 5 7 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB2 7 140690777 140722790 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 18 0 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB3 2 201071433 201085750 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB4 3 120596309 120602500 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB5 3 179604690 179627647 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB6 9 32552999 32573184 FALSE 659 -0.671695704683809 25 32466279 32630114 0.276933305076759 1 0 0.276933305076759 1 0 163835 1 5 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB7 19 14566078 14572062 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB8 10 100523740 100530000 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFB9 8 124539101 124580648 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFC1 4 139266880 139302551 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFC2 11 78068304 78080219 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFC2-KCTD14 11 78016971 78079865 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS1 2 206114817 206159603 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS2 1 161197104 161214395 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS3 11 47565336 47584562 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS4 5 53560633 53683340 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS5 1 39026318 39034636 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS6 5 1801400 1816605 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS7 19 1383527 1395589 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFS8 11 68030617 68036644 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFV1 11 67605653 67612554 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFV2 18 9102630 9134345 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NDUFV3 21 42879644 42913304 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEB 2 151485336 151734487 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 181 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEBL 10 20779973 21174187 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 35 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECAB1 8 90791550 90959408 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECAB2 16 83968632 84002776 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 13 7 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECAB3 20 33657087 33674463 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECAP1 12 8076939 8097859 FALSE 842 -0.749785793032381 18 7924480 8175292 0.387809979850725 1 0 0.387809979850725 1 0 250812 1 7 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECAP2 1 16440672 16460078 FALSE 9 -0.232434138346071 47 16409849 16760937 0.593443012170704 3 1 0.593443012170704 3 1 351088 2 4 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECTIN1 11 119623408 119729084 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECTIN2 19 44846175 44889228 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECTIN3 3 111070071 111275563 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NECTIN4 1 161070995 161089599 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEDD1 12 96907223 96953777 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEDD4 15 55826922 55993746 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 36 8 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEDD4L 18 58044367 58401540 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 33 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEDD8 14 24216852 24232454 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEDD8-MDP1 14 24213955 24232352 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEDD9 6 11183298 11382348 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEFH 22 29480230 29491390 FALSE 1431 -0.769259292267371 18 29308534 29642163 0.387809979850725 1 0 0.387809979850725 1 0 333629 1 8 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEFL 8 24950955 24957110 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEFM 8 24913012 24919098 FALSE 589 -0.94638469752504 10 23845074 26044705 0.593443012170704 1 0 0.593443012170704 1 0 2199631 1 11 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEGR1 1 71395940 72282734 FALSE 27 0.97633820012075 82 71396014 72282539 0.593481580287395 8 NA 0.593481580287395 8 NA 886525 NA 1 41 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEIL1 15 75346955 75357114 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEIL2 8 11769639 11787346 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEIL3 4 177309836 177362943 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK1 4 169392857 169612629 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 35 4 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK10 3 27110085 27369460 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 39 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK11 3 131026850 131350465 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK2 1 211658657 211675630 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK3 13 52132639 52159861 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK4 3 52708449 52770949 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK5 13 52033611 52129078 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK6 9 124257606 124353307 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK7 1 198156963 198322420 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK8 17 28725897 28743455 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEK9 14 75079353 75127344 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NELFA 4 1982714 2041903 FALSE 326 -0.697910858685582 25 1983477 2331072 0.276933305076759 1 0 0.276933305076759 1 0 347595 1 7 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NELFB 9 137255173 137273546 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NELFCD 20 58981208 58995133 FALSE 1396 -0.20354273420644 52 58981312 59194662 0.426118104232275 3 NA 0.426118104232275 3 NA 213350 NA 6 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NELFE 6 31952087 31959110 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NELL1 11 20669551 21575681 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NELL2 12 44508275 44921848 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEMF 14 49782083 49853203 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEMP1 12 57055643 57088063 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEMP2 2 190504342 190534722 FALSE 197 -0.634190880282039 28 190057538 191008950 NA 2 NA NA 2 NA 951412 NA 9 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NENF 1 212432887 212446379 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEO1 15 73051710 73305206 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 31 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEPRO 3 113002440 113019861 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NES 1 156668763 156677397 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NET1 10 5412551 5458463 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NETO1 18 72742314 72868146 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NETO2 16 47077703 47143997 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEU1 6 31857659 31862906 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEU2 2 233032672 233035057 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEU3 11 74988134 75018893 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEU4 2 241808825 241817413 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEURL1 10 103493979 103592552 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEURL1B 5 172641266 172691540 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEURL2 20 45888625 45891287 FALSE 1386 0.148259010786639 63 45877825 45895143 0.54220702508464 4 NA 0.54220702508464 4 NA 17318 NA 5 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEURL3 2 96497643 96508109 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEURL4 17 7315628 7329393 FALSE 1142 0.21076670068814 64 7307353 7324199 0.593443012170704 4 NA 0.593443012170704 4 NA 16846 NA 4 34 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEUROD1 2 181673088 181680876 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEUROD2 17 39603536 39609777 FALSE 1173 -0.600812074431575 28 39564387 39699581 NA 2 NA NA 2 NA 135194 NA 8 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEUROD4 12 55019945 55030014 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEUROD6 7 31337461 31340894 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEUROG1 5 135534282 135535949 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEUROG2 4 112513516 112516172 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEUROG3 10 69571698 69573238 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEXMIF 23 74732856 74925485 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NEXN 1 77888513 77943895 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 16 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NF1 17 31094927 31382116 TRUE 1162 1.15409771633477 85 31090043 31387166 0.593481580287395 9 NA 0.593481580287395 9 NA 297123 NA 5 139 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NF2 22 29603556 29698598 TRUE 1431 -0.769259292267371 18 29308534 29642163 0.387809979850725 1 0 0.387809979850725 1 0 333629 1 8 39 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFAM1 22 42380410 42432395 FALSE 1445 -0.00462438440054337 56 42090800 42411747 0.593443012170704 3 NA 0.593443012170704 3 NA 320947 NA 4 7 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFASC 1 204828651 205022822 FALSE 84 0.0730039668890317 60 204410206 204979607 0.593443012170704 3 NA 0.593443012170704 3 NA 569401 NA 5 33 5 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFAT5 16 69565094 69704666 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFATC1 18 79395856 79529325 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFATC2 20 51386957 51562831 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFATC2IP 16 28950807 28967097 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFATC3 16 68084751 68229259 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFATC4 14 24365673 24379604 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFE2 12 54292111 54301121 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFE2L1 17 48048329 48061487 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFE2L2 2 177227595 177392697 FALSE 185 1.51147334544082 98 177215741 177392996 0.593481580287395 12 NA 0.593481580287395 12 NA 177255 NA 3 33 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFE2L3 7 26152240 26187125 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFE4 7 102973437 102988856 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFIA 1 60865259 61462793 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFIB 9 14081843 14398983 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFIC 19 3314403 3469217 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFIL3 9 91409045 91423862 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFIX 19 12995608 13098796 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKB1 4 102501329 102617302 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKB2 10 102394110 102402529 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKBIA 14 35401511 35404749 TRUE 971 2.93887380603694 131 35398118 35405933 0.593481580287395 34 NA 0.593481580287395 34 NA 7815 NA 1 12 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKBIB 19 38899700 38908893 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKBID 19 35887653 35902303 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKBIE 6 44258166 44265788 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKBIL1 6 31546870 31558829 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFKBIZ 3 101827991 101861022 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFRKB 11 129863636 129895590 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 29 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFS1 20 35668055 35699359 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFU1 2 69395750 69437628 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFX1 9 33290511 33371157 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFXL1 4 47847233 47914667 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFYA 6 41072945 41099976 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFYB 12 104117077 104138289 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NFYC 1 40691648 40771603 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NGB 14 77265483 77271312 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NGDN 14 23469688 23509862 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NGEF 2 232878686 233013272 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NGF 1 115285918 115338236 FALSE 40 -0.536195164432015 31 114718137 115663936 NA 2 NA NA 2 NA 945799 NA 7 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NGFR 17 49495293 49515017 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 9 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NGLY1 3 25718944 25790039 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NGRN 15 90265659 90278141 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHEJ1 2 219075317 219160865 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHLH1 1 160367067 160372848 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHLH2 1 115836377 115843917 FALSE 41 -0.81063338900568 15 115664208 116388119 0.449390955025597 1 0 0.449390955025597 1 0 723911 1 6 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHLRC1 6 18120440 18122687 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHLRC2 10 113854661 113917194 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHLRC3 13 39038306 39050109 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHLRC4 16 566996 569495 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHP2 5 178149460 178153967 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHS 23 17375420 17735994 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHSL1 6 138422043 138692571 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NHSL2 23 71910818 72161750 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 27 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NICN1 3 49422946 49429326 FALSE 254 -0.617285049863544 28 49413119 49681966 NA 2 NA NA 2 NA 268847 NA 7 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NID1 1 235975830 236065162 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 28 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NID2 14 52004803 52069228 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 26 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIF3L1 2 200889327 200903930 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIFK 2 121726945 121736923 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIM1K 5 43192071 43280850 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIN 14 50719763 50831121 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 39 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NINJ1 9 93121489 93134288 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NINJ2 12 564296 663779 FALSE 829 -0.407714329256422 41 409362 908739 NA 2 NA NA 2 NA 499377 NA 4 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NINL 20 25452705 25585517 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 27 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIP7 16 69337996 69343111 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPA1 15 22773063 22829791 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPA2 15 22838641 22868384 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPAL1 4 47914142 48040173 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPAL2 8 98189833 98294393 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPAL3 1 24415794 24472976 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPAL4 5 157460019 157474717 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPBL 5 36876759 37066413 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 55 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPSNAP1 22 29554808 29581337 FALSE 1431 -0.769259292267371 18 29308534 29642163 0.387809979850725 1 0 0.387809979850725 1 0 333629 1 8 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPSNAP2 7 55951793 56000181 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPSNAP3A 9 104747688 104760122 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIPSNAP3B 9 104764157 104777457 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NISCH 3 52455118 52493071 FALSE 260 -0.548533387558164 31 52412304 52540384 NA 2 NA NA 2 NA 128080 NA 7 31 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIT1 1 161118086 161125445 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NIT2 3 100334701 100361635 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKAIN1 1 31179745 31239554 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKAIN2 6 123804141 124825657 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKAIN3 8 62248591 62999652 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKAIN4 20 63240784 63272694 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKAP 23 119920672 119943772 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKAPD1 11 112074086 112085150 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKAPL 6 28259320 28260958 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKD1 16 50548330 50649249 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKD2 5 1008829 1038943 FALSE 368 -0.258104479076551 49 876120 1244670 0.331933131290263 3 NA 0.331933131290263 3 NA 368550 NA 6 12 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKG7 19 51371606 51372715 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKIRAS1 3 23891660 23946591 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKIRAS2 17 42011382 42025644 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKPD1 19 45149750 45158737 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKRF 23 119588337 119606443 FALSE 1506 0.819455598940904 79 119469687 119591248 0.593481580287395 7 NA 0.593481580287395 7 NA 121561 NA 4 10 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKTR 3 42600614 42648741 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX1-1 4 1402932 1406331 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX1-2 10 124445239 124450184 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX2-1 14 36516392 36521149 FALSE 973 2.4293379595694 123 36516618 36676439 0.593481580287395 24 NA 0.593481580287395 24 NA 159821 NA 3 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX2-2 20 21511010 21514026 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX2-3 10 99532933 99536524 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX2-4 20 21395367 21398028 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX2-5 5 173232109 173235357 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX2-6 8 23702451 23706598 FALSE 588 1.4180746303565 95 23675791 23844942 0.593481580287395 11 NA 0.593481580287395 11 NA 169151 NA 3 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX2-8 14 36580579 36582607 FALSE 973 2.4293379595694 123 36516618 36676439 0.593481580287395 24 NA 0.593481580287395 24 NA 159821 NA 3 4 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX3-1 8 23678693 23682927 TRUE 588 1.4180746303565 95 23675791 23844942 0.593481580287395 11 NA 0.593481580287395 11 NA 169151 NA 3 13 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX3-2 4 13540830 13545050 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX6-1 4 84491987 84498450 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX6-2 10 132783179 132786052 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NKX6-3 8 41645178 41650669 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLE1 17 35128753 35142315 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLGN1 3 173396284 174286644 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLGN2 17 7404874 7419860 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 13 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLGN3 23 71144831 71171201 FALSE 1492 1.41079831549961 93 71118808 71254970 0.593481580287395 11 NA 0.593481580287395 11 NA 136162 NA 4 15 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLGN4X 23 5840637 6228863 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLK 17 28041737 28196381 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLN 5 65722196 65871725 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRC3 16 3539033 3577400 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 24 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRC4 2 32224453 32265854 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRC5 16 56989485 57083531 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 54 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP1 17 5499427 5619424 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP10 11 7959424 7965426 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP11 19 55785397 55836800 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 17 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP12 19 53793603 53824394 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 17 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP13 19 55891699 55932336 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 19 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP14 11 7020446 7071308 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP2 19 54953130 55001142 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 20 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP2B 23 57677067 57680260 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP3 1 247416156 247449108 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP4 19 55836578 55881854 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP5 19 55999726 56061813 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 21 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP6 11 278365 285359 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP7 19 54923509 54966312 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 17 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP8 19 55947832 55988629 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 17 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRP9 19 55708432 55738402 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NLRX1 11 119166568 119184016 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMB 15 84655129 84658563 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 4 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMBR 6 142058330 142088799 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMD3 3 161104696 161253532 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME1 17 51153536 51162428 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME1-NME2 17 51153590 51171744 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME2 17 51165435 51171747 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME3 16 1770286 1771730 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME4 16 396725 410367 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME5 5 138115172 138139443 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME6 3 48290722 48301685 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME7 1 169132531 169367967 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME8 7 37848597 37900401 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NME9 3 138261437 138329886 FALSE 289 -0.630497384635561 28 138080656 138629115 NA 2 NA NA 2 NA 548459 NA 9 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMI 2 151270465 151290057 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 7 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMNAT1 1 9943428 9985501 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMNAT2 1 183248237 183418602 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMNAT3 3 139560180 139678017 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMRAL1 16 4461680 4495763 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMRK1 9 75060573 75088217 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMRK2 19 3933103 3942416 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMS 2 100470482 100483280 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMT1 17 45051610 45109016 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 12 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMT2 10 15102584 15168693 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMU 4 55595229 55636698 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMUR1 2 231523160 231530495 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NMUR2 5 152391532 152433368 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NNAT 20 37521206 37523693 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NNMT 11 114257787 114313285 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NNT 5 43602692 43707405 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOA1 4 56963370 56978823 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOB1 16 69741867 69754940 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOBOX 7 144397240 144410227 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOC2L 1 944204 959309 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOC3L 10 94333226 94362959 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOC4L 12 132144448 132152473 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOCT 4 139015789 139045939 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOD1 7 30424527 30478784 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOD2 16 50693588 50734041 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NODAL 10 70432315 70447951 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOG 17 56593699 56595590 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL10 2 10570766 10689987 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL11 17 67717833 67744531 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL12 22 37681673 37693478 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL3 16 67170154 67175735 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL4 18 33851100 34224952 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL4L 20 32443059 32585074 FALSE 1373 0.921004845427493 81 32358286 32833703 0.593481580287395 7 NA 0.593481580287395 7 NA 475417 NA 7 16 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL6 9 33461441 33473930 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL7 6 13615327 13632739 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL8 9 92297358 92325636 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOL9 1 6521347 6554535 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOLC1 10 102152176 102163871 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOM1 7 156949723 156973182 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOMO1 16 14833681 14896160 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOMO2 16 18417325 18562211 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOMO3 16 16232495 16294814 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NONO 23 71283192 71301168 FALSE 1493 -0.754063044834461 18 71290719 71305121 0.387809979850725 1 0 0.387809979850725 1 0 14402 1 2 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP10 15 34341713 34343177 FALSE 1006 2.30379328437551 121 34342117 34357743 0.593481580287395 22 NA 0.593481580287395 22 NA 15626 NA 2 2 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP14 4 2937933 2963385 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP16 5 176383938 176388975 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP2 12 6556863 6568691 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP53 19 47745522 47757058 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP56 20 2652145 2658393 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 13 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP58 2 202265716 202303666 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOP9 14 24299862 24309124 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOS1 12 117208142 117452170 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 33 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOS1AP 1 162069774 162370475 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOS2 17 27756766 27800499 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOS3 7 150990995 151014588 FALSE 574 -0.383372083232003 41 150947860 151064227 NA 2 NA NA 2 NA 116367 NA 7 27 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOSIP 19 49555711 49590262 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOSTRIN 2 168786539 168865514 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOTCH1 9 136494433 136545786 TRUE 706 1.43684729978738 95 136489486 136672674 0.593481580287395 11 NA 0.593481580287395 11 NA 183188 NA 2 61 8 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOTCH2 1 119911553 120069626 TRUE 49 1.72779416226713 103 119911590 119915891 0.593481580287395 14 NA 0.593481580287395 14 NA 4301 NA 1 80 10 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOTCH2NLA 1 146146203 146229026 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOTCH3 19 15159038 15200981 TRUE 1308 1.36203716475228 91 15159204 15192399 0.593481580287395 11 NA 0.593481580287395 11 NA 33195 NA 1 54 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOTCH4 6 32194843 32224067 TRUE 447 1.0971148624496 84 32194917 32223843 0.593481580287395 9 NA 0.593481580287395 9 NA 28926 NA 2 47 9 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOTO 2 73202258 73212513 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOTUM 17 81952507 81961840 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOV 8 119416306 119424353 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOVA1 14 26443093 26597754 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOVA2 19 45933734 45973546 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOX1 23 100843324 100874345 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOX3 6 155395370 155455903 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOX4 11 89324356 89498187 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOX5 15 68930525 69062743 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 24 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOXA1 9 137423350 137434406 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOXO1 16 1978917 1984192 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NOXRED1 14 77394021 77423517 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPAP1 15 24675868 24683393 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPAS1 19 47019820 47045775 FALSE 1351 -0.803313559004103 18 47021105 47209252 0.387809979850725 1 0 0.387809979850725 1 0 188147 1 4 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPAS2 2 100820152 100996829 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPAS3 14 32934933 33804176 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPAS4 11 66421004 66426707 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPAT 11 108157215 108222642 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPB 17 81900745 81902905 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 2 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPBWR1 8 52938431 52941117 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPBWR2 20 64105820 64107171 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPC1 18 23506184 23586898 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 45 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPC1L1 7 44512535 44541315 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPC2 14 74476192 74494177 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPDC1 9 137039470 137046203 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPEPL1 20 58689131 58719238 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 13 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPEPPS 17 47522942 47623276 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 24 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPFF 12 53506690 53507638 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPFFR1 10 70247329 70283676 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPFFR2 4 72031804 72148067 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPHP1 2 110122311 110205066 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPHP3 3 132680609 132722442 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPHP3-ACAD11 3 132558142 132722459 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 69 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPHP4 1 5862811 5992473 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 31 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPHS1 19 35825964 35869287 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 45 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPHS2 1 179550539 179575952 FALSE 74 -0.589588184480294 28 179302743 179846780 NA 2 NA NA 2 NA 544037 NA 6 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPA1 16 14922802 14952060 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPA5 16 15363624 15381047 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPA8 16 18317942 18336736 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB11 16 29381354 29404029 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB12 16 29483642 29505999 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB15 16 74377878 74392080 FALSE 1117 -0.616228908704223 28 73127392 74391401 NA 2 NA NA 2 NA 1264009 NA 3 7 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB2 16 11927373 11976643 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB4 16 21834569 21880827 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB6 16 28342555 28363508 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB7 16 28456372 28471175 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB8 16 28637654 28658682 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPIPB9 16 28751787 28772807 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPL 1 182789293 182830384 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPLOC4 17 81556887 81648465 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 25 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPM1 5 171387116 171411137 TRUE 415 1.98034689653435 113 171309378 171416856 0.593481580287395 17 NA 0.593481580287395 17 NA 107478 NA 2 32 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPM2 8 22024125 22036897 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPM3 10 101781325 101783413 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPNT 4 105894775 106004027 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPPA 1 11845709 11848345 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPPB 1 11857464 11858931 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPPC 2 231921820 231926403 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPR1 1 153678637 153693992 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 24 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPR2 9 35792154 35809732 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 26 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPR3 5 32689070 32791724 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPRL2 3 50347330 50351091 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPRL3 16 84271 138860 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPS 10 127549369 127552639 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPSR1 7 34658239 34878332 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPTN 15 73560014 73634134 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPTX1 17 80467148 80477843 FALSE 1236 -0.54950921675465 31 80393401 80476366 NA 2 NA NA 2 NA 82965 NA 3 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPTX2 7 98617297 98629868 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPTXR 22 38818452 38843982 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPVF 7 25224570 25228486 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPW 16 2009926 2020755 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPY 7 24284163 24291865 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPY1R 4 163323961 163344832 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPY2R 4 155208629 155217078 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPY4R2 10 47918739 47923524 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NPY5R 4 163343939 163351934 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NQO1 16 69706996 69726951 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NQO2 6 2987987 3028869 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 6 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR0B1 23 30304206 30309598 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR0B2 1 26911489 26913966 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR1D1 17 40092787 40100725 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR1D2 3 23945260 23980618 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR1H2 19 50329653 50382982 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 21 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR1H3 11 47248300 47269032 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR1H4 12 100473708 100564413 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR1I2 3 119780484 119818485 FALSE 277 -0.549951694983867 31 119616037 119817077 NA 2 NA NA 2 NA 201040 NA 6 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR1I3 1 161229666 161238302 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2C1 12 95020229 95073703 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2C2 3 14947584 15053600 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2C2AP 19 19201416 19203424 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2E1 6 108166058 108188809 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2E3 15 71792638 71818259 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2F1 5 93583224 93594615 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2F2 15 96325938 96340263 FALSE 1059 -0.999534667247782 11 93072984 98485893 0.593443012170704 1 0 0.593443012170704 1 0 5412909 1 6 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR2F6 19 17231883 17245940 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR3C1 5 143277931 143435512 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR3C2 4 148078762 148444698 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR4A1 12 52022832 52059507 FALSE 878 -0.322741691668877 42 52007079 52552961 0.550845998803593 3 0 0.550845998803593 3 0 545882 3 18 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR4A2 2 156324432 156342348 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR4A3 9 99821855 99866891 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR5A1 9 124481236 124507430 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR5A2 1 200027602 200177424 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NR6A1 9 124517275 124771310 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRAP 10 113588716 113664127 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 45 12 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRARP 9 137300482 137302251 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRAS 1 114704469 114716894 FALSE 39 2.48087286043573 123 114704494 114716721 0.593481580287395 25 NA 0.593481580287395 25 NA 12227 NA 1 20 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRBF2 10 63133247 63155031 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRBP1 2 27427790 27442259 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRBP2 8 143833594 143840974 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRCAM 7 108147623 108456717 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 32 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRDC 1 51789191 51878937 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 35 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRDE2 14 90267856 90332137 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NREP 5 111662621 111997464 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRF1 7 129611714 129757082 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRG1 8 31639386 32767959 FALSE 594 -0.219485795153378 47 31167035 32649340 0.593443012170704 3 1 0.593443012170704 3 1 1482305 2 2 548 93 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRG2 5 139846779 140043299 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRG3 10 81875314 82987179 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRG4 15 75935969 76059795 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRGN 11 124739846 124747210 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRIP1 21 14961235 15065936 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRIP2 12 2825348 2835544 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRIP3 11 8980576 9004049 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRK 23 105822543 105958610 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 35 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRL 14 24080107 24115014 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRM 6 30688047 30691420 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRN1 6 5997999 6007605 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRN1L 16 67884805 67888855 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRP1 10 33177492 33336262 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRP2 2 205681990 205798133 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRROS 3 196639686 196662004 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRSN1 6 24126122 24154900 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRSN2 20 346782 359660 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRTN 19 5823802 5828324 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRXN1 2 49918505 51225575 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 36 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRXN2 11 64606174 64723188 FALSE 788 -0.567376751383287 31 64559137 64803166 NA 2 NA NA 2 NA 244029 NA 7 36 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NRXN3 14 78170373 79868290 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 32 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSA2 5 74766991 74780113 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSD1 5 177133025 177300215 TRUE 417 0.692426231476212 77 177081958 177292535 0.593481580287395 6 NA 0.593481580287395 6 NA 210577 NA 2 71 3 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSD2 4 1871424 1982207 FALSE 324 -0.890136228440778 13 1808795 1893896 0.522719719214577 1 0 0.522719719214577 1 0 85101 1 3 77 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSD3 8 38269697 38382272 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 62 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSDHL 23 152830967 152869729 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSF 17 46590669 46757464 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSFL1C 20 1442162 1473842 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSG1 4 4348140 4419058 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSG2 5 174045604 174243501 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSL1 1 212726153 212791782 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSMAF 8 58583504 58659844 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 31 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSMCE1 16 27224991 27268794 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSMCE2 8 125091679 125367120 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSMCE3 15 29264992 29269829 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSMCE4A 10 121957088 121975217 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSMF 9 137447573 137459334 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSRP1 17 30115521 30186475 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSUN2 5 6599239 6633291 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSUN3 3 94062916 94128545 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSUN4 1 46340177 46365152 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSUN5 7 73302517 73308867 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSUN6 10 18545561 18659285 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NSUN7 4 40749897 40809985 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5C 17 75130225 75131795 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5C1A 1 39659121 39672038 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5C1B 2 18562872 18589572 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5C1B-RDH14 2 18555545 18589564 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5C2 10 103088017 103193306 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 21 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5C3A 7 33014113 33062797 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5C3B 17 41825181 41836263 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5DC1 6 116100849 116249497 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5DC2 3 52524385 52535054 FALSE 260 -0.548533387558164 31 52412304 52540384 NA 2 NA NA 2 NA 128080 NA 7 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5DC3 12 103770453 103841197 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 14 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5DC4 2 112721486 112742879 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5E 6 85449584 85495791 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 11 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NT5M 17 17303335 17347663 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTAN1 16 15037853 15056079 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTF3 12 5432112 5521536 FALSE 834 0.228253228305157 64 4810260 5563608 0.593443012170704 4 NA 0.593443012170704 4 NA 753348 NA 6 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTF4 19 49061066 49065054 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTHL1 16 2039815 2047866 TRUE 1069 1.12298647206621 84 2034914 2090132 0.593481580287395 9 NA 0.593481580287395 9 NA 55218 NA 4 12 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTM 11 131370478 132336822 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 13 0 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTMT1 9 129608884 129636131 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTN1 17 9021542 9244000 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTN3 16 2471499 2474145 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTN4 12 95657807 95791152 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTN5 19 48661407 48673081 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTNG1 1 107140007 107483458 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTNG2 9 132161676 132244534 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 12 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTPCR 1 232950605 232983882 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTRK1 1 156815640 156881850 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 84 6 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTRK2 9 84668551 85027070 FALSE 673 -0.811842980706275 15 84002240 84725880 0.449390955025597 1 0 0.449390955025597 1 0 723640 1 3 388 34 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTRK3 15 87859751 88256768 FALSE 1044 0.37129225020299 68 87859777 87945166 0.389403197422789 6 NA 0.389403197422789 6 NA 85389 NA 1 826 67 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTS 12 85874295 85882992 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTSR1 20 62708837 62762771 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NTSR2 2 11658178 11670164 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUAK1 12 106063340 106140033 FALSE 909 2.59835530860529 125 106063615 106138896 0.593481580287395 27 NA 0.593481580287395 27 NA 75281 NA 1 26 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUAK2 1 205302059 205321791 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUB1 7 151341699 151378449 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUBP1 16 10743786 10769351 FALSE 1085 -0.84470762604648 15 10431390 10818508 0.449390955025597 1 0 0.449390955025597 1 0 387118 1 5 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUBP2 16 1782901 1789191 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUBPL 14 31489956 31861224 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUCB1 19 48900050 48923372 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 12 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUCB2 11 17208153 17349980 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUCKS1 1 205712819 205750276 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDC 1 26900238 26946862 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDCD1 8 109240919 109334385 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDCD2 5 163446526 163460140 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDCD3 7 44379121 44490880 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT1 7 2242222 2251146 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT10 23 51332231 51337525 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT11 23 51490011 51496596 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT12 5 103548855 103562793 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT13 10 73110375 73131828 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT14 14 105172938 105181323 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT15 13 48037567 48047222 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT16 3 131381671 131388830 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT16L1 16 4693694 4695859 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT17 1 145845629 145848953 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT18 8 22106872 22109419 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT19 19 32691961 32713796 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT2 9 34329506 34343713 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT21 16 56429133 56452199 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT22 11 64225941 64230686 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT3 6 34279679 34392674 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT4 12 93377883 93408146 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT5 10 12165325 12196144 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT6 4 122888697 122922968 FALSE 353 1.86275900482518 109 122742269 122898253 0.593481580287395 15 NA 0.593481580287395 15 NA 155984 NA 3 26 10 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT7 16 77722492 77742260 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT8 11 67627938 67629930 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUDT9 4 87422582 87459454 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUF2 1 163266576 163355764 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUFIP1 13 44939249 44989483 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUFIP2 17 29255836 29294118 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUGGC 8 28021964 28083871 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 18 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUMA1 11 72002864 72080693 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 39 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUMB 14 73275107 73458617 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUMBL 19 40665905 40690972 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP107 12 68686734 68745809 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 28 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP133 1 229440260 229508341 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP153 6 17615035 17706834 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP155 5 37288137 37371181 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 35 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP160 11 47778087 47848555 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 38 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP188 9 128947699 129007096 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 45 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP205 7 135557919 135648757 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 43 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP210 3 13316235 13420309 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 43 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP210L 1 153992685 154155116 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 40 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP214 9 131125561 131234670 FALSE 699 0.987898494995058 82 131125777 131233457 0.593481580287395 8 NA 0.593481580287395 8 NA 107680 NA 1 45 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP35 2 183117513 183161680 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP37 12 102073103 102120124 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP43 6 149724315 149749665 FALSE 501 1.44143235457538 95 149658107 149727219 0.593481580287395 11 NA 0.593481580287395 11 NA 69112 NA 2 9 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP50 22 45163841 45188015 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP54 4 76114659 76148515 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP58 13 25301524 25349800 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP62 19 49906825 49929763 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP62CL 23 107123427 107206433 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP85 17 75205659 75235758 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 19 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP88 17 5360963 5420160 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP93 16 56730105 56850286 FALSE 1106 2.21665138801633 120 56684041 56850307 0.593481580287395 20 NA 0.593481580287395 20 NA 166266 NA 2 46 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUP98 11 3671083 3797792 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 36 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUPL2 7 23181827 23201011 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUPR1 16 28532708 28539174 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUPR2 7 56114681 56116400 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUS1 6 117675502 117710640 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUSAP1 15 41332694 41381050 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTF2 16 67846732 67872567 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTM1 15 34343315 34357737 FALSE 1006 2.30379328437551 121 34342117 34357743 0.593481580287395 22 NA 0.593481580287395 22 NA 15626 NA 2 35 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTM2A 10 87225448 87236908 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 6 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTM2B 10 79703227 79714681 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTM2D 10 87357668 87370695 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 7 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTM2E 10 79841358 79850878 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTM2F 9 94318196 94328644 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NUTM2G 9 96928310 96940253 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NVL 1 224227334 224330387 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NWD1 19 16719976 16817963 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NWD2 4 37244220 37449465 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXF1 11 62792123 62806302 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXF3 23 103075810 103093125 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXF5 23 101832112 101857577 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 12 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXN 17 799313 979770 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXNL1 19 17455425 17460954 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXNL2 9 88534033 88584274 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPE1 11 114521645 114559895 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPE2 11 114678386 114706933 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPE3 3 101779202 101827392 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPE4 11 114570591 114595762 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPH1 7 8433955 8752963 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPH2 2 138670772 138780348 FALSE 175 -0.921750094504028 13 137170791 138780250 0.522719719214577 1 0 0.522719719214577 1 0 1609459 1 4 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPH3 17 49575858 49583827 FALSE 1199 0.637650451544936 75 49502223 49646629 0.593481580287395 6 NA 0.593481580287395 6 NA 144406 NA 3 4 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXPH4 12 57216795 57226449 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXT1 20 23350736 23354777 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NXT2 23 109535781 109544690 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NYAP1 7 100483927 100494799 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NYAP2 2 225399710 225654018 FALSE 222 -0.757316038902357 18 224765833 225651508 0.387809979850725 1 0 0.387809979850725 1 0 885675 1 2 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NYNRIN 14 24398786 24419288 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 26 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 NYX 23 41447434 41475710 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAF 11 120210767 120230332 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OARD1 6 41033627 41097787 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAS1 12 112906777 112933222 FALSE 916 -0.520240205853977 34 112828330 113010457 NA 2 NA NA 2 NA 182127 NA 4 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAS2 12 112978395 113011723 FALSE 916 -0.520240205853977 34 112828330 113010457 NA 2 NA NA 2 NA 182127 NA 4 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAS3 12 112938352 112973249 FALSE 916 -0.520240205853977 34 112828330 113010457 NA 2 NA NA 2 NA 182127 NA 4 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OASL 12 121019111 121039242 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAT 10 124397303 124418976 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAZ1 19 2269509 2273490 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAZ2 15 64687573 64703281 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OAZ3 1 151762899 151771334 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OBP2A 9 135546139 135549969 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OBP2B 9 133205277 133209250 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OBSCN 1 228208130 228378874 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 192 31 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OBSL1 2 219550729 219571859 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 40 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OC90 8 132024220 132059380 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 15 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCA2 15 27754875 28099358 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCEL1 19 17226204 17229219 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCIAD1 4 48805212 48861817 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCIAD2 4 48885019 48906937 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCLM 1 186400572 186401455 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCLN 5 69492292 69558104 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCM 7 5879827 5886362 FALSE 519 -0.179912547532896 52 5563734 6005889 0.426118104232275 3 NA 0.426118104232275 3 NA 442155 NA 7 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCM2 7 97984684 97991169 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCRL 23 129539849 129592561 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OCSTAMP 20 46540946 46550574 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODAM 4 70196496 70204576 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODAPH 4 75556048 75565885 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODC1 2 10439968 10448504 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF1 8 102551572 102561017 FALSE 631 1.66601826093658 102 102252345 102652000 0.593481580287395 13 NA 0.593481580287395 13 NA 399655 NA 3 4 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF2 9 128455186 128501292 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF2L 1 86346824 86396342 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 19 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF3 11 196738 200261 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF3B 22 50529710 50532580 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF3L1 15 75723977 75727688 FALSE 1040 -0.419253708499368 37 75468964 75843853 NA 2 NA NA 2 NA 374889 NA 7 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF3L2 19 463346 474983 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODF4 17 8339864 8346048 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ODR4 1 186375838 186421378 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OFD1 23 13734745 13769353 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGA 10 101784443 101818465 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGDH 7 44606572 44709066 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGDHL 10 49734643 49762379 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGFOD1 16 56451490 56479100 FALSE 1105 -0.351971348495073 44 56334777 56683199 0.18904974046126 3 NA 0.18904974046126 3 NA 348422 NA 16 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGFOD2 12 122974580 122980043 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGFOD3 17 82389223 82418637 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 11 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGFR 20 62804835 62814000 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 12 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGFRL1 6 71288803 71308950 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGG1 3 9749944 9788219 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGN 9 92383967 92404696 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OGT 23 71533083 71575897 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OIP5 15 41309268 41332621 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OIT3 10 72893581 72933033 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLA1 2 174072447 174248698 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLAH 10 15032227 15073852 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFM1 9 135075422 135121179 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFM2 19 9853718 9936552 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFM3 1 101802574 101997030 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFM4 13 53028759 53052057 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFML1 11 7485388 7511377 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFML2A 9 124777158 124814885 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFML2B 1 161983192 162023854 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLFML3 1 113979391 114035572 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLIG1 21 33070144 33072420 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLIG2 21 33025845 33029196 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLIG3 6 137492202 137494250 FALSE 497 1.29742908483319 90 137194867 138092196 0.593481580287395 10 NA 0.593481580287395 10 NA 897329 NA 4 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OLR1 12 10158301 10172138 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OMA1 1 58415384 58546802 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 10 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OMD 9 92414245 92424461 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OMG 17 31272013 31297539 FALSE 1162 1.15409771633477 85 31090043 31387166 0.593481580287395 9 NA 0.593481580287395 9 NA 297123 NA 5 7 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OMP 11 77102840 77103331 FALSE 803 -0.341739698901511 44 76796634 77285099 0.18904974046126 3 NA 0.18904974046126 3 NA 488465 NA 7 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ONECUT1 15 52756989 52791078 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ONECUT2 18 57435685 57491297 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ONECUT3 19 1752373 1780988 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OOEP 6 73368555 73395133 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OOSP2 11 60040275 60048044 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPA1 3 193593144 193697823 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 31 7 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPA3 19 45527427 45602212 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPALIN 10 96343216 96359365 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPCML 11 132414977 133532519 FALSE 824 -1.18865139333812 5 132212194 133844627 0.40635440857188 0 0 0.40635440857188 0 0 1632433 0 3 10 1 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPHN1 23 68042344 68433913 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 24 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPLAH 8 144051266 144063965 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 27 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPN1LW 23 154144224 154159032 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPN1MW 23 154182596 154196135 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 2 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPN1SW 7 128772491 128775790 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPN3 1 241590102 241677376 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPN4 10 86654557 86666848 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPN5 6 47781982 47832780 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPRD1 1 28812142 28871267 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPRK1 8 53225716 53251697 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPRL1 20 64080173 64100643 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPRM1 6 154010496 154246867 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPRPN 4 70397882 70410194 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPTC 1 203494143 203508864 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OPTN 10 13099449 13138308 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10A2 11 6863057 6874717 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10A3 11 7937171 7941708 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10A4 11 6876625 6877619 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10A5 11 6845652 6846705 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10A6 11 7924592 7931268 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10A7 12 55221025 55221975 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10AD1 12 48202083 48203387 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10AG1 11 55965755 55969945 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10C1 6 29439306 29440977 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10D3 11 124183345 124188780 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10G2 14 21633836 21634940 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10G3 14 21568520 21580076 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10G4 11 124012997 124018732 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10G6 11 123994163 123995161 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10G7 11 124036013 124041325 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10G8 11 124026798 124030634 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10G9 11 124023013 124023948 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10H1 19 15804549 15815664 FALSE 1312 -0.0762223533681475 54 15643932 15807992 0.569455701337318 3 NA 0.569455701337318 3 NA 164060 NA 6 4 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10H2 19 15728020 15729060 FALSE 1312 -0.0762223533681475 54 15643932 15807992 0.569455701337318 3 NA 0.569455701337318 3 NA 164060 NA 6 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10H3 19 15737985 15742343 FALSE 1312 -0.0762223533681475 54 15643932 15807992 0.569455701337318 3 NA 0.569455701337318 3 NA 164060 NA 6 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10H4 19 15944299 15950350 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10H5 19 15787661 15801025 FALSE 1312 -0.0762223533681475 54 15643932 15807992 0.569455701337318 3 NA 0.569455701337318 3 NA 164060 NA 6 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10J1 1 159437845 159443078 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10J5 1 159535078 159536007 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10K1 1 158461574 158470857 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10K2 1 158418210 158426237 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10P1 12 55636860 55637854 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10Q1 11 58227882 58228918 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10R2 1 158472220 158480936 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10S1 11 123976661 123977781 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10T2 1 158398522 158399466 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10V1 11 59712916 59713845 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10W1 11 58266792 58268260 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10X1 1 158578919 158579899 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR10Z1 1 158605268 158612514 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11A1 6 29425504 29457071 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11G2 14 20190894 20201075 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11H1 22 15528159 15529139 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11H12 14 18601045 18602129 FALSE 962 -0.552828340147654 29 18601367 19748358 1 2 1 1 2 1 1146991 1 6 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11H2 14 19712904 19714332 FALSE 962 -0.552828340147654 29 18601367 19748358 1 2 1 1 2 1 1146991 1 6 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11H4 14 20239286 20244349 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11H6 14 20223710 20224702 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR11L1 1 247840928 247841896 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 3 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR12D2 6 29395631 29398008 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR12D3 6 29373423 29375291 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13A1 10 45302298 45315608 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13C2 9 104604671 104605627 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13C3 9 104535749 104536856 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13C4 9 104526253 104527209 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13C5 9 104598457 104599413 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 4 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13C8 9 104569168 104570130 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13C9 9 104617248 104618204 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13D1 9 104694379 104695485 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13F1 9 104504263 104505222 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13G1 1 247670812 247679739 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13H1 23 131543976 131545056 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR13J1 9 35869263 35870601 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR14A16 1 247814660 247824119 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR14A2 1 247722957 247724043 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR14C36 1 248348775 248349713 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR14I1 1 248681369 248682304 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 3 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR14J1 6 29301701 29313017 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR14K1 1 247738615 247739559 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1A1 17 3207539 3218896 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1A2 17 3197519 3198448 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1B1 9 122628579 122629573 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1C1 1 247754846 247760556 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1D2 17 3088484 3104422 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1D5 17 3062669 3063607 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 4 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1E1 17 3397104 3398410 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1E2 17 3432870 3433841 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1F1 16 3204247 3205188 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1G1 17 3126584 3127581 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1I1 19 15082211 15092970 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1J1 9 122476958 122477926 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1J2 9 122510802 122511743 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1J4 9 122519141 122520082 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1K1 9 122800123 122801073 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1L1 9 122661566 122662648 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1L3 9 122675036 122676153 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1L4 9 122723990 122724925 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1L6 9 122742303 122750783 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1L8 9 122567117 122583384 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1M1 19 9087061 9095669 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1N1 9 122526358 122527296 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1N2 9 122553112 122554214 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1Q1 9 122614738 122615682 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1S1 11 58212720 58216084 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR1S2 11 58203202 58204181 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A1 7 144312464 144322668 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A12 7 144086278 144098953 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A14 7 144123176 144131188 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A2 7 144109514 144110564 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A25 7 144069811 144075870 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A4 6 131699644 131701401 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A42 7 144228244 144239605 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A5 7 144048948 144058845 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2A7 7 144257663 144264792 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2AE1 7 99875987 99877057 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2AG1 11 6783020 6791558 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2AG2 11 6765626 6771976 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2AJ1 1 247924889 247935339 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2AK2 1 247965233 247966386 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2AP1 12 55572468 55575612 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2AT4 11 75081753 75096876 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2B11 1 247449118 247458105 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2B2 6 27911185 27912396 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 5 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2B3 6 29086208 29087313 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2B6 6 27957241 27958182 FALSE 434 -0.153814967172165 52 27807576 27957863 0.426118104232275 3 NA 0.426118104232275 3 NA 150287 NA 18 4 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2C1 16 3355889 3357294 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2C3 1 247524677 247536440 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2D2 11 6891490 6892599 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2D3 11 6920974 6922043 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2F1 7 143954844 143997312 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2F2 7 143935166 143936279 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2G2 1 247588360 247589313 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2G3 1 247605586 247606515 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2G6 1 248508073 248527337 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2H1 6 29457181 29464328 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2H2 6 29585121 29590500 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2I1P 6 29550407 29557721 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 2 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2J1 6 29099657 29102701 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2J2 6 29170907 29175811 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2J3 6 29108059 29114770 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2K2 9 111327483 111330183 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2L13 1 248095184 248101103 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2L2 1 248030070 248042305 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2L3 1 248046836 248063407 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2L5 1 248013660 248024276 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2L8 1 247948858 247949796 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2M2 1 248174821 248181067 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2M3 1 248197265 248212925 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2M4 1 248231417 248244679 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2M5 1 248145148 248146086 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2M7 1 248323630 248324568 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2S2 9 35957108 35958154 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T1 1 248403048 248408020 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T12 1 248290139 248303424 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T2 1 248445512 248455725 FALSE 106 0.243660117775687 64 248441164 248489049 0.593443012170704 4 NA 0.593443012170704 4 NA 47885 NA 3 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T27 1 248649838 248655528 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T29 1 248556912 248562772 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 1 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T3 1 248473351 248474307 FALSE 106 0.243660117775687 64 248441164 248489049 0.593443012170704 4 NA 0.593443012170704 4 NA 47885 NA 3 4 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T33 1 248269917 248277976 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T34 1 248573801 248574757 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T35 1 248636356 248645278 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 1 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T4 1 248361581 248362627 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T5 1 248488589 248491113 FALSE 106 0.243660117775687 64 248441164 248489049 0.593443012170704 4 NA 0.593443012170704 4 NA 47885 NA 3 2 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T6 1 248375746 248391811 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2T8 1 247920252 247921956 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2V1 5 181123122 181131169 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2V2 5 181147586 181159285 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2W1 6 29044213 29045240 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2W3 1 247895587 247896531 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2Y1 5 180739042 180740099 FALSE 422 0.877213898162749 80 180601633 180739499 0.593481580287395 7 NA 0.593481580287395 7 NA 137866 NA 2 4 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR2Z1 19 8721634 8732160 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR3A1 17 3291017 3298360 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR3A2 17 3276942 3386317 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR3A3 17 3411370 3424070 FALSE 1138 0.0105993817013613 58 3063013 3433799 0.387728048050399 4 NA 0.387728048050399 4 NA 370786 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4A15 11 55367884 55368918 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4A16 11 55343151 55344231 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4A47 11 48488717 48489780 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4A5 11 54706832 54707902 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4B1 11 48216810 48217739 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C11 11 55602360 55607645 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C12 11 49981473 49982535 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C13 11 49952391 49953419 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C15 11 55554307 55555419 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C16 11 55572128 55573060 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C3 11 48324920 48328471 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C46 11 54603069 54603998 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C5 11 48365485 48366465 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4C6 11 55662201 55666195 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4D1 17 58148449 58159555 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4D10 11 59473315 59479361 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4D11 11 59503576 59504511 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4D2 17 58166982 58171411 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4D5 11 123939543 123940637 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4D6 11 59456938 59457991 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4D9 11 59511368 59520703 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4E1 14 21667940 21673818 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4E2 14 21653835 21667642 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4F15 15 101812202 101820197 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4F17 19 107104 117102 FALSE 1268 -0.550469679268302 31 110858 440853 NA 2 NA NA 2 NA 329995 NA 6 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4F21 8 166049 167043 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4F4 15 101922042 101923113 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4F6 15 101803509 101806887 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4K1 14 19930917 19936757 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4K13 14 20029399 20036038 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4K14 14 20014143 20019307 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4K15 14 19975444 19976659 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4K17 14 20110739 20122199 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4K2 14 19875142 19883932 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4K5 14 19920582 19921659 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4L1 14 20060045 20060983 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4M1 14 19773504 19783696 FALSE 963 1.36028682588823 91 19780512 19868402 0.593481580287395 11 NA 0.593481580287395 11 NA 87890 NA 2 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4N2 14 19719015 19830253 FALSE 962 -0.552828340147654 29 18601367 19748358 1 2 1 1 2 1 1146991 1 6 12 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4N4 15 22094522 22095472 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4N5 14 20138820 20145471 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4P4 11 55635113 55640309 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4Q3 14 19743571 19749469 FALSE 962 -0.552828340147654 29 18601367 19748358 1 2 1 1 2 1 1146991 1 6 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4S1 11 48306223 48307152 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4S2 11 55648327 55652854 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4X1 11 48263861 48264778 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR4X2 11 48245056 48246080 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51A2 11 4954772 4955713 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51A4 11 4942831 4947605 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51A7 11 4903783 4909462 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51B2 11 5323359 5324297 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51B4 11 5301014 5301946 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51B5 11 5303444 5505652 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 37 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51B6 11 5351508 5352446 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51D1 11 4637477 4643060 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51E1 11 4643420 4655488 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51E2 11 4680171 4697854 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51F1 11 4768979 4769938 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51F2 11 4821321 4822456 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51G1 11 4923374 4924339 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51G2 11 4912588 4919350 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51I1 11 5440570 5441514 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51I2 11 5449323 5456518 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51L1 11 4994851 5005536 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51M1 11 5383812 5393263 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51Q1 11 5422111 5423206 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51S1 11 4847489 4849238 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51T1 11 4881819 4882883 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR51V1 11 5199735 5200700 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52A1 11 5143219 5154757 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52A5 11 5128776 5138356 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52B2 11 6169330 6170408 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52B4 11 4367263 4368386 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52B6 11 5580877 5581884 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52D1 11 5488685 5489749 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52E2 11 5058650 5059627 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52E4 11 5880629 5887079 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52E5 11 5893208 5902730 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52E6 11 5840928 5841952 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52E8 11 5856674 5857734 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52H1 11 5544489 5548533 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52I1 11 4593614 4596574 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52I2 11 4581743 4593340 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52J3 11 5046526 5047461 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52K1 11 4482646 4493497 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52K2 11 4449295 4450361 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52L1 11 5985892 5986985 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52M1 11 4545191 4546144 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52N1 11 5786471 5791265 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52N2 11 5820314 5821348 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52N4 11 5754243 5755905 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52N5 11 5776165 5783355 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52R1 11 4803433 4804380 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR52W1 11 6199146 6200259 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR56A1 11 6019336 6034338 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR56A3 11 5938751 5951347 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR56A4 11 5999445 6006946 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR56A5 11 5967177 5968494 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR56B1 11 5736448 5738522 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR56B4 11 6107684 6108835 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5A1 11 59436469 59451380 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5A2 11 59416969 59426412 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5AC2 3 98087173 98088102 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5AK2 11 56988872 56989867 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5AN1 11 59358895 59371714 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5AP2 11 56641466 56642471 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5AR1 11 56663662 56664687 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5AS1 11 56027654 56038191 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5AU1 14 21148370 21159060 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5B12 11 58439077 58442758 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5B17 11 58358124 58359069 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5B2 11 58421264 58428121 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5B21 11 58507175 58508105 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5B3 11 58402464 58406874 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5C1 9 122788933 122789895 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5D13 11 55773438 55774382 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5D14 11 55795556 55796500 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5D16 11 55838752 55839738 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5D18 11 55819607 55820597 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5F1 11 55993681 55994625 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5H1 3 98130721 98138548 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5H14 3 98147479 98156614 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5H15 3 98166696 98169774 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5H2 3 98282888 98283832 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5H6 3 98263252 98265356 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5I1 11 55935456 55936400 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 3 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5J2 11 56176618 56177556 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5K1 3 98463201 98472924 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5K2 3 98497604 98498663 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5K3 3 98390666 98391631 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5K4 3 98353854 98354819 FALSE 275 0.179939540208906 63 98087424 98498453 0.54220702508464 4 NA 0.54220702508464 4 NA 411029 NA 11 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5L1 11 55811367 55812476 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5L2 11 55827219 55828154 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5M1 11 56609236 56614874 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5M10 11 56576736 56577787 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5M11 11 56542262 56543281 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5M3 11 56469274 56473352 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5M8 11 56490349 56491395 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5M9 11 56462469 56463401 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5P2 11 7795905 7796973 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5P3 11 7824818 7830840 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5R1 11 56417258 56418232 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5T1 11 56274154 56276819 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5T2 11 56231282 56234255 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5T3 11 56252200 56253222 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5V1 6 29353749 29431967 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 21 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR5W2 11 55913650 55914582 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6A2 11 6791736 6799689 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6B1 7 144000320 144008793 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6B2 2 240028965 240030456 FALSE 230 -0.660015943821219 25 239225010 240046012 0.276933305076759 1 0 0.276933305076759 1 0 821002 1 4 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6B3 2 240045077 240047027 FALSE 230 -0.660015943821219 25 239225010 240046012 0.276933305076759 1 0 0.276933305076759 1 0 821002 1 4 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C1 12 55314343 55322364 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C2 12 55444069 55453347 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C3 12 55330043 55332687 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C4 12 55549602 55555832 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C6 12 55293988 55296569 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C65 12 55400430 55401505 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C68 12 55492378 55493316 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C70 12 55469200 55470138 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C74 12 55247198 55248302 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C75 12 55362975 55369279 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6C76 12 55426254 55427192 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6F1 1 247711436 247716646 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6J1 14 22630929 22644352 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 5 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6K2 1 158699678 158700652 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6K3 1 158716327 158720720 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6K6 1 158754720 158755891 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6M1 11 123805335 123806387 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6N1 1 158747814 158772195 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6N2 1 158774222 158781204 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6P1 1 158560606 158570580 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6Q1 11 58030930 58031931 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6S1 14 20640696 20641691 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6T1 11 123942785 123943873 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6V1 7 143052320 143053347 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6X1 11 123753488 123754545 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR6Y1 1 158544550 158554405 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7A10 19 14840466 14848922 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7A17 19 14878203 14886132 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7A5 19 14824251 14835285 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7C1 19 14789260 14835376 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7C2 19 14941489 14942448 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7D2 19 9178979 9188817 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7D4 19 9210276 9219589 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7E24 19 9247344 9252625 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7G1 19 9114828 9115763 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7G2 19 9100407 9107475 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR7G3 19 9126012 9126950 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8A1 11 124566660 124582942 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8B12 11 124539635 124545333 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8B2 11 124382394 124384462 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8B3 11 124395534 124399024 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8B4 11 124423904 124424893 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8B8 11 124437445 124445696 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8D1 11 124302831 124315099 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8D2 11 124319238 124320288 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8D4 11 123902167 123909229 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8G1 11 124241095 124254364 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8G5 11 124256376 124266218 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8H1 11 56288462 56292254 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8H2 11 56103687 56107658 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8H3 11 56122373 56123311 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8I2 11 56093277 56094286 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8J1 11 56354291 56361511 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8J3 11 56134721 56140201 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8K1 11 56345945 56347031 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8K3 11 56315144 56320639 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8K5 11 56159394 56160317 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8S1 12 48525632 48528103 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR8U1 11 56375624 56376553 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9A2 7 143026158 143027195 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9A4 7 141916399 141920625 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9G1 11 56699095 56703884 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9G4 11 56741223 56748697 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9I1 11 58116742 58125530 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9K2 12 55126406 55132750 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9Q1 11 58023881 58181616 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OR9Q2 11 58189070 58194053 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORAI1 12 121626550 121642677 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORAI2 7 102433106 102456821 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORAI3 16 30949066 30956461 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORC1 1 52372829 52404459 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORC2 2 200908973 200963680 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORC3 6 87590067 87667453 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORC4 2 147930397 148021604 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORC5 7 104126341 104208047 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 15 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORC6 16 46689643 46698394 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORM1 9 114323056 114326475 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORM2 9 114329869 114333252 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORMDL1 2 189770323 189784371 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORMDL2 12 55817919 55821879 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ORMDL3 17 39921041 39927601 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OS9 12 57693955 57721557 FALSE 892 -0.501289708551947 34 57694315 57747297 NA 2 NA NA 2 NA 52982 NA 3 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBP 11 59574398 59616144 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 16 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBP2 22 30693782 30907824 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL10 3 31657890 32077580 FALSE 243 1.13111558236862 84 31662127 31989687 0.593481580287395 9 NA 0.593481580287395 9 NA 327560 NA 2 20 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL11 3 125528858 125595090 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL1A 18 24162044 24397880 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL2 20 62231922 62296213 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL3 7 24796539 24981634 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL5 11 3087116 3166739 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 24 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL6 2 178194481 178402891 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL7 17 47807372 47821834 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 23 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL8 12 76351797 76559809 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 25 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSBPL9 1 51577179 51798427 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 37 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSCAR 19 54094668 54102692 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSCP1 1 36415827 36450451 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSER1 20 44196496 44210791 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSGEP 14 20446411 20455105 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 10 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSGEPL1 2 189746660 189763227 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSGIN1 16 83948282 83966332 FALSE 1122 -0.624455904823105 28 81999690 83998222 NA 2 NA NA 2 NA 1998532 NA 9 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSGIN2 8 89901849 89927888 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 12 0 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSM 22 30262829 30266840 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSMR 5 38845858 38945596 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 41 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSR1 2 19351485 19358653 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSR2 8 98944403 98952104 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OST4 2 27070472 27071773 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSTC 4 108650584 108667820 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSTF1 9 75088543 75147265 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSTM1 6 108041409 108165854 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OSTN 3 191199241 191265615 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTC 23 38352545 38421450 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOA 16 21663971 21761935 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOF 2 26457203 26558698 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 51 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOG 11 17547373 17647150 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 65 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOGL 12 80099537 80380879 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 60 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOL1 3 161496808 161503942 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOP1 4 4188803 4226889 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOP2 17 74924275 74933912 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOP3 17 74935719 74949992 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOR 20 16748358 16770062 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTOS 2 240139026 240144562 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTP 5 77628712 77639688 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUB1 11 63985853 64001811 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUB2 14 94026329 94048930 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD1 10 23439458 23442390 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD3 1 19882513 19912945 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD4 4 145110838 145180161 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD5 23 48922028 48958386 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD6A 23 70062491 70064179 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD6B 8 91070196 91087095 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD7A 15 31475398 31870789 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTUD7B 1 149937812 150010676 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTULIN 5 14664664 14699711 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTULINL 5 14581775 14615007 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTX1 2 63050057 63057836 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OTX2 14 56799905 56810479 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OVCA2 17 2041936 2043430 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OVCH1 12 29412474 29497686 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 30 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OVCH2 11 7689438 7706421 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 15 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OVGP1 1 111414314 111427777 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OVOL1 11 65787022 65797219 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OVOL2 20 17956979 18059188 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OVOL3 19 36111151 36113711 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXA1L 14 22766522 22773041 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXCT1 5 41730065 41870519 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXCT2 1 39769523 39771348 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXER1 2 42762481 42764261 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXGR1 13 96985719 96994730 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXLD1 17 81665036 81666635 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXNAD1 3 16265160 16350299 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXR1 8 106359476 106752694 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 23 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXSM 3 25782917 25794534 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXSR1 3 38165089 38255488 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXT 20 3071620 3072517 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 OXTR 3 8750408 8769628 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX1 17 3896592 3916500 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX2 12 132618776 132622386 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 11 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX3 11 57338374 57370600 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX4 12 121209857 121234106 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX5 17 3672199 3696404 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX5-TAX1BP3 17 3663063 3696194 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX6 22 21009808 21028830 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RX7 12 121132819 121188032 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY1 3 152834693 152841439 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY10 23 78945332 78961954 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY11 19 10111538 10115372 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY12 3 151337380 151384812 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY13 3 151326312 151329548 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY14 3 151212117 151278467 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY2 11 73218298 73236352 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY4 23 70258170 70259764 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P2RY6 11 73264505 73298617 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P3H1 1 42746335 42767084 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P3H2 3 189956728 190122437 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 17 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P3H3 12 6828410 6839851 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 15 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P3H4 17 41801947 41812604 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P4HA1 10 73007217 73096974 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P4HA2 5 132191838 132295315 FALSE 394 -0.271932115962752 46 131990195 132441120 0.261157737158964 3 NA 0.261157737158964 3 NA 450925 NA 9 23 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P4HA3 11 74235801 74311657 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 22 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P4HB 17 81843159 81860694 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 P4HTM 3 48989886 49007154 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PA2G4 12 56104319 56113907 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAAF1 11 73876699 73931124 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPC1 8 100685816 100722809 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPC1L 20 44910062 44959035 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPC1L2A 23 73077276 73079512 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPC3 13 25095868 25099254 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPC4 1 39560816 39576790 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPC4L 4 134196333 134201748 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPC5 23 91434595 91438584 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPN1 14 23321289 23326185 FALSE 969 2.63284172411721 125 23307037 23321834 0.593481580287395 27 NA 0.593481580287395 27 NA 14797 NA 3 8 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PABPN1L 16 88863333 88866660 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PACRG 6 162727132 163315492 FALSE 511 0.232361052265423 64 160752984 163562056 0.593443012170704 4 NA 0.593443012170704 4 NA 2809072 NA 6 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PACRGL 4 20696282 20752907 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PACS1 11 66070363 66244747 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 25 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PACS2 14 105300563 105398147 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 27 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PACSIN1 6 34466061 34535231 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PACSIN2 22 42835412 43015145 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PACSIN3 11 47177525 47186443 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PADI1 1 17205126 17246005 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PADI2 1 17066761 17119435 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PADI3 1 17249098 17284233 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PADI4 1 17308195 17364004 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PADI6 1 17372196 17401699 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAEP 9 135561756 135566955 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAF1 19 39385852 39391195 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAFAH1B1 17 2593210 2685615 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAFAH1B2 11 117144267 117176894 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAFAH1B3 19 42297033 42303546 FALSE 1342 -0.424583186963262 37 42297126 42410557 NA 2 NA NA 2 NA 113431 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAFAH2 1 25959767 25998157 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAG1 8 80967810 81112068 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAGE1 23 49687450 49695993 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAGE2 23 55089008 55092842 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAGE2B 23 55075063 55078909 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAGE3 23 55258412 55264846 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAGE4 23 49829260 49833973 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAGE5 23 55220355 55224108 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAGR1 16 29815952 29820117 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAH 12 102836885 102958410 FALSE 906 2.12023571644356 118 102197214 102840474 0.593481580287395 19 NA 0.593481580287395 19 NA 643260 NA 4 14 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAICS 4 56435741 56464579 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAIP1 5 43526267 43557758 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAIP2 5 139341587 139369720 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAIP2B 2 71182739 71227083 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAK1 11 77321707 77474635 FALSE 804 1.53301766490883 98 77322178 77590086 0.593481580287395 12 NA 0.593481580287395 12 NA 267908 NA 3 24 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAK1IP1 6 10694695 10709782 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAK2 3 196739857 196832647 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAK3 23 110944285 111227361 FALSE 1503 1.00424912178564 83 110944514 111220572 0.593481580287395 8 NA 0.593481580287395 8 NA 276058 NA 1 46 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAK4 19 39125770 39182816 FALSE 1333 1.99682025657099 113 39125853 39182412 0.593481580287395 17 NA 0.593481580287395 17 NA 56559 NA 1 27 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAK5 20 9537389 9839041 FALSE 1367 0.955791031289778 82 9532402 10049957 0.593481580287395 8 NA 0.593481580287395 8 NA 517555 NA 2 36 4 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAK6 15 40238759 40277487 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALB2 16 23603160 23641310 TRUE 1091 0.962347681164329 82 23603362 23641560 0.593481580287395 8 NA 0.593481580287395 8 NA 38198 NA 2 36 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALD1 10 70478821 70568449 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALLD 4 168497066 168928457 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 27 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALM 19 708939 748329 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 10 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALM2 9 109640788 109946703 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALM2-AKAP2 9 109780309 110172512 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALM3 19 14053365 14059159 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PALMD 1 99645943 99694541 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAM 5 102753981 103031105 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAM16 16 4331549 4355607 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAMR1 11 35431823 35530300 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAN2 12 56316223 56334053 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAN3 13 28138506 28295335 FALSE 939 -1.24478523144405 5 28138879 28292436 0.40635440857188 0 0 0.40635440857188 0 0 153557 0 1 20 0 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANK1 10 89579497 89645572 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANK2 20 3888839 3929882 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANK3 5 168548495 168579600 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANK4 1 2508533 2526628 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANO1 11 797511 799190 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANX1 11 94128928 94181972 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANX2 22 50170731 50180294 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 9 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PANX3 11 124611490 124620356 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAOX 10 133379234 133391694 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPLN 14 73237497 73274640 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 29 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPOLA 14 96501433 96567111 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPOLB 7 4857733 4861994 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPOLG 2 60756230 60802085 FALSE 140 -1.19628720155689 5 60553196 60797157 0.40635440857188 0 0 0.40635440857188 0 0 243961 0 2 22 1 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPPA 9 116153804 116402322 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 31 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPPA2 1 176463171 176845605 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 33 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPSS1 4 107590276 107720452 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAPSS2 10 87659613 87747705 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAQR3 4 78887127 78939438 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAQR4 16 2969245 2973489 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAQR5 15 69298947 69407780 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAQR6 1 156243321 156248117 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAQR7 1 25861210 25871253 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAQR8 6 52361421 52407777 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAQR9 3 142949164 142963682 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARD3 10 34109560 34815325 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARD3B 2 204545793 205620162 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 26 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARD6A 16 67660946 67662778 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARD6B 20 50731544 50756795 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARD6G 18 80157232 80247546 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARG 10 49818279 49970203 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARK7 1 7954291 7985505 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARL 3 183829271 183884933 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARM1 4 74933095 75050115 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARN 16 14435701 14632728 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP1 1 226360691 226408079 TRUE 94 0.176442903835246 63 226359360 226631718 0.54220702508464 4 NA 0.54220702508464 4 NA 272358 NA 3 37 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP10 8 143977153 144012772 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 24 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP11 12 3791047 3873448 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP12 7 140023744 140063721 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP14 3 122680618 122730840 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP15 3 122577602 122639047 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP16 15 65234460 65300618 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP2 14 20343582 20357905 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 16 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP3 3 51942345 51948867 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP4 13 24420926 24512810 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 37 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP6 15 72241181 72272999 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP8 5 50665899 50846522 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARP9 3 122527924 122564577 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARPBP 12 102120185 102197520 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 17 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARS2 1 54756898 54764514 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARVA 11 12377185 12535356 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARVB 22 43999211 44172949 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PARVG 22 44172956 44219533 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PASD1 23 151563622 151676739 FALSE 1522 -0.468653153264543 37 150592603 151672444 NA 2 NA NA 2 NA 1079841 NA 7 18 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PASK 2 241106099 241150264 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 24 7 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATE1 11 125746293 125749867 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 5 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATE2 11 125776113 125778819 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATE3 11 125788111 125791600 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATE4 11 125833316 125840069 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATJ 1 61742406 62178675 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 45 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATL1 11 59636716 59668980 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATL2 15 44665732 44711316 FALSE 1021 0.0694294466556344 60 44565872 44676520 0.593443012170704 3 NA 0.593443012170704 3 NA 110648 NA 2 17 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PATZ1 22 31325804 31346232 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAWR 12 79574979 79691097 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX1 20 21705659 21718486 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX2 10 100735603 100829941 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX3 2 222199888 222298996 FALSE 219 1.06005349802167 83 222199982 222424797 0.593481580287395 8 NA 0.593481580287395 8 NA 224815 NA 3 84 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX4 7 127610292 127618114 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 9 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX5 9 36833275 37034185 TRUE 666 2.77609584359151 128 36833353 36840619 0.593481580287395 30 NA 0.593481580287395 30 NA 7266 NA 1 52 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX6 11 31784779 31818062 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX7 1 18631006 18748866 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 30 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX8 2 113215997 113278950 FALSE 169 1.86593043637254 108 113216055 113278873 0.593481580287395 16 5 0.593481580287395 16 5 62818 11 1 95 27 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAX9 14 36657568 36679715 FALSE 973 2.4293379595694 123 36516618 36676439 0.593481580287395 24 NA 0.593481580287395 24 NA 159821 NA 3 8 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAXBP1 21 32733899 32771858 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAXIP1 7 154943687 155003084 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PAXX 9 136992418 136993984 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBDC1 23 76172936 76178204 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBK 8 27809620 27838095 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBLD 10 68282660 68333049 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBOV1 6 138215986 138218491 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBRM1 3 52545352 52685917 TRUE 261 0.82201388403216 79 52545410 52643317 0.593481580287395 7 NA 0.593481580287395 7 NA 97907 NA 2 54 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBX1 1 164555584 164899296 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBX2 6 32184741 32190186 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 11 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBX3 9 125747345 125967377 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBX4 19 19561707 19618916 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PBXIP1 1 154944076 154956123 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PC 11 66848233 66958376 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 32 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCARE 2 29060976 29074261 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCBD1 10 70882280 70888784 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCBD2 5 134904906 135007959 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCBP1 2 70087454 70089203 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCBP2 12 53452102 53481162 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCBP3 21 45643694 45942454 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCBP4 3 51957454 51974016 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCCA 13 100089015 100530437 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCCB 3 136250306 136337896 FALSE 287 -0.600619096773342 28 136023121 136329935 NA 2 NA NA 2 NA 306814 NA 3 21 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH1 5 141853111 141879246 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH10 4 133149315 133208606 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH11X 23 91779261 92623230 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH12 5 141943585 141969741 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 15 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH15 10 53802771 55627942 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 56 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH17 13 57631810 57729311 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH18 4 137518918 137532494 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH19 23 100291644 100410273 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH20 13 61409685 61415522 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH7 4 30720415 31146805 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH8 13 52842889 52848641 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDH9 13 66302834 67230445 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA1 5 140786136 141012347 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 155 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA10 5 140855883 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 64 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA11 5 140868183 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 54 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA12 5 140875302 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 44 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA13 5 140882208 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 35 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA2 5 140794852 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 145 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA3 5 140801028 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 135 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA4 5 140806929 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 124 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA5 5 140821604 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 114 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA6 5 140827958 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 104 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA7 5 140834248 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 94 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA8 5 140841187 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 85 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHA9 5 140847463 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 75 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHAC1 5 140926369 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 25 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHAC2 5 140966235 141012344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB1 5 141051135 141059344 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB10 5 141192353 141195642 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB11 5 141199582 141203779 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB12 5 141208697 141212571 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB13 5 141213919 141218979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB14 5 141222932 141227759 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB15 5 141245349 141249365 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB16 5 141181399 141186399 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB2 5 141094578 141098703 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB3 5 141100473 141103827 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB4 5 141121799 141125623 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB5 5 141135218 141138625 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB6 5 141150022 141153287 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB7 5 141172619 141176383 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB8 5 141177790 141180529 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHB9 5 141187127 141191541 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA1 5 141330571 141512981 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 222 6 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA10 5 141412987 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 74 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA11 5 141421047 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 54 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA12 5 141430589 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 44 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA2 5 141338760 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 212 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA3 5 141343829 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 202 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA4 5 141355025 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 182 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA5 5 141364232 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 162 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA6 5 141373914 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 143 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA7 5 141382739 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 133 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA8 5 141390157 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 115 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGA9 5 141402932 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 94 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGB1 5 141350102 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 192 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGB2 5 141360042 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 172 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGB3 5 141370264 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 153 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGB4 5 141387698 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 123 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGB5 5 141397987 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 104 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGB6 5 141408021 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 84 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGB7 5 141417645 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 64 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGC3 5 141475947 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 34 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGC4 5 141484997 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 24 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCDHGC5 5 141489121 141512979 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCED1A 20 2835314 2841190 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCED1B 12 47079603 47236662 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCF11 11 83156988 83187451 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 28 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCGF1 2 74505043 74508580 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCGF2 17 38733897 38749817 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCGF3 4 705748 770640 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCGF5 10 91163012 91284331 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCGF6 10 103302796 103351144 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCID2 13 113177539 113208715 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCIF1 20 45934628 45948023 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCK1 20 57561080 57568112 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 11 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCK2 14 24094053 24110598 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCLAF 15 64364311 64387687 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCLO 7 82754013 83162930 FALSE 539 -0.201108450825736 52 81959300 85121890 0.426118104232275 3 NA 0.426118104232275 3 NA 3162590 NA 5 76 8 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCM1 8 17922840 18029944 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 42 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCMT1 6 149749443 149811420 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCMTD1 8 51817575 51899186 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCMTD2 20 64255695 64287821 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCNA 20 5114953 5126626 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCNP 3 101574095 101594437 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCNT 21 46324122 46445769 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 63 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCNX1 14 70907405 71115382 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 43 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCNX2 1 232983435 233295713 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 45 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCNX3 11 65615773 65637439 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 42 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCNX4 14 60091911 60169133 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCOLCE 7 100602177 100608175 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCOLCE2 3 142815922 142889206 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCP2 19 7631611 7633748 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCP4 21 39867317 39929397 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCP4L1 1 161258727 161285450 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK1 5 96390415 96434143 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK1N 23 48831094 48835633 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK2 20 17226107 17484578 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK4 19 1481428 1490752 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 16 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK5 9 75890644 76362339 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 44 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK6 15 101297142 101525202 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 24 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK7 11 117204337 117232525 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCSK9 1 55039548 55064852 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCTP 17 55750979 55842830 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCYOX1 2 70257386 70281191 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCYOX1L 5 149358007 149369653 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCYT1A 3 196214222 196287957 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCYT1B 23 24558087 24672677 FALSE 1460 -0.698539880071462 25 24465570 25007193 0.276933305076759 1 0 0.276933305076759 1 0 541623 1 4 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PCYT2 17 81900965 81911464 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDAP1 7 99392048 99408829 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDC 1 186443566 186461122 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD1 2 241849881 241858908 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD10 3 167683298 167734939 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD11 10 103396626 103446292 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 40 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD1LG2 9 5510570 5571254 FALSE 650 1.81115561137557 107 5449869 5629487 0.593481580287395 15 NA 0.593481580287395 15 NA 179618 NA 3 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD2 6 170575295 170584692 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD2L 19 34404384 34426168 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD4 10 110871795 110900006 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD5 19 32581068 32587452 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD6 5 271621 353856 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD6IP 3 33798352 33869707 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCD7 15 65117379 65133836 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCL 9 122798389 122828631 FALSE 689 -0.231710740480526 49 122392240 122820520 0.331933131290263 3 NA 0.331933131290263 3 NA 428280 NA 16 9 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCL2 4 55556525 55592212 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDCL3 2 100562690 100576735 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE10A 6 165327287 165988078 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE11A 2 177623252 178108339 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 24 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE12 3 57556276 57566844 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE1A 2 182140036 182523192 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE1B 12 54549350 54579239 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE1C 7 31751179 32299329 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE2A 11 72576141 72674591 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 33 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE3A 12 20369245 20684381 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE3B 11 14643723 14872044 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE4A 19 10416773 10469631 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE4B 1 65792514 66374579 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE4C 19 18208652 18248200 FALSE 1320 -0.249880581547498 49 18177171 18281093 0.331933131290263 3 NA 0.331933131290263 3 NA 103922 NA 9 18 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE4D 5 58969038 60522120 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE4DIP 1 148808181 149048286 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 52 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE5A 4 119494395 119628991 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE6A 5 149857955 149944793 FALSE 404 -0.510178414155637 34 149597850 150052115 NA 2 NA NA 2 NA 454265 NA 6 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE6B 4 625584 670782 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE6C 10 93612588 93666010 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE6D 2 231732425 231786272 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE6G 17 81650459 81663112 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE6H 12 14973022 14981865 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE7A 8 65717510 65842322 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE7B 6 135851696 136195574 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE8A 15 84980440 85139145 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE8B 5 77210449 77429807 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDE9A 21 42653636 42775509 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDF 16 69328621 69330595 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDGFA 7 497258 520296 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDGFB 22 39223359 39244751 FALSE 1441 1.73142547347641 103 39223545 39244793 0.593481580287395 14 NA 0.593481580287395 14 NA 21248 NA 1 17 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDGFC 4 156760454 156971394 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDGFD 11 103907186 104164379 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDGFRA 4 54229097 54298247 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 64 15 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDGFRB 5 150113837 150155872 FALSE 405 0.638315012719462 75 150053295 150155740 0.593481580287395 6 NA 0.593481580287395 6 NA 102445 NA 2 38 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDGFRL 8 17576433 17644071 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDHA1 23 19343893 19361705 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDHA2 4 95840019 95841474 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDHB 3 58427630 58433857 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDHX 11 34915829 35020591 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDIA2 16 283152 287215 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 12 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDIA3 15 43746392 43773279 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDIA4 7 149003062 149028641 FALSE 572 1.12688572709581 84 148802359 149004042 0.593481580287395 9 NA 0.593481580287395 9 NA 201683 NA 2 11 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDIA5 3 123067062 123225227 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDIA6 2 10783391 10837977 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDIK1L 1 26111165 26125543 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDILT 16 20359170 20404737 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDK1 2 172555373 172608669 FALSE 182 0.143404019637975 63 172504225 172596164 0.54220702508464 4 NA 0.54220702508464 4 NA 91939 NA 2 55 20 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDK2 17 50094737 50112152 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDK3 23 24465221 24541862 FALSE 1460 -0.698539880071462 25 24465570 25007193 0.276933305076759 1 0 0.276933305076759 1 0 541623 1 4 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDK4 7 95583499 95596491 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDLIM1 10 95237572 95291024 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDLIM2 8 22578279 22598025 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDLIM3 4 185500660 185535612 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDLIM4 5 132257671 132273454 FALSE 394 -0.271932115962752 46 131990195 132441120 0.261157737158964 3 NA 0.261157737158964 3 NA 450925 NA 9 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDLIM5 4 94451857 94668227 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 21 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDLIM7 5 177483394 177497606 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDP1 8 93857807 93926066 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDP2 16 66878589 66895754 FALSE 1109 -0.33919625732687 44 66884321 67009101 0.18904974046126 3 NA 0.18904974046126 3 NA 124780 NA 7 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDPK1 16 2537964 2603188 FALSE 1073 0.533245505682404 71 2538262 2597795 0.593481580287395 5 NA 0.593481580287395 5 NA 59533 NA 1 30 3 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDPN 1 13583465 13617957 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDPR 16 70113626 70162537 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDRG1 20 31944342 31952092 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDS5A 4 39822863 39977956 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDS5B 13 32586427 32778019 TRUE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 35 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDSS1 10 26697659 26746798 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDSS2 6 107152557 107459564 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDX1 13 27920020 27926231 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDXDC1 16 14974591 15139339 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 51 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDXK 21 43719094 43762307 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDXP 22 37658727 37666934 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDYN 20 1978757 1994285 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZD11 23 70286595 70290514 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZD2 5 31639410 32110931 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 46 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZD3 11 119185457 119190223 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZD4 23 153802166 153830565 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 15 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZD7 10 101007683 101032295 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 23 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZD8 10 117277274 117375467 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZD9 16 21983865 22001110 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZK1 1 145670852 145708148 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZK1IP1 1 47183593 47191044 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZRN3 3 73382433 73624940 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PDZRN4 12 41188448 41574724 FALSE 866 -0.81872346908015 14 40514460 42098021 0.593443012170704 1 0 0.593443012170704 1 0 1583561 1 4 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEA15 1 160205337 160215376 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEAK1 15 77100656 77420144 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEAK3 19 2274622 2282176 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEAR1 1 156893698 156916434 FALSE 65 -0.406384625980235 41 156886901 156948503 NA 2 NA NA 2 NA 61602 NA 3 24 6 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEBP1 12 118135858 118145584 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEBP4 8 22713251 23000000 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 8 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PECAM1 17 64319415 64413776 FALSE 1215 -0.310157730541577 44 64323838 64858765 0.18904974046126 3 NA 0.18904974046126 3 NA 534927 NA 7 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PECR 2 215996329 216082955 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEF1 1 31629862 31644896 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEG10 7 94656325 94669695 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEG3 19 56810077 56840728 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 23 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PELI1 2 64092652 64144454 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PELI2 14 56117814 56301526 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PELI3 11 66466327 66477337 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PELO 5 52787940 52804046 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PELP1 17 4669774 4704337 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEMT 17 17505563 17591708 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PENK 8 56436674 56446734 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEPD 19 33386950 33521794 FALSE 1328 0.231806776258723 64 33205703 33391273 0.593443012170704 4 NA 0.593443012170704 4 NA 185570 NA 5 16 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PER1 17 8140472 8156506 FALSE 1147 -0.887294624890009 13 8096639 8189086 0.522719719214577 1 0 0.522719719214577 1 0 92447 1 7 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PER2 2 238244038 238290102 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PER3 1 7784320 7845177 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PERM1 1 975204 982093 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PERP 6 138088505 138107511 FALSE 497 1.29742908483319 90 137194867 138092196 0.593481580287395 10 NA 0.593481580287395 10 NA 897329 NA 4 3 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PES1 22 30576625 30607083 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PET100 19 7629737 7631956 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PET117 20 18137873 18143169 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX1 7 92487020 92528531 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 27 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX10 1 2403964 2413797 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX11A 15 89677764 89690783 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX11B 1 145911350 145918837 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX11G 19 7476875 7497449 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX12 17 35574795 35578863 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 6 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX13 2 61017225 61051990 FALSE 142 -0.73704227505101 21 60942397 61470646 0.328777186374237 1 0 0.328777186374237 1 0 528249 1 5 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX14 1 10472288 10630758 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX16 11 45909669 45918812 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX19 1 160276812 160286348 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX2 8 76980258 77001044 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX26 22 18077920 18131138 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX3 6 143450807 143490010 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX5 12 7188685 7218574 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 18 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX5L 3 179794958 180037053 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX6 6 42963870 42979220 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 20 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PEX7 6 136822564 136913937 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PF4 4 73981077 73982124 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PF4V1 4 73853189 73854155 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFAS 17 8247618 8270491 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 30 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFDN1 5 140245039 140303121 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFDN2 1 161100556 161118111 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFDN4 20 54207847 54228052 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFDN5 12 53295291 53299450 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFDN6 6 33289302 33298401 FALSE 457 -0.585863588832874 28 33264074 33313388 NA 2 NA NA 2 NA 49314 NA 7 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFKFB1 23 54932961 54998534 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFKFB2 1 207034366 207081024 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFKFB3 10 6144934 6254644 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFKFB4 3 48517684 48562015 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFKL 21 44300051 44327376 FALSE 1411 -0.796790869313366 18 44231407 44533921 0.387809979850725 1 0 0.387809979850725 1 0 302514 1 8 26 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFKM 12 48105139 48146404 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 28 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFKP 10 3066333 3137712 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 25 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFN1 17 4945652 4949061 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFN2 3 149964904 150050788 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFN3 5 177400107 177400636 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PFN4 2 24115371 24123477 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGA3 11 61203307 61213098 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGA5 11 61241042 61251448 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGAM1 10 97426160 97433441 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGAM2 7 44062727 44065587 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGAM4 23 77968874 77969638 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGAM5 12 132710819 132722734 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGAP1 2 196833004 196927796 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 27 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGAP2 11 3797724 3826371 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGAP3 17 39671122 39696797 FALSE 1173 -0.600812074431575 28 39564387 39699581 NA 2 NA NA 2 NA 135194 NA 8 13 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGBD1 6 28281572 28302549 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGBD2 1 248906196 248919946 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGBD4 15 34102073 34108684 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGBD5 1 230314482 230426371 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGC 6 41736711 41754109 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGD 1 10398592 10420144 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 13 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGF 14 74941834 74955784 FALSE 985 -0.352585010986809 44 74858407 75009033 0.18904974046126 3 NA 0.18904974046126 3 NA 150626 NA 6 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGGHG 11 289135 296107 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGGT1B 5 115204012 115262872 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGK1 23 77910739 78129296 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 42 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGK2 6 49785651 49787307 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGLS 19 17511629 17521288 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGLYRP1 19 46019153 46023065 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGLYRP2 19 15468645 15498956 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGLYRP3 1 153297862 153310718 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGLYRP4 1 153330120 153348840 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGM1 1 63593276 63660245 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGM2 4 37826633 37862937 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGM2L1 11 74330318 74398473 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 14 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGM3 6 83161150 83193936 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGM5 9 68328308 68531061 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGP 16 2211997 2214807 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGPEP1 19 18340587 18369950 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGPEP1L 15 98968230 99007795 FALSE 1060 1.71251399754976 103 98648701 98968644 0.593481580287395 14 NA 0.593481580287395 14 NA 319943 NA 2 5 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGR 11 101029624 101130524 FALSE 810 2.00873685629535 113 101029622 101129770 0.593481580287395 17 NA 0.593481580287395 17 NA 100148 NA 1 51 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGRMC1 23 119236245 119244466 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGRMC2 4 128269237 128288829 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PGS1 17 78378640 78425114 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 11 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHACTR1 6 12716805 13290484 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHACTR2 6 143536845 143831185 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHACTR3 20 59577509 59847711 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHACTR4 1 28369582 28500369 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHAX 5 126600268 126627252 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHB 17 49404049 49414905 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHB2 12 6965327 6970825 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHC1 12 8913896 8941467 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 18 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHC2 1 33323623 33431052 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHC3 3 170086732 170181749 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHETA1 12 111360651 111369121 FALSE 912 0.916334203900635 81 111347634 111447046 0.593481580287395 7 NA 0.593481580287395 7 NA 99412 NA 4 4 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHETA2 22 42074251 42079441 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHEX 23 22032441 22251310 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF1 6 33410399 33416453 FALSE 459 -0.394054757052465 41 33323048 33443970 NA 2 NA NA 2 NA 120922 NA 5 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF10 6 169703905 169725566 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF11 13 49495610 49528987 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF12 17 28905250 28951771 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 21 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF13 1 6613685 6624033 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF14 7 10973336 11169630 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 20 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF19 9 120855652 120894896 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF2 9 93576407 93679587 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 25 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF20 20 35771974 35950381 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF20L1 8 132775358 132848807 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 25 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF21A 11 45929323 46121178 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 20 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF21B 22 44881162 45009999 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF23 17 7235028 7239722 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF24 9 34957608 34982544 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF3 6 63635820 63779336 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 41 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF5A 22 41459717 41468725 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF6 23 134373253 134428791 TRUE 1515 2.19875587486 118 134373269 134429138 0.593481580287395 20 NA 0.593481580287395 20 NA 55869 NA 1 41 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF7 3 52410657 52423641 FALSE 259 1.0569035733277 83 52400149 52410974 0.593481580287395 8 NA 0.593481580287395 8 NA 10825 NA 3 13 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHF8 23 53936676 54048958 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHGDH 1 119648411 119744226 FALSE 48 -0.842352747885532 15 119623366 119906598 0.449390955025597 1 0 0.449390955025597 1 0 283232 1 5 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHGR1 15 40351033 40356434 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHIP 6 78935867 79078236 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 43 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHKA1 23 72578814 72714319 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 32 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHKA2 23 18892300 18984598 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 35 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHKB 16 47461123 47701523 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 33 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHKG1 7 56080283 56092996 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHKG2 16 30748270 30761176 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLDA1 12 76025447 76033932 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLDA2 11 2928273 2929455 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLDA3 1 201464383 201469237 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLDB1 11 118606440 118658038 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLDB2 3 111732497 111976517 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 25 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLDB3 19 43474954 43504935 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLPP1 18 62715450 62980433 FALSE 1263 -0.646518978860434 22 61490571 62978355 1 2 1 1 2 1 1487784 1 7 27 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHLPP2 16 71637835 71724701 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHOSPHO1 17 49223362 49230766 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHOSPHO2 2 169694454 169701708 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHOX2A 11 72239077 72245664 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHOX2B 4 41744082 41748970 TRUE 333 1.20013608529306 87 41739155 41748648 0.593481580287395 9 NA 0.593481580287395 9 NA 9493 NA 1 13 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHPT1 9 136848724 136851027 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHRF1 11 576486 612222 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHTF1 1 113696831 113759489 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHTF2 7 77798792 77957503 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHYH 10 13277796 13302412 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHYHD1 9 128920895 128942041 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHYHIP 8 22219704 22232341 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHYHIPL 10 59176590 59247774 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PHYKPL 5 178208497 178232791 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PI15 8 74824534 74855029 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PI16 6 36948263 36964837 FALSE 462 -0.524992064635535 34 36717398 37027971 NA 2 NA NA 2 NA 310573 NA 7 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PI3 20 45174876 45176544 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PI4K2A 10 97640686 97676434 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PI4K2B 4 25233975 25279092 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PI4KA 22 20707691 20859417 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 67 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PI4KB 1 151291797 151327715 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIANP 12 6693792 6700800 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIAS1 15 68054179 68198603 FALSE 1034 -0.650081137244343 25 67202833 68183661 0.276933305076759 1 0 0.276933305076759 1 0 980828 1 6 20 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIAS2 18 46803224 46920160 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIAS3 1 145848522 145859836 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIAS4 19 4007646 4039386 FALSE 1278 -0.169406920300239 52 3959118 4043288 0.426118104232275 3 NA 0.426118104232275 3 NA 84170 NA 3 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIBF1 13 72782059 73016461 FALSE 948 1.62404837704279 100 72752382 72782119 0.593481580287395 13 NA 0.593481580287395 13 NA 29737 NA 3 20 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PICALM 11 85957684 86069882 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PICK1 22 38056311 38075701 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PID1 2 228850526 229271285 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIDD1 11 799179 809753 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIEZO1 16 88715338 88785220 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 51 8 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIEZO2 18 10666483 11148762 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 55 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIF1 15 64815632 64825668 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 16 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIFO 1 111346288 111353013 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGA 23 15319451 15335580 TRUE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGB 15 55318960 55355648 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGBOS1 15 55317184 55319161 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGC 1 172370189 172444086 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGF 2 46580937 46617119 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGG 4 499210 540196 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGH 14 67581955 67600287 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGK 1 77088990 77219430 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGL 17 16217191 16351797 FALSE 1153 0.631563052582908 75 16034826 16223222 0.593481580287395 6 NA 0.593481580287395 6 NA 188396 NA 3 12 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGM 1 160024953 160031991 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGN 18 61905255 62187118 FALSE 1263 -0.646518978860434 22 61490571 62978355 1 2 1 1 2 1 1487784 1 7 29 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGO 9 35088688 35096601 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGP 21 37059170 37073170 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGQ 16 566995 584136 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGR 1 206928518 206946466 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGS 17 28553383 28571872 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGT 20 45416067 45456934 FALSE 1384 -0.229789907358964 49 45348311 45425772 0.331933131290263 3 NA 0.331933131290263 3 NA 77461 NA 6 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGU 20 34560542 34698790 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGV 1 26787472 26798398 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGW 17 36535020 36539310 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGX 3 196639775 196736007 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 19 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGY 4 88521573 88521789 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 1 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIGZ 3 196946343 196969060 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 8 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIH1D1 19 49446298 49453497 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIH1D2 11 112064010 112074274 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIH1D3 23 107206632 107244243 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3AP1 10 96593312 96720514 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 19 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3C2A 11 17077730 17207983 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 36 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3C2B 1 204422628 204494724 FALSE 84 0.0730039668890317 60 204410206 204979607 0.593443012170704 3 NA 0.593443012170704 3 NA 569401 NA 5 52 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3C2G 12 18247614 18648416 FALSE 855 1.22621308701019 87 18242974 18648442 0.593481580287395 9 NA 0.593481580287395 9 NA 405468 NA 2 40 9 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3C3 18 41955206 42087830 FALSE 1252 1.67932012107204 102 41955252 42085511 0.593481580287395 13 NA 0.593481580287395 13 NA 130259 NA 1 56 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3CA 3 179148114 179240093 FALSE 296 1.11990635751143 84 177025548 179245109 0.593481580287395 9 NA 0.593481580287395 9 NA 2219561 NA 6 57 7 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3CB 3 138652699 138834938 FALSE 290 0.492429452862148 71 138633043 139347013 0.593481580287395 5 NA 0.593481580287395 5 NA 713970 NA 8 34 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3CD 1 9651732 9729114 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 36 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3CG 7 106865278 106907145 FALSE 554 2.44912760521518 123 106248413 107045189 0.593481580287395 24 NA 0.593481580287395 24 NA 796776 NA 4 27 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3IP1 22 31281593 31292534 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3R1 5 68215720 68301821 TRUE 381 1.93425463497933 111 68215949 68228182 0.593481580287395 16 NA 0.593481580287395 16 NA 12233 NA 1 60 6 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3R2 19 18153118 18170540 TRUE 1319 1.77375950181051 105 18153115 18175590 0.593481580287395 14 NA 0.593481580287395 14 NA 22475 NA 3 25 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3R3 1 46040140 46133036 TRUE 17 1.91961046811878 111 46040222 46043803 0.593481580287395 16 NA 0.593481580287395 16 NA 3581 NA 2 34 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3R4 3 130678935 130746829 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3R5 17 8878911 8965712 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIK3R6 17 8802723 8867677 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIKFYVE 2 208266267 208358751 FALSE 208 0.994930512898928 82 208236403 208271580 0.593481580287395 8 NA 0.593481580287395 8 NA 35177 NA 2 48 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PILRA 7 100367530 100400099 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PILRB 7 100352176 100367733 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIM1 6 37170203 37175426 FALSE 463 2.46673568142431 123 37028191 37175236 0.593481580287395 24 NA 0.593481580287395 24 NA 147045 NA 2 12 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIM2 23 48913182 48919024 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIM3 22 49960513 49964080 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIMREG 17 6444415 6451469 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIN1 19 9835257 9849682 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIN4 23 72181353 72302926 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PINK1 1 20633455 20651511 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PINLYP 19 43576800 43583964 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PINX1 8 10725399 10839884 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP 7 143132077 143139746 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP4K2A 10 22534849 22714555 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP4K2B 17 38765689 38800126 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP4K2C 12 57591174 57603418 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP4P1 14 20457719 20461612 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP4P2 8 90993796 91041064 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP5K1A 1 151197949 151249536 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP5K1B 9 68705414 69009176 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP5K1C 19 3630183 3700479 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIP5KL1 9 127920879 127930797 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIPOX 17 28950513 29057220 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 30 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIR 23 15384799 15493564 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIRT 17 10822475 10838445 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PISD 22 31618491 31662432 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITHD1 1 23778405 23788232 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITPNA 17 1517718 1562816 FALSE 1135 -0.809094444314198 15 1361226 1614943 0.449390955025597 1 0 0.449390955025597 1 0 253717 1 6 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITPNB 22 27851669 27920134 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITPNC1 17 67377281 67697261 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITPNM1 11 67491768 67506263 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 24 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITPNM2 12 122983480 123150015 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITPNM3 17 6451264 6556494 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 24 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITRM1 10 3137728 3172841 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 28 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITX1 5 135027735 135034813 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITX2 4 110617423 110642123 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PITX3 10 102230186 102241474 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIWIL1 12 130337887 130372637 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIWIL2 8 22275297 22357563 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIWIL3 22 24719034 24774720 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PIWIL4 11 94543840 94621421 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 27 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PJA1 23 69160851 69165793 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PJA2 5 109334709 109409994 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 13 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PJVK 2 178451346 178461409 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKD1 16 2088710 2135898 FALSE 1069 1.12298647206621 84 2034914 2090132 0.593481580287395 9 NA 0.593481580287395 9 NA 55218 NA 4 78 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKD1L1 7 47740202 47948491 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 67 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKD1L3 16 71929538 71999978 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 32 11 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKD2 4 88007668 88077777 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKD2L1 10 100288154 100330486 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKD2L2 5 137887968 137942747 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKDCC 2 42048020 42058528 FALSE 129 -0.788642704622343 18 39178582 42057703 0.387809979850725 1 0 0.387809979850725 1 0 2879121 1 7 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKDREJ 22 46255663 46263355 FALSE 1449 -0.0528806791342838 56 46219811 46262539 0.593443012170704 3 NA 0.593443012170704 3 NA 42728 NA 3 27 8 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKHD1 6 51615300 52087625 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 85 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKHD1L1 8 109362477 109530330 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 91 15 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKIA 8 78516139 78605267 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKIB 6 122471917 122726373 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKIG 20 44531785 44624247 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKLR 1 155289293 155301438 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKM 15 72199029 72231822 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKMYT1 16 2968024 2980539 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKN1 19 14433053 14471867 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 26 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKN2 1 88684222 88836255 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 23 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKN3 9 128702523 128720918 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKNOX1 21 42974510 43033931 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKNOX2 11 125164687 125433389 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKP1 1 201283452 201332993 FALSE 80 -0.765421999083083 18 201214235 201384771 0.387809979850725 1 0 0.387809979850725 1 0 170536 1 4 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKP2 12 32790745 32896840 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKP3 11 392614 404908 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PKP4 2 158456964 158682879 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA1A 3 119597842 119629811 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 12 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G10 16 14672545 14694669 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G12A 4 109709989 109730077 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G12B 10 72935170 72954778 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G15 16 68245304 68261062 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G16 11 63573195 63616883 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G1B 12 120322111 120327789 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G2A 1 19975431 19980416 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G2C 1 20161253 20177424 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G2D 1 20111939 20119566 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G2E 1 19920009 19923617 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G2F 1 20139326 20150386 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G3 22 31134809 31140607 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G4A 1 186828953 186988981 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 19 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G4B 15 41837775 41848147 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 21 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G4C 19 48047843 48110817 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G4D 15 42067009 42094554 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 22 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G4E 15 41981582 42051190 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G4F 15 42139034 42156636 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 21 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G5 1 20028179 20091190 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G6 22 38111495 38205690 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2G7 6 46704201 46735693 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLA2R1 2 159932006 160062610 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAA 9 26904083 26947463 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAC1 23 134565838 134764322 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAC8 4 83090048 83137075 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAC8L1 5 146084386 146104369 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAC9 10 80131682 80145359 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAG1 8 56160904 56211324 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAGL1 6 143940300 144064599 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAGL2 20 32192503 32207791 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAT 8 42175233 42207724 FALSE 611 -0.755064063426123 18 42051997 42193139 0.387809979850725 1 0 0.387809979850725 1 0 141142 1 3 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAU 10 73909177 73917497 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLAUR 19 43646095 43670547 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLB1 2 28457145 28643788 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 58 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLBD1 12 14503661 14568349 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLBD2 12 113358566 113391625 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCB1 20 8077251 8968360 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 35 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCB2 15 40278176 40307935 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 38 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCB3 11 64251523 64269150 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 30 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCB4 20 9068763 9481242 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 38 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCD1 3 38007496 38029762 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCD3 17 45108967 45133354 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 18 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCD4 2 218607765 218637184 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCE1 10 94030812 94332823 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 43 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCG1 20 41136960 41196801 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 33 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCG2 16 81739097 81962693 FALSE 1120 0.740440080312612 77 81779351 81956854 0.593481580287395 6 NA 0.593481580287395 6 NA 177503 NA 1 58 17 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCH1 3 155375580 155745067 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCH2 1 2425980 2505530 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 35 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCL1 2 197804702 198572581 FALSE 202 -0.104429608205164 54 197805147 198086127 0.569455701337318 3 NA 0.569455701337318 3 NA 280980 NA 1 15 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCL2 3 16802651 17090594 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCXD2 3 111674676 111846447 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCXD3 5 41306954 41510628 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLCZ1 12 18683169 18738100 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLD1 3 171600405 171810950 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLD2 17 4807096 4823434 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 25 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLD3 19 40348456 40380439 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLD4 14 104924713 104937790 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLD5 1 242082986 242524696 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLD6 17 17200995 17206315 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEC 8 143915147 143976734 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 76 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEK 2 68365173 68397453 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEK2 14 67386983 67412200 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA1 10 122374696 122442602 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA2 8 38901235 38973909 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA3 2 178480468 178516462 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA4 19 48837097 48868632 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA5 12 19129752 19376400 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 34 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA6 1 204218851 204377665 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA7 11 16777317 17014443 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHA8 7 30027404 30130483 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHB1 11 73646178 73662819 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHB2 2 131104847 131353709 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 25 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHD1 14 69484692 69531551 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHF1 19 29665056 29675457 FALSE 1324 -0.357113338055037 41 29611949 29714885 NA 2 NA NA 2 NA 102936 NA 3 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHF2 8 95133804 95156684 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG1 6 150599883 150843665 FALSE 503 1.18628413956388 87 150599864 150843644 0.593481580287395 9 NA 0.593481580287395 9 NA 243780 NA 1 40 5 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG2 19 39412585 39428415 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG3 14 64704102 64750247 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG4 16 67277510 67289499 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG4B 5 92151 189972 FALSE 366 -0.0813597508595068 54 92226 256841 0.569455701337318 3 NA 0.569455701337318 3 NA 164615 NA 4 29 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG5 1 6466092 6520061 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG6 12 6310436 6328506 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 19 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHG7 12 92702843 92772455 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHH1 14 67533301 67589612 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 30 6 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHH2 2 43637273 43767987 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 36 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHH3 17 42667914 42676994 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 16 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHJ1 19 2230084 2237704 FALSE 1274 1.8985523973973 111 2164181 2232456 0.593481580287395 16 NA 0.593481580287395 16 NA 68275 NA 3 14 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHM1 17 45435900 45490749 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHM2 1 15684332 15734769 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHM3 2 207821288 208025560 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHN1 1 966497 975865 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHO1 1 150149183 150164720 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHO2 15 64841883 64868007 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLEKHS1 10 113751454 113783429 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 14 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLET1 11 112248479 112260860 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLG 6 160702238 160753315 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 19 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLGLB1 2 87002559 87021852 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLGLB2 2 87748087 87758793 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLGRKT 9 5357973 5437878 FALSE 649 -0.743244922243354 18 5164015 5447729 0.387809979850725 1 0 0.387809979850725 1 0 283714 1 5 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLIN1 15 89664365 89679427 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLIN2 9 19108375 19149290 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLIN3 19 4838341 4867768 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLIN4 19 4502180 4518465 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLIN5 19 4522531 4535224 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLK1 16 23677656 23690367 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLK2 5 58453982 58460260 FALSE 379 0.87728495609029 80 57481634 58459942 0.593481580287395 7 NA 0.593481580287395 7 NA 978308 NA 2 16 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLK3 1 44800225 44805990 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 15 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLK4 4 127880861 127899195 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLK5 19 1524074 1536046 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 10 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLLP 16 57248547 57284687 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLN 6 118548298 118560730 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLOD1 1 11934205 11975538 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLOD2 3 146069440 146163653 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLOD3 7 101205977 101218420 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLP1 23 103773718 103792619 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLP2 23 49171926 49175239 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPBP 8 37762593 37779767 FALSE 602 -0.505077512744522 34 37737957 37840791 NA 2 NA NA 2 NA 102834 NA 3 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPP1 5 55424854 55535050 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPP2 19 281040 291504 FALSE 1268 -0.550469679268302 31 110858 440853 NA 2 NA NA 2 NA 329995 NA 6 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPP3 1 56494747 56645301 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPP4 10 120456954 120589855 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPP5 8 38263130 38269243 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPP6 9 4662315 4665258 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPP7 9 131289459 131359022 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 5 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPPR1 9 101028709 101325135 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPPR2 19 11355386 11365698 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPPR3 19 812488 821977 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPPR4 1 99263953 99309590 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLPPR5 1 98890245 99005032 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLRG1 4 154535006 154550435 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLS1 3 142596387 142713664 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLS3 23 115561174 115650861 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLSCR1 3 146515180 146544864 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLSCR2 3 146391421 146495991 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLSCR3 17 7389727 7394843 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLSCR4 3 146192339 146251179 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLSCR5 3 146576555 146606216 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLTP 20 45898621 45912155 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLVAP 19 17351448 17377350 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXDC1 17 39063303 39154394 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXDC2 10 19816239 20289856 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNA1 3 126988594 127037392 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 42 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNA2 1 208022242 208244320 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 37 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNA3 23 154458281 154477779 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 36 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNA4 7 132123332 132648688 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 38 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNB1 3 48403854 48430051 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 43 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNB2 22 50274979 50307627 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 40 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNB3 23 153764196 153779346 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 41 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXNC1 12 94148723 94307675 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 35 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PLXND1 3 129555175 129606818 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 42 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PM20D1 1 205828022 205850132 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PM20D2 6 89146050 89165565 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMAIP1 18 59899948 59904306 TRUE 1262 0.817722595194636 79 59898096 60372169 0.593481580287395 7 NA 0.593481580287395 7 NA 474073 NA 2 11 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMCH 12 102196459 102197845 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 5 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMEL 12 55954105 55973317 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 26 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMEPA1 20 57648392 57711536 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMF1 1 156212993 156240042 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMF1-BGLAP 1 156212982 156243332 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMFBP1 16 72112157 72176878 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PML 15 73994673 74047812 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMM1 22 41576894 41589890 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMM2 16 8788823 8849331 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMP2 8 81440326 81447523 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 4 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMP22 17 15229777 15265357 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMPCA 9 136410570 136423761 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMPCB 7 103297422 103329511 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 27 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMS1 2 189784085 189877629 TRUE 196 0.560581351590903 73 189784514 190057314 0.593481580287395 5 NA 0.593481580287395 5 NA 272800 NA 3 33 2 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMS2 7 5973239 6009125 TRUE 519 -0.179912547532896 52 5563734 6005889 0.426118104232275 3 NA 0.426118104232275 3 NA 442155 NA 7 26 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PMVK 1 154924734 154936991 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNCK 23 153669730 153689010 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNISR 6 99398051 99425331 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNKD 2 218270392 218346793 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 25 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNKP 19 49859882 49878351 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNLDC1 6 159800249 159820704 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 19 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNLIP 10 116545931 116567855 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNLIPRP1 10 116590385 116609175 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 12 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNLIPRP3 10 116427867 116477957 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA1 14 73711783 73714372 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA2 8 26504686 26514092 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA3 23 153056409 153060467 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA5 23 152988824 152994127 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA6E 23 153395640 153401420 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA6F 23 153317681 153321822 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA8A 19 46466491 46471563 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMA8B 19 46486906 46496498 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNMT 17 39667981 39670475 FALSE 1173 -0.600812074431575 28 39564387 39699581 NA 2 NA NA 2 NA 135194 NA 8 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNN 14 39175183 39183218 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNO1 2 68157844 68176238 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNOC 8 28316986 28343355 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNP 14 20468954 20477094 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA1 6 36243203 36312229 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA2 11 818902 825573 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA3 22 43923739 43964488 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA4 23 7898247 7927739 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA5 22 43879678 43892013 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA6 19 7534004 7561764 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 35 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA7 9 137459953 137550534 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPLA8 7 108470422 108569666 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPO 17 47941506 47949308 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNPT1 2 55634265 55693910 FALSE 138 -0.855981369957181 15 55336671 58154699 0.449390955025597 1 0 0.449390955025597 1 0 2818028 1 7 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNRC1 6 89080751 89085160 FALSE 475 1.87914654836112 109 89080750 89098618 0.593481580287395 16 NA 0.593481580287395 16 NA 17868 NA 2 12 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PNRC2 1 23956839 23963462 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POC1A 3 52075253 52154690 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POC1B 12 89419718 89526024 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POC1B-GALNT4 12 89519408 89526262 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POC5 5 75674124 75717481 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PODN 1 53062052 53085502 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PODNL1 19 13931187 13953392 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PODXL 7 131500262 131558217 FALSE 564 2.6551178363161 126 131488163 131506546 0.593481580287395 28 NA 0.593481580287395 28 NA 18383 NA 2 11 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PODXL2 3 127629181 127672809 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POF1B 23 85277396 85379743 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POFUT1 20 32207880 32238667 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POFUT2 21 45263928 45287898 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POGK 1 166839447 166856344 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POGLUT1 3 119468938 119494708 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POGZ 1 151402724 151459465 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLA1 23 24693919 24996986 FALSE 1460 -0.698539880071462 25 24465570 25007193 0.276933305076759 1 0 0.276933305076759 1 0 541623 1 4 37 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLA2 11 65261762 65305589 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLB 8 42338454 42371808 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLD1 19 50384204 50418016 TRUE 1354 1.12344358889112 84 50378745 50417274 0.593481580287395 9 NA 0.593481580287395 9 NA 38529 NA 3 34 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLD2 7 44114681 44124358 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLD3 11 74493851 74669117 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 16 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLD4 11 67350777 67356972 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLDIP2 17 28347177 28357522 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLDIP3 22 42583721 42614962 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLE 12 132623753 132687365 TRUE 930 1.29721181891941 90 132621599 132687415 0.593481580287395 10 NA 0.593481580287395 10 NA 65816 NA 2 62 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLE2 14 49643555 49688422 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLE3 9 113407235 113410672 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLE4 2 74958492 74970128 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLG 15 89305198 89334861 FALSE 1050 0.848645165322412 80 89244011 89319110 0.593481580287395 7 NA 0.593481580287395 7 NA 75099 NA 2 40 4 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLG2 17 64477785 64497036 FALSE 1215 -0.310157730541577 44 64323838 64858765 0.18904974046126 3 NA 0.18904974046126 3 NA 534927 NA 7 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLH 6 43576150 43615660 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLI 18 54269404 54321266 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLK 5 75511756 75601144 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLL 10 101578882 101588270 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLM 7 44072247 44082540 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLN 4 2071918 2242121 FALSE 326 -0.697910858685582 25 1983477 2331072 0.276933305076759 1 0 0.276933305076759 1 0 347595 1 7 36 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLQ 3 121431427 121546641 FALSE 280 0.599408957718328 75 121431457 121545972 0.593481580287395 6 NA 0.593481580287395 6 NA 114515 NA 1 47 4 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR1A 2 86020216 86106155 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR1B 2 112541915 112577150 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR1C 6 43509702 43562419 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 44 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR1D 13 27620742 27744237 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR1E 9 37485935 37503697 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2A 17 7484366 7514616 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 38 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2B 4 56977722 57031168 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 25 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2C 16 57462387 57472010 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2D 2 127843551 127858157 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2E 19 1086579 1095380 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2F 22 37952607 38041915 FALSE 1438 -0.737249211920491 21 37725291 37967650 0.328777186374237 1 0 0.328777186374237 1 0 242359 1 10 29 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2G 11 62761544 62766710 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2H 3 184361718 184368596 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2I 19 36113710 36115346 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2J 7 102473118 102478907 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2J2 7 102665368 102671629 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2J3 7 102537918 102572653 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 6 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2K 8 100150584 100154002 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2L 11 837356 842545 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR2M 15 57706629 57782762 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3A 10 77969251 78029545 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 32 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3B 12 106357658 106510198 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3C 1 145824088 145842505 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3D 8 22245104 22254600 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3E 16 22297375 22335103 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3F 20 18467127 18484643 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3G 5 90471748 90514553 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3GL 1 145964702 145978848 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3H 22 41525804 41544606 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLR3K 16 46407 53628 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POLRMT 19 617224 633604 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 26 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POM121 7 72879365 72951440 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POM121C 7 75416787 75486271 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 16 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POM121L12 7 53035642 53036924 FALSE 533 -0.636373738560084 28 50463408 55129820 NA 2 NA NA 2 NA 4666412 NA 8 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POM121L2 6 27285903 27312170 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMC 2 25160853 25168903 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMGNT1 1 46188682 46220305 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMGNT2 3 43079232 43106076 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMK 8 43093506 43123434 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMP 13 28659104 28678925 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMT1 9 131502902 131523806 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMT2 14 77274956 77320884 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POMZP3 7 76609986 76627261 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PON1 7 95297676 95324707 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PON2 7 95404863 95435329 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PON3 7 95359944 95396368 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POP1 8 98117297 98159834 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 20 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POP4 19 29604017 29617237 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 8 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POP5 12 120578764 120581398 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POP7 7 100706053 100707495 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POPDC2 3 119636457 119665324 FALSE 277 -0.549951694983867 31 119616037 119817077 NA 2 NA NA 2 NA 201040 NA 6 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POPDC3 6 105158280 105179995 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POR 7 75899200 75986855 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PORCN 23 48508962 48520814 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POSTN 13 37562583 37598844 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POT1 7 124822386 124929983 TRUE 559 1.33033924388814 90 124822369 126439090 0.593481580287395 10 NA 0.593481580287395 10 NA 1616721 NA 2 36 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEB3 15 21408243 21440451 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEC 18 14507339 14543585 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTED 21 13609858 13641585 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEE 2 131218067 131265278 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEF 2 130074030 130129222 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 16 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEG 14 19402486 19434341 FALSE 962 -0.552828340147654 29 18601367 19748358 1 2 1 1 2 1 1146991 1 6 8 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEH 22 15690026 15721631 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEI 2 130459455 130509666 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEJ 2 130611481 130658091 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 16 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POTEM 14 18967434 18999012 FALSE 962 -0.552828340147654 29 18601367 19748358 1 2 1 1 2 1 1146991 1 6 8 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU1F1 3 87259404 87276587 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU2AF1 11 111352252 111455630 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU2F1 1 167220829 167427345 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU2F2 19 42086110 42196585 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU2F3 11 120236640 120319944 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU3F1 1 38044611 38046794 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU3F2 6 98834592 98839470 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU3F3 2 104855511 104858574 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU3F4 23 83508261 83512127 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU4F1 13 78598362 78603560 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU4F2 4 146638893 146642474 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU4F3 5 146338839 146341722 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU5F1 6 31164337 31180731 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 8 2 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU5F1B 8 127322183 127420066 FALSE 637 4.54977513834599 137 125436307 127746790 0.593481580287395 107 NA 0.593481580287395 107 NA 2310483 NA 4 5 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU5F2 5 93733220 93741637 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU6F1 12 51186936 51217708 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 POU6F2 7 38977998 39493095 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PP2D1 3 19979961 20012330 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPA1 10 70202830 70233911 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPA2 4 105369077 105474081 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPAN 19 10106289 10111634 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPAN-P2RY11 19 10106223 10114780 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPARA 22 46150521 46243756 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 9 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPARD 6 35342558 35428191 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPARG 3 12287368 12434356 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 323 19 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPARGC1A 4 23755041 23904089 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPARGC1B 5 149730298 149855022 FALSE 404 -0.510178414155637 34 149597850 150052115 NA 2 NA NA 2 NA 454265 NA 6 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPAT 4 56393362 56435615 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPBP 4 73987038 73988197 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPCDC 15 75023555 75117462 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPCS 1 42456117 42473385 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPDPF 20 63520724 63522206 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPDPFL 8 49054311 49076090 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPEF1 23 18675909 18827921 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPEF2 4 75859864 75902571 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPFIA1 11 70270700 70385312 FALSE 796 -0.528927183156658 34 70103077 71501385 NA 2 NA NA 2 NA 1398308 NA 7 29 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPFIA2 12 81257975 81759553 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 35 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPFIA3 19 49119389 49151026 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPFIA4 1 203026498 203078740 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPFIBP1 12 27523431 27695564 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 29 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPFIBP2 11 7513298 7657127 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 31 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPHLN1 12 42238447 42459715 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIA 7 44796680 44824564 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIAL4A 1 120889746 120890405 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIAL4C 1 149583865 149584464 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIAL4D 1 145241630 145242124 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIAL4G 1 148479824 148483679 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIB 15 64155812 64163205 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIC 5 123023250 123036741 FALSE 392 -0.336901155452395 44 122775231 124648866 0.18904974046126 3 NA 0.18904974046126 3 NA 1873635 NA 7 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPID 4 158709134 158723396 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIE 1 39692182 39763914 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIF 10 79347469 79355337 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIG 2 169584340 169641406 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 16 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIH 1 42658425 42676758 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIL1 6 36854827 36875024 FALSE 462 -0.524992064635535 34 36717398 37027971 NA 2 NA NA 2 NA 310573 NA 7 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIL2 22 21666009 21700015 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIL3 2 200870907 200889303 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIL4 6 149504733 149546038 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIL6 6 109390215 109441171 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIP5K1 15 43533462 43590253 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPIP5K2 5 103120149 103212799 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 33 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPL 16 4882507 4960741 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 34 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1A 14 60245752 60299087 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1B 2 44167969 44244384 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1D 17 60600183 60666280 FALSE 1209 1.69741071156811 102 60525925 60666291 0.593481580287395 14 NA 0.593481580287395 14 NA 140366 NA 2 22 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1E 17 58755869 58985176 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1F 22 21919420 21952837 FALSE 1420 -0.805714594408242 15 21773018 22556827 0.449390955025597 1 0 0.449390955025597 1 0 783809 1 7 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1G 2 27381194 27409687 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1H 12 62643982 62935037 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1J 1 112709994 112715477 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1K 4 88257620 88284769 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1L 3 160755602 161078907 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1M 3 52245793 52250597 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPM1N 19 45488777 45502510 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPME1 11 74171099 74254703 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPOX 1 161166410 161178013 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1CA 11 67398183 67421183 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 29 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1CB 2 28751640 28802940 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1CC 12 110719680 110742939 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R10 6 30600400 30618612 FALSE 442 -0.707992332207312 21 30547554 30653233 0.328777186374237 1 0 0.328777186374237 1 0 105679 1 8 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R11 6 30066709 30070333 FALSE 439 -0.82923210363861 15 29953327 30073259 0.449390955025597 1 0 0.449390955025597 1 0 119932 1 3 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R12A 12 79773563 79935460 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R12B 1 202348699 202592706 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R12C 19 55090913 55117559 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 20 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R13B 14 103733195 103847590 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R13L 19 45379634 45406349 FALSE 1348 0.0505055964886688 60 45373781 45485732 0.593443012170704 3 NA 0.593443012170704 3 NA 111951 NA 5 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R14A 19 38251237 38256591 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R14B 11 64244480 64246941 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R14C 6 150143076 150250357 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R14D 15 40815445 40828709 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R15A 19 48872392 48876057 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R15B 1 204403387 204411791 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 9 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R16A 8 144477969 144502121 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 11 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R16B 20 38805705 38923024 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R17 7 31686715 31708455 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R18 6 30676389 30687895 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R1A 12 54575387 54588659 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R1B 17 39626740 39636626 FALSE 1173 -0.600812074431575 28 39564387 39699581 NA 2 NA NA 2 NA 135194 NA 8 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R1C 2 181954241 182131398 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R2 3 195514425 195543386 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R21 2 48440598 48515391 FALSE 136 -0.842193967001169 15 48346226 48725689 0.449390955025597 1 0 0.449390955025597 1 0 379463 1 7 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R26 9 135479079 135488893 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R27 17 81833492 81835050 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R2B 5 156850538 156852528 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R2C 23 42777368 42778247 FALSE 1470 -0.782849162930595 18 41447868 44542840 0.387809979850725 1 0 0.387809979850725 1 0 3094972 1 10 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R32 11 61481120 61490931 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R35 7 100435282 100436565 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R36 14 64549902 64589380 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R37 19 45091396 45148077 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R3A 7 113876777 114075920 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R3B 8 9136255 9151574 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R3C 10 91628442 91633054 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R3D 20 59936668 59940297 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R3E 14 23295643 23302848 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R3F 23 49269843 49301461 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R3G 6 5084581 5089487 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R42 8 66964099 67056604 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R7 2 241149576 241183652 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R8 1 27830778 27851676 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R9A 7 94907202 95296415 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 28 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP1R9B 17 50133735 50150630 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2CA 5 134194334 134226142 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2CB 8 30774457 30814314 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R1A 19 52190039 52229533 TRUE 1358 2.19031962000989 118 52170944 52229732 0.593481580287395 20 NA 0.593481580287395 20 NA 58788 NA 2 39 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R1B 11 111726908 111766427 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R2A 8 26291491 26372680 FALSE 590 0.917589892246912 81 26286546 26372715 0.593481580287395 7 NA 0.593481580287395 7 NA 86169 NA 1 33 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R2B 5 146581146 147084784 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R2C 4 6320578 6563600 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R2D 10 131900644 131959834 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R3A 3 135965673 136147891 FALSE 286 0.368630972827899 68 134790367 136003422 0.389403197422789 6 NA 0.389403197422789 6 NA 1213055 NA 2 22 3 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R3C 14 35085467 35122517 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R5A 1 212285537 212361863 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R5B 11 64917553 64934473 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R5C 14 101761798 101927989 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R5D 6 42984499 43012342 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP2R5E 14 63371357 63543374 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP3CA 4 101023409 101348278 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP3CB 10 73436428 73496024 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP3CC 8 22440819 22541142 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP3R1 2 68178857 68256237 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP3R2 9 101591615 101595021 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP4C 16 30075978 30085377 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP4R1 18 9546791 9615240 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP4R2 3 72996785 73069199 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP4R3A 14 91457611 91510554 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP4R3B 2 55547292 55618880 FALSE 138 -0.855981369957181 15 55336671 58154699 0.449390955025597 1 0 0.449390955025597 1 0 2818028 1 7 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP4R3C 23 27460211 27463341 FALSE 1461 0.0302319641752109 58 25007418 30560284 0.387728048050399 4 NA 0.387728048050399 4 NA 5552866 NA 16 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP4R4 14 94146128 94279735 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP5C 19 46346994 46392981 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP5D1 19 46480796 46601200 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP6C 9 125146573 125189939 TRUE 691 1.95337368935193 111 125145427 125171103 0.593481580287395 17 NA 0.593481580287395 17 NA 25676 NA 1 23 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP6R1 19 55229780 55258995 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 22 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP6R2 22 50343304 50445090 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPP6R3 11 68460731 68615334 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 25 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPRC1 10 102132994 102150331 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 28 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPT1 1 40071461 40097727 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPT2 6 32153441 32163680 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 10 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPT2-EGFL8 6 32153845 32171978 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 22 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPTC7 12 110533245 110583320 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPWD1 5 65563236 65587549 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PPY 17 43940804 43942468 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PQBP1 23 48897912 48903143 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PQLC1 18 79902420 79951664 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PQLC2 1 19312326 19329300 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PQLC2L 3 157543246 157677749 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PQLC3 2 11155198 11178874 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAC1 17 48721719 48722522 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 2 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAC2 17 48723168 48724758 FALSE 1196 0.0908930128575791 61 48530668 48724646 0.315195151543259 5 NA 0.315195151543259 5 NA 193978 NA 11 3 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRADC1 2 73228006 73233238 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAF2 23 49071156 49074071 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAG1 8 8317736 8386498 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 19 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAM1 19 8490056 8503112 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAME 22 22547701 22559361 FALSE 1420 -0.805714594408242 15 21773018 22556827 0.449390955025597 1 0 0.449390955025597 1 0 783809 1 7 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF1 1 12791397 12796628 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF10 1 12892896 12898270 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF11 1 12824605 12831410 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF12 1 12774841 12777906 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF14 1 13342034 13347134 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF15 1 13315581 13322598 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF17 1 13389632 13392629 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF18 1 13222705 13226106 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 3 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF19 1 13369067 13371900 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF2 1 12857086 12861909 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF20 1 13410450 13421328 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF25 1 13068677 13077884 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF26 1 13148905 13155961 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF33 1 13303539 13308907 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 8 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF4 1 12879224 12886201 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF5 1 13254212 13263314 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF6 1 12938472 12947580 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 4 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF7 1 12916610 12920482 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 4 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF8 1 13281035 13285174 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAMEF9 1 13172455 13179464 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRAP1 10 133347146 133352683 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRB1 12 11351823 11395566 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 13 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRB2 12 11391540 11501041 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRB3 12 11265924 11269805 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRB4 12 11307083 11310435 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 5 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRC1 15 90966038 90995629 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRCC 1 156750610 156800817 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRCD 17 76527586 76553578 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRCP 11 82823502 82970584 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 24 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM1 6 106086320 106109939 TRUE 479 2.12789480605958 118 106086435 106115026 0.593481580287395 19 NA 0.593481580287395 19 NA 28591 NA 2 28 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM10 11 129899706 130002835 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 25 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM11 11 45095806 45235110 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 21 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM12 9 130664594 130682981 FALSE 696 -0.58350626283648 28 130285267 130703742 NA 2 NA NA 2 NA 418475 NA 5 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM13 6 99606730 99615578 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM14 8 70051651 70071693 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 10 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM15 21 41798225 41879482 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 36 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM16 1 3069168 3438621 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM2 1 13700198 13825079 FALSE 5 -0.712403245884126 20 12941175 15101486 0.593443012170704 1 0 0.593443012170704 1 0 2160311 1 22 27 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM4 12 107732866 107761272 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM5 4 120684919 120922870 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM6 5 123089121 123194266 FALSE 392 -0.336901155452395 44 122775231 124648866 0.18904974046126 3 NA 0.18904974046126 3 NA 1873635 NA 7 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM7 16 90056566 90092072 FALSE 1132 -0.862602881667713 15 89949513 90075819 0.449390955025597 1 0 0.449390955025597 1 0 126306 1 5 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM8 4 80183879 80204329 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDM9 5 23443586 23528597 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDX1 1 45511036 45523047 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDX2 19 12796820 12801859 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDX3 10 119167703 119178833 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDX4 23 23664262 23686399 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDX5 11 64318088 64321811 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRDX6 1 173477266 173488807 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PREB 2 27130756 27134675 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRELID1 5 177303774 177306959 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRELID2 5 145471799 145835369 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRELID3A 18 12407896 12432238 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRELID3B 20 59033145 59042909 FALSE 1396 -0.20354273420644 52 58981312 59194662 0.426118104232275 3 NA 0.426118104232275 3 NA 213350 NA 6 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRELP 1 203475828 203491352 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PREP 6 105277565 105403084 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PREPL 2 44316281 44361862 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PREX1 20 48624252 48827883 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 44 8 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PREX2 8 67952118 68237030 FALSE 621 0.858841523291664 80 67952039 68217707 0.593481580287395 7 NA 0.593481580287395 7 NA 265668 NA 1 64 22 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRF1 10 70597348 70602775 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRG2 11 57386794 57390657 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRG3 11 57376769 57381150 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRG4 1 186296279 186314562 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 24 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRH1 12 10824960 11171608 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 57 18 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRH1-PRR4 12 10845849 11171600 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 53 18 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRH2 12 10929236 10932341 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRICKLE1 12 42456757 42590355 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRICKLE2 3 64092242 64445476 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRICKLE3 23 49175264 49186528 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRICKLE4 6 41780762 41787372 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRIM1 12 56731596 56752373 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRIM2 6 57314805 57646849 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRIMA1 14 93718298 93788481 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRIMPOL 4 184649613 184694963 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAA1 5 40759379 40798374 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAA2 1 56645322 56715335 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAB1 12 119667753 119681630 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAB2 1 147155106 147172550 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKACA 19 14091688 14118084 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKACB 1 84078062 84238498 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKACG 9 69012529 69014113 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAG1 12 49002274 49018825 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAG2 7 151556111 151877125 FALSE 577 -0.534124150715324 31 151557239 152129931 NA 2 NA NA 2 NA 572692 NA 3 21 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAG3 2 218822383 218832086 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAR1A 17 68511780 68551319 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 45 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAR1B 7 549197 727650 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAR2A 3 48744597 48847846 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKAR2B 7 107044649 107161811 FALSE 554 2.44912760521518 123 106248413 107045189 0.593481580287395 24 NA 0.593481580287395 24 NA 796776 NA 4 12 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCA 17 66302636 66810743 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCB 16 23835946 24220611 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCD 3 53156009 53192717 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCE 2 45651345 46187990 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 16 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCG 19 53879190 53907652 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 19 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCH 14 61187559 61550976 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCI 3 170222365 170305981 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCQ 10 6427143 6580301 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCSH 19 11435288 11450968 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKCZ 1 2050470 2185395 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKD1 14 29576479 30191898 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKD2 19 46674275 46717127 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKD3 2 37250502 37324808 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 20 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKDC 8 47773108 47960183 FALSE 614 0.518796033232449 71 47737362 47959998 0.593481580287395 5 NA 0.593481580287395 5 NA 222636 NA 2 92 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKG1 10 50990891 52298350 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKG2 4 81087370 81215117 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKN 6 161347420 162727771 TRUE 511 0.232361052265423 64 160752984 163562056 0.593443012170704 4 NA 0.593443012170704 4 NA 2809072 NA 6 39 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKRA 2 178431414 178451512 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKRIP1 7 102363872 102426676 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRKX 23 3604370 3713608 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRL 6 22287244 22297501 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRLH 2 237566574 237567175 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRLHR 10 118589989 118595699 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRLR 5 35048756 35230589 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRM1 16 11280836 11281350 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRM2 16 11275639 11276480 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRM3 16 11273218 11273641 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 2 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT1 19 49675786 49689029 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT2 21 46635167 46665124 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT3 11 20387530 20509294 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT5 14 22920511 22929585 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT6 1 107056679 107067636 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT7 16 68310974 68358563 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT8 12 3381349 3593973 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRMT9 4 147637785 147684230 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRND 20 4721910 4728460 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRNP 20 4686236 4701590 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROB1 5 139390592 139395713 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 11 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROC 2 127418427 127429246 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROCA1 17 28703197 28711854 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROCR 20 35172073 35216240 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRODH 22 18912777 18936553 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRODH2 19 35799988 35813299 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROK1 1 110451200 110457354 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROK2 3 71771656 71785206 FALSE 267 -0.951688570929534 11 71684747 71785028 0.593443012170704 1 0 0.593443012170704 1 0 100281 1 4 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROKR1 2 68643589 68658247 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROKR2 20 5302040 5314369 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROM1 4 15963076 16084378 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 27 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROM2 2 95274453 95291308 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROP1 5 177992235 177996242 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROS1 3 93873033 93980003 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROSER1 13 39009866 39038076 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 20 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROSER2 10 11823339 11872277 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROSER3 19 35758143 35771028 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROX1 1 213983181 214041502 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROX2 14 74852871 74871940 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 8 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PROZ 13 113158654 113172383 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF18 10 13586927 13630868 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF19 11 60890730 60906588 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 16 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF3 1 150321476 150353195 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF31 19 54115410 54131719 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF38A 1 52404564 52420839 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF38B 1 108692323 108701803 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF39 14 45084099 45116282 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF4 9 113275343 113292905 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF40A 2 152651593 152717997 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF40B 12 49568218 49644666 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 40 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF4B 6 4021267 4064983 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF6 20 63981135 64033100 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPF8 17 1650629 1684882 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 45 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPH 12 49293252 49298686 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPH2 6 42696600 42722574 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPS1 23 107628424 107651026 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPS1L1 7 18026774 18027863 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPS2 23 12791355 12824222 FALSE 1453 0.0560811560984207 60 12716198 12906707 0.593443012170704 3 NA 0.593443012170704 3 NA 190509 NA 4 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPSAP1 17 76309486 76384521 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRPSAP2 17 18840085 18931287 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR11 17 59155499 59204705 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR12 19 49591643 49626439 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR13 12 53441605 53446645 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR14 16 30650717 30656440 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR14L 22 31676256 31750140 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 30 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR15 7 29563811 29567295 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR15L 17 47951967 47957878 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR16 5 120464278 120687332 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR18 6 166305300 166308448 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR19 19 42302098 42310821 FALSE 1342 -0.424583186963262 37 42297126 42410557 NA 2 NA NA 2 NA 113431 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR22 19 5782960 5784765 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 7 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR23A 3 139005468 139006268 FALSE 290 0.492429452862148 71 138633043 139347013 0.593481580287395 5 NA 0.593481580287395 5 NA 713970 NA 8 4 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR23B 3 139019031 139020926 FALSE 290 0.492429452862148 71 138633043 139347013 0.593481580287395 5 NA 0.593481580287395 5 NA 713970 NA 8 4 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR23C 3 139042102 139044892 FALSE 290 0.492429452862148 71 138633043 139347013 0.593481580287395 5 NA 0.593481580287395 5 NA 713970 NA 8 3 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR23D1 8 7539628 7542450 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 1 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR23D2 8 7778591 7781413 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR26 10 649948 669581 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR27 4 70133616 70176799 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR29 17 63998351 64004304 FALSE 1214 -0.224902535009953 49 63943066 64214199 0.331933131290263 3 NA 0.331933131290263 3 NA 271133 NA 5 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR3 6 30556886 30563723 FALSE 442 -0.707992332207312 21 30547554 30653233 0.328777186374237 1 0 0.328777186374237 1 0 105679 1 8 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR30 2 27136848 27139410 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR32 23 126819764 126821786 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR34 22 46049478 46054144 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR35 16 560422 565528 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR36 19 7868719 7874379 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR4 12 10845849 10849475 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR5 22 44668547 44737681 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR5-ARHGAP8 22 44702233 44862706 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 22 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR5L 11 36296288 36465204 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR7 5 177446445 177456286 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRR9 1 153217584 153219317 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRC1 5 127517609 127555089 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRC2A 6 31620720 31637771 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 41 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRC2B 9 131373636 131500197 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 42 6 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRC2C 1 171485551 171593511 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 48 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRG1 23 37349275 37457295 FALSE 1465 0.0749747101580098 60 36236724 37572322 0.593443012170704 3 NA 0.593443012170704 3 NA 1335598 NA 5 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRG2 19 49580646 49591015 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRG3 23 151695124 151705924 FALSE 1523 0.354095779845526 68 151672691 151744394 0.389403197422789 6 NA 0.389403197422789 6 NA 71703 NA 4 5 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRG4 11 32829943 32858123 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRT1 6 32148359 32153083 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRT2 16 29811382 29815892 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRT3 3 9945542 9952394 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRT4 7 128350325 128361685 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 11 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRX1 1 170662728 170739419 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRRX2 9 129665641 129722674 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS1 7 142749468 142753076 FALSE 569 -0.436854664085822 37 141973117 142749531 NA 2 NA NA 2 NA 776414 NA 6 7 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS12 4 118280038 118353003 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS16 6 27247701 27256624 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS2 7 142760398 142774564 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 8 6 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS21 16 2817180 2826304 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS22 16 2852727 2858170 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS23 11 86791059 86952910 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS27 16 2712418 2720551 FALSE 1075 -1.0134415309646 11 2682644 2760334 0.593443012170704 1 0 0.593443012170704 1 0 77690 1 3 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS3 9 33750466 33799231 FALSE 662 -0.688244417473182 25 33568791 34220857 0.276933305076759 1 0 0.276933305076759 1 0 652066 1 6 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS33 16 2783953 2787948 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS35 6 83512538 83525704 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS36 16 31138925 31150094 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS37 7 141836286 141841487 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS38 1 227815693 227846470 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS41 16 2798485 2805302 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS42 3 46829542 46834095 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS45 3 46742092 46744755 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS48 4 151277171 151291453 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS50 3 46712115 46812574 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 19 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS51 8 10482878 10547585 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS53 16 31083425 31089628 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS54 16 58279997 58295047 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS55 8 10525546 10554166 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS56 2 232520463 232525716 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS57 19 685546 695498 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS58 7 142252143 142258058 FALSE 569 -0.436854664085822 37 141973117 142749531 NA 2 NA NA 2 NA 776414 NA 6 6 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRSS8 16 31131433 31135762 FALSE 1100 1.71931562092966 103 31131264 31135705 0.593481580287395 14 NA 0.593481580287395 14 NA 4441 NA 2 9 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRTFDC1 10 24848607 24952604 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRTG 15 55611546 55743090 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 23 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRTN3 19 840960 848175 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 7 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRUNE1 1 151008420 151035713 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRUNE2 9 76611376 76906087 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 50 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRX 19 40393768 40413366 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRXL2A 10 80407829 80437115 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRXL2B 1 2586491 2591469 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PRXL2C 9 96639577 96655303 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSAP 10 71816298 71851375 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 15 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSAPL1 4 7430294 7434973 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSAT1 9 78297143 78330093 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSCA 8 142670308 142682724 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 3 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSD 10 102402617 102421539 FALSE 739 -0.275378579199856 46 102065679 102502663 0.261157737158964 3 NA 0.261157737158964 3 NA 436984 NA 14 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSD2 5 139795821 139844466 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSD3 8 18527301 19084730 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 22 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSD4 2 113157325 113209396 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 23 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSEN1 14 73136418 73223691 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSEN2 1 226870184 226896105 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 11 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSENEN 19 35745114 35747519 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG1 19 42866464 42879822 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG11 19 43007656 43026512 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG2 19 43064211 43083045 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG3 19 42721638 42740569 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG4 19 43192702 43207299 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG5 19 43166256 43186536 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG6 19 42902079 42919563 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG7 19 42924132 42937178 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG8 19 42752686 42855691 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSG9 19 43211791 43269530 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSIP1 9 15464066 15511019 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSKH1 16 67893272 67929678 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSKH2 8 86048373 86088621 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA1 11 14504874 14643635 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA2 7 42916857 42932223 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA3 14 58244831 58272012 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA4 15 78540405 78552419 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA5 1 109399031 109426427 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA6 14 35278633 35317493 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA7 20 62136735 62143440 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMA8 18 26133852 26193355 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB1 6 170535117 170553341 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB10 16 67934502 67937087 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB11 14 23042167 23044276 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB2 1 35599544 35641844 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB3 17 38752736 38764231 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB4 1 151399534 151401944 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB5 14 23016543 23035230 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB6 17 4796144 4798503 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB7 9 124353466 124415444 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB8 6 32840717 32844703 FALSE 450 -0.672386269912017 25 32822247 32859420 0.276933305076759 1 0 0.276933305076759 1 0 37173 1 5 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMB9 6 32844136 32859585 FALSE 450 -0.672386269912017 25 32822247 32859420 0.276933305076759 1 0 0.276933305076759 1 0 37173 1 5 22 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMC1 14 90256495 90275429 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMC2 7 103344254 103369395 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMC3 11 47418769 47426473 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMC3IP 17 42572315 42577831 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMC4 19 39971005 39981441 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMC5 17 63827152 63832026 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 11 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMC6 14 52707172 52728587 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD1 2 231056864 231172827 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD10 23 108084207 108091618 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD11 17 32444261 32483318 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD12 17 67337916 67366627 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD13 11 236546 252984 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD14 2 161308038 161411717 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD2 3 184298709 184309054 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD3 17 39980797 39997960 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD4 1 151254703 151267479 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD5 9 120815496 120842984 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD6 3 64010549 64024010 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD7 16 74296775 74306288 FALSE 1117 -0.616228908704223 28 73127392 74391401 NA 2 NA NA 2 NA 1264009 NA 3 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD8 19 38374536 38383824 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMD9 12 121888731 121918297 FALSE 927 -0.556106487244151 31 121843771 122003709 NA 2 NA NA 2 NA 159938 NA 4 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSME1 14 24136158 24138967 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSME2 14 24143362 24147570 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSME3 17 42824385 42843758 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSME4 2 53864067 53970840 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 48 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMF1 20 1113263 1189415 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMG1 21 39174769 39183851 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMG2 18 12658043 12725740 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMG3 7 1567330 1571005 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSMG4 6 3231403 3303373 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 11 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSORS1C1 6 31114750 31140092 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 15 6 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSORS1C2 6 31137536 31139350 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSPC1 13 19674752 19783019 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSPH 7 56011051 56051604 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSPN 19 6375148 6379058 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSRC1 1 109279556 109283186 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSTK 10 122954381 122997513 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSTPIP1 15 76993359 77037332 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PSTPIP2 18 45983536 46072272 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTAFR 1 28147166 28193936 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTAR1 9 69709522 69759959 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTBP1 19 797075 812327 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 15 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTBP2 1 96721665 96823738 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTBP3 9 112217716 112333667 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCD1 7 99416739 99466163 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 25 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCD2 5 72320367 72368395 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCD3 2 86106182 86142157 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCH1 9 95442980 95517057 TRUE 683 1.26095330597424 89 95443161 95522088 0.593481580287395 10 NA 0.593481580287395 10 NA 78927 NA 1 61 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCH2 1 44819844 44843063 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCHD1 23 23334016 23404372 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCHD4 6 47878028 48068689 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTCRA 6 42915989 42925835 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTDSS1 8 96261715 96336995 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTDSS2 11 448268 491399 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTEN 10 87863113 87971930 TRUE 732 0.944999331848075 82 87862439 87959983 0.593481580287395 8 NA 0.593481580287395 8 NA 97544 NA 2 51 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTER 10 16436943 16513745 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTF1A 10 23192327 23194252 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGDR 14 52267713 52276724 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGDR2 11 60850940 60855971 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGDS 9 136975092 136981742 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGER1 19 14472466 14475362 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGER2 14 52314305 52328606 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGER3 1 70852353 71047808 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGER4 5 40679498 40693735 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGES 9 129738331 129753047 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGES2 9 128120693 128128462 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGES3 12 56663341 56688408 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGES3L 17 42968088 42980433 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGES3L-AARSD1 17 42950526 42980528 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGFR 1 78303884 78539749 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGFRN 1 116910057 116990358 FALSE 42 -0.448523507205421 37 116388682 117121244 NA 2 NA NA 2 NA 732562 NA 8 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGIR 19 46620468 46625118 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGIS 20 49503874 49568146 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGR1 9 111549722 111599893 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGR2 14 73851844 73886827 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGS1 9 122370530 122395703 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 15 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTGS2 1 186671791 186680427 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTH 11 13492055 13496181 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTH1R 3 46877746 46903799 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTH2 19 49422414 49423441 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTH2R 2 208359714 208854503 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTHLH 12 27958084 27972705 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTK2 8 140657900 141002216 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 36 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTK2B 8 27311482 27459391 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 30 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTK6 20 63528001 63537370 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTK7 6 43076268 43161719 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTMA 2 231706895 231713541 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTMS 12 6765516 6770952 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTN 7 137227341 137343865 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTOV1 19 49850735 49860744 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTP4A1 6 63521746 63583377 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTP4A2 1 31906421 31944856 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTP4A3 8 141391993 141432454 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPA 9 129110950 129148946 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPDC1 9 94030794 94109856 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPMT1 11 47565430 47573461 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN1 20 50510321 50585241 TRUE 1390 0.237645231925785 64 50278335 50572048 0.593443012170704 4 NA 0.593443012170704 4 NA 293713 NA 1 31 4 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN11 12 112418351 112509913 FALSE 915 1.94532626648616 111 112419035 112509967 0.593481580287395 16 NA 0.593481580287395 16 NA 90932 NA 1 32 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN12 7 77537275 77640071 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN13 4 86594315 86815171 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 55 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN14 1 214348696 214552449 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN18 2 130356007 130375409 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN2 18 12785478 12929643 TRUE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN20 10 46911396 47002488 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN21 14 88465778 88554733 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN22 1 113813811 113871759 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN23 3 47381011 47413441 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 31 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN3 9 109375466 109498313 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN4 2 119759631 119983818 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN5 11 18727928 18792721 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN6 12 6946468 6961316 FALSE 839 2.0352581367871 113 6945796 6960843 0.593481580287395 18 NA 0.593481580287395 18 NA 15047 NA 2 17 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN7 1 202147013 202161588 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPN9 15 75463251 75579289 FALSE 1040 -0.419253708499368 37 75468964 75843853 NA 2 NA NA 2 NA 374889 NA 7 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRA 20 2864184 3039076 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 30 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRB 12 70515866 70637440 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 53 7 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRC 1 198638457 198757476 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 34 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRCAP 11 67435510 67438067 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRD 9 8314246 10612723 TRUE 652 0.293645799381693 67 8309327 12695616 0.593443012170704 4 NA 0.593443012170704 4 NA 4386289 NA 2 80 6 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRE 10 127907061 128085855 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRF 1 43525187 43623666 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 42 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRG 3 61561569 62297613 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRH 19 55181248 55209506 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 27 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRJ 11 47980558 48170841 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 32 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRK 6 127968779 128520674 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 39 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRM 18 7566782 8406861 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 37 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRN 2 219289623 219309648 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRN2 7 157539056 158587788 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 27 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRO 12 15322397 15597399 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRQ 12 80402178 80680271 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 53 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRR 12 70638073 70920843 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRS 19 5158495 5340803 TRUE 1282 1.54723037950643 98 5153556 5286337 0.593481580287395 12 NA 0.593481580287395 12 NA 132781 NA 2 56 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRT 20 42072752 43189970 TRUE 1379 2.48690876091819 123 42072806 42084892 0.593481580287395 25 NA 0.593481580287395 25 NA 12086 NA 1 78 13 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRU 1 29236516 29326813 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 39 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTPRZ1 7 121873089 122062036 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 43 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTRH1 9 127690348 127724873 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTRH2 17 59674636 59707626 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 22 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTRHD1 2 24789734 24793382 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTS 11 112226365 112269955 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTTG1 5 160421822 160428744 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTTG1IP 21 44849585 44873903 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTTG2 4 37960435 37961125 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTX3 3 157436789 157443628 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PTX4 16 1485886 1488981 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 8 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUDP 23 7048920 7148190 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUF60 8 143816344 143829859 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUM1 1 30931506 31065991 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 24 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUM2 2 20248691 20352234 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUM3 9 2720469 2844241 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PURA 5 140107777 140125619 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PURB 7 44876293 44885361 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PURG 8 30995802 31033715 FALSE 593 -0.569215856915978 31 30836864 31157461 NA 2 NA NA 2 NA 320597 NA 3 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUS1 12 131929200 131945896 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUS10 2 60940222 61018259 FALSE 142 -0.73704227505101 21 60942397 61470646 0.328777186374237 1 0 0.328777186374237 1 0 528249 1 5 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUS3 11 125893485 125903221 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUS7 7 105439661 105522267 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUS7L 12 43718993 43758817 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PUSL1 1 1308567 1311677 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PVALB 22 36800684 36819479 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PVALEF 17 81165507 81183164 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PVR 19 44643798 44663583 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PVRIG 7 100218241 100221490 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PWP1 12 107685732 107713167 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PWP2 21 44107290 44131181 FALSE 1410 0.248050459668393 64 44079672 44230074 0.593443012170704 4 NA 0.593443012170704 4 NA 150402 NA 4 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PWWP2A 5 160061801 160119423 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PWWP2B 10 132397168 132417863 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXDC1 6 3722614 3752026 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXDN 2 1631887 1744852 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXDNL 8 51319578 51809445 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXK 3 58332880 58426126 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 21 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXMP2 12 132687606 132704991 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXMP4 20 33702754 33720319 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXN 12 120210439 120265771 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXT1 6 36390551 36442889 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PXYLP1 3 141228726 141367753 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYCARD 16 31201485 31203450 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYCR1 17 81932384 81942412 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYCR2 1 225919877 225924340 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYCR3 8 143603913 143609773 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYDC1 16 31215962 31217359 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYDC2 3 191461163 191461456 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 2 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYGB 20 25248069 25298014 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 22 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYGL 14 50857891 50944736 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYGM 11 64746389 64760297 FALSE 788 -0.567376751383287 31 64559137 64803166 NA 2 NA NA 2 NA 244029 NA 7 19 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYGO1 15 55538890 55588947 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYGO2 1 154957026 154963853 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYHIN1 1 158930796 158977054 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYM1 12 55901413 55932618 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYROXD1 12 21437615 21471252 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 21 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYROXD2 10 98383565 98415184 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYURF 4 88520985 88523813 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PYY 17 43952738 44004469 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 PZP 12 9148840 9208370 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 36 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QARS 3 49095932 49105135 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QDPR 4 17460261 17512234 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QKI 6 163414000 163578596 FALSE 511 0.232361052265423 64 160752984 163562056 0.593443012170704 4 NA 0.593443012170704 4 NA 2809072 NA 6 61 6 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QPCT 2 37342827 37373322 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QPCTL 19 45692483 45703989 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QPRT 16 29679008 29698699 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QRFP 9 130892702 130896812 FALSE 698 -0.692803749032214 25 130893485 131120247 0.276933305076759 1 0 0.276933305076759 1 0 226762 1 4 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QRFPR 4 121329312 121381059 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QRICH1 3 49029707 49094363 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QRICH2 17 76274049 76307998 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 32 5 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QRSL1 6 106629578 106668417 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 11 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QSER1 11 32892820 32993316 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QSOX1 1 180154834 180204030 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QSOX2 9 136206333 136245841 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QTRT1 19 10701430 10713437 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 QTRT2 3 114005833 114088422 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 R3HCC1 8 23270120 23296279 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 R3HCC1L 10 98134624 98244897 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 R3HDM1 2 135531455 135725270 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 R3HDM2 12 57253762 57431005 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 26 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 R3HDM4 19 896503 913245 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 8 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 R3HDML 20 44336986 44351235 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB10 2 26034107 26137454 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB11A 15 65726054 65891991 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB11B 19 8389981 8404434 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB11FIP1 8 37858618 37899467 FALSE 604 -0.624839683007019 28 37845100 37872429 NA 2 NA NA 2 NA 27329 NA 2 18 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB11FIP2 10 118004916 118046603 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB11FIP3 16 425619 523011 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB11FIP4 17 31391624 31538217 FALSE 1163 -0.787469030098252 18 31391904 31901587 0.387809979850725 1 0 0.387809979850725 1 0 509683 1 3 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB11FIP5 2 73073382 73156721 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB12 18 8609437 8639382 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB13 1 153981617 153986358 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB14 9 121178137 121223014 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB15 14 64945814 64973226 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB17 2 237574322 237601614 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB18 10 27504174 27542237 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB19 7 140404043 140426250 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB1A 2 65070696 65130331 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB1B 11 66268533 66277492 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB20 13 110523066 110561733 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB21 12 71754874 71800285 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB22A 20 58309696 58367507 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB23 6 57186992 57222314 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB24 5 177301198 177303744 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB25 1 156061160 156070514 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB26 16 2140803 2154165 FALSE 1070 -0.371718129314342 41 2090536 2165976 NA 2 NA NA 2 NA 75440 NA 3 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB27A 15 55202966 55319113 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB27B 18 54717860 54895516 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB28 4 13361354 13484365 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB29 1 205767986 205775460 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB2A 8 60516857 60623627 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB2B 14 21459020 21476973 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 8 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB30 11 82973133 83071923 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB31 18 9708165 9862551 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB32 6 146543693 146554965 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB33A 23 130171649 130184870 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB33B 4 139453232 139476609 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB34 17 28714281 28718429 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB35 12 120095095 120117502 FALSE 921 2.42265153777888 123 120095133 120103793 0.593481580287395 23 NA 0.593481580287395 23 NA 8660 NA 1 14 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB36 22 23145326 23164350 FALSE 1422 -1.11892841169056 7 23059635 23161569 0.593443012170704 1 0 0.593443012170704 1 0 101934 1 3 12 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB37 17 74670578 74747335 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB38 11 88113242 88175467 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB39A 11 107928503 107963482 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB39B 23 155258241 155264589 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3A 19 18196784 18204074 FALSE 1320 -0.249880581547498 49 18177171 18281093 0.331933131290263 3 NA 0.331933131290263 3 NA 103922 NA 9 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3B 1 51907956 51990764 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3C 5 58582221 58859394 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3D 19 11322046 11346270 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3GAP1 2 135052265 135176394 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3GAP2 1 220148293 220272454 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 37 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3IL1 11 61897301 61920269 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB3IP 12 69738681 69823204 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB40A 23 103499130 103519489 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB40AL 23 102937272 102938300 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB40B 17 82654973 82698728 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB40C 16 589357 629272 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB41 23 70282093 70285002 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB42 1 28592200 28595443 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB43 3 129087569 129122801 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB44 6 36697810 36733183 FALSE 461 1.70702245252059 103 36678783 36715518 0.593481580287395 14 NA 0.593481580287395 14 NA 36735 NA 2 18 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB4A 1 229271062 229305894 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB4B 19 40778216 40796938 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB4B-EGLN2 19 40778242 40808418 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB5A 3 19947079 19985175 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB5B 12 55973913 55996683 FALSE 884 -0.87328128400006 13 55986964 56074489 0.522719719214577 1 0 0.522719719214577 1 0 87525 1 4 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB5C 17 42124976 42155044 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB5IF 20 36605734 36612557 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB6A 11 73675638 73761137 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB6B 3 133824239 133895836 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB6C 2 129979664 129982738 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB6D 2 131361111 131364142 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB7A 3 128726122 128814796 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB8A 19 16111629 16134234 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB8B 15 63189469 63267782 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB9A 23 13689125 13710506 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAB9B 23 103822322 103832228 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABAC1 19 41956681 41959390 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 6 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABEP1 17 5282265 5385812 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABEP2 16 28904421 28936526 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 22 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABEPK 9 125200542 125234158 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABGAP1 9 122940833 123104866 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 30 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABGAP1L 1 174159410 174995308 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 34 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABGEF1 7 66682164 66811464 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABGGTA 14 24265538 24271739 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABGGTB 1 75786197 75795079 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABIF 1 202878957 202889135 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABL2A 2 113627229 113643396 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABL2B 22 50767501 50783663 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABL3 3 120686681 120742993 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RABL6 9 136807943 136841187 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAC1 7 6374523 6403977 FALSE 520 -0.273341933736742 46 6006303 6387310 0.261157737158964 3 NA 0.261157737158964 3 NA 381007 NA 8 13 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAC2 22 37225261 37244448 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAC3 17 82031624 82034204 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RACGAP1 12 49976923 50033136 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RACK1 5 181236909 181248096 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD1 5 34905264 34918989 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD17 5 69369293 69414801 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD18 3 8775402 8963773 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD21 8 116845935 116874866 TRUE 633 1.46196210036438 95 116771675 116874783 0.593481580287395 11 NA 0.593481580287395 11 NA 103108 NA 2 29 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD21L1 20 1226056 1296421 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD23A 19 12945855 12953642 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD23B 9 107283137 107332194 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD50 5 132556019 132646344 TRUE 395 1.22265642557996 87 132446704 132658234 0.593481580287395 9 NA 0.593481580287395 9 NA 211530 NA 5 56 4 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD51 15 40694774 40732339 TRUE 1011 0.874388432684245 80 40695135 40732310 0.593481580287395 7 NA 0.593481580287395 7 NA 37175 NA 2 22 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD51AP1 12 4538798 4560048 FALSE 833 -0.68736665441209 25 4489833 4810101 0.276933305076759 1 0 0.276933305076759 1 0 320268 1 9 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD51AP2 2 17510584 17518439 FALSE 113 -0.742826346277415 18 16552911 17753891 0.387809979850725 1 0 0.387809979850725 1 0 1200980 1 5 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD51B 14 67819779 68730218 TRUE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 39 4 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD51C 17 58692573 58735611 TRUE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 21 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD51D 17 35092208 35121522 TRUE 1166 1.63972252343896 100 35021589 35119816 0.593481580287395 13 NA 0.593481580287395 13 NA 98227 NA 3 42 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD51L3-RFFL 17 35011349 35121493 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 50 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD52 12 912077 990053 FALSE 830 1.25748535943082 89 912147 1083403 0.593481580287395 10 NA 0.593481580287395 10 NA 171256 NA 2 21 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD54B 8 94371960 94475109 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 21 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD54L 1 46247688 46278473 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD54L2 3 51541144 51668667 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD9A 11 67317871 67398410 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAD9B 12 110501655 110532086 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RADIL 7 4797055 4883719 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAE1 20 57351010 57379211 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAET1E 6 149883375 149898102 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAET1G 6 149916878 149923121 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAET1L 6 150018334 150025532 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAF1 3 12583601 12664226 FALSE 239 0.943865995244769 82 12581839 12664163 0.593481580287395 8 NA 0.593481580287395 8 NA 82324 NA 2 82 13 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAG1 11 36510709 36593156 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAG2 11 36575574 36598279 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAI1 17 17681473 17811453 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAI14 5 34656237 34832627 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAI2 23 17800049 17861337 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALA 7 39623483 39708124 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALB 2 120240064 120294713 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALBP1 18 9475009 9538116 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALGAPA1 14 35538352 35809304 FALSE 972 -0.135983194539659 52 35406876 36513087 0.426118104232275 3 NA 0.426118104232275 3 NA 1106211 NA 5 53 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALGAPA2 20 20389552 20712488 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 42 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALGAPB 20 38472816 38578861 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALGDS 9 133097720 133149334 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALGPS1 9 126914774 127223166 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALGPS2 1 178725147 178921841 FALSE 71 -0.473468583840393 37 177944644 179094120 NA 2 NA NA 2 NA 1149476 NA 8 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALY 20 33993646 34108308 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RALYL 8 84182787 84921844 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAMAC 15 82986207 82991057 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAMP1 2 237858893 237912114 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAMP2 17 42758447 42763041 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAMP3 7 45157791 45186302 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAN 12 130871879 130877678 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP1 22 20115938 20127357 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP10 16 67723066 67806652 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP17 5 170861870 171300015 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP2 2 108719481 108785811 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 60 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP3 19 5916139 5978142 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP3L 5 36248434 36302114 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 16 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP6 9 6011043 6015625 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANBP9 6 13621498 13711564 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANGAP1 22 41245611 41286251 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RANGRF 17 8288497 8290092 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP1A 1 111542218 111716691 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP1B 12 68610839 68671901 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP1GAP 1 21596215 21669363 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 27 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP1GAP2 17 2755705 3037739 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 25 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP1GDS1 4 98261384 98443861 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP2A 13 97434222 97469128 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP2B 3 153162270 153170620 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAP2C 23 132203024 132219480 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPGEF1 9 131576770 131740074 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 30 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPGEF2 4 159103013 159360174 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 37 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPGEF3 12 47734367 47771040 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPGEF4 2 172735274 173052893 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 32 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPGEF5 7 22118238 22357144 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPGEF6 5 131423921 131635236 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 37 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPGEFL1 17 40177010 40195656 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPH1 2 203394345 203535410 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 32 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAPSN 11 47437757 47449178 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARA 17 40309192 40357643 FALSE 1179 2.17415583368259 118 40303144 40347920 0.593481580287395 20 NA 0.593481580287395 20 NA 44776 NA 2 69 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARB 3 25174332 25597932 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARG 12 53210567 53232980 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARRES1 3 158696892 158732696 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARRES2 7 150338317 150341674 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARRES3 11 63536809 63546462 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARS 5 168486445 168519299 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 16 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RARS2 6 87514378 87590003 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 20 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASA1 5 87267888 87391931 TRUE 387 0.548749345456998 71 87268048 87391832 0.593481580287395 5 NA 0.593481580287395 5 NA 123784 NA 2 45 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASA2 3 141487047 141615342 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASA3 13 113977783 114132611 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASA4 7 102573807 102616757 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 7 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASA4B 7 102482445 102517781 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASAL1 12 113098819 113136239 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASAL2 1 178094141 178484147 FALSE 71 -0.473468583840393 37 177944644 179094120 NA 2 NA NA 2 NA 1149476 NA 8 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASAL3 19 15451624 15464571 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASD1 17 17494437 17496395 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASD2 22 35540868 35554001 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASEF 9 82979585 83063177 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGEF1A 10 43194535 43266919 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGEF1B 4 81426393 82044244 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGEF1C 5 180100791 180209153 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGRF1 15 78959947 79090773 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 32 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGRF2 5 80960672 81230156 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGRP1 15 38488103 38565575 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGRP2 11 64726911 64745456 FALSE 788 -0.567376751383287 31 64559137 64803166 NA 2 NA NA 2 NA 244029 NA 7 17 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGRP3 2 33436324 33564750 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASGRP4 19 38409051 38426305 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASIP1 19 48720587 48740721 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASL10A 22 29312933 29319679 FALSE 1431 -0.769259292267371 18 29308534 29642163 0.387809979850725 1 0 0.387809979850725 1 0 333629 1 8 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASL10B 17 35731649 35743521 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASL11A 13 27270327 27273690 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASL11B 4 52862290 52866835 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASL12 15 65053337 65076690 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF1 3 50329782 50340980 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF10 11 13009577 13012106 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 7 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF2 20 4780023 4823645 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF3 12 64507001 64697567 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF4 10 44959407 44995891 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF5 1 206507530 206589448 FALSE 89 -0.761407466237176 18 206507816 206636903 0.387809979850725 1 0 0.387809979850725 1 0 129087 1 3 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF6 4 73571550 73620631 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 12 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF7 11 560404 564021 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF8 12 25959029 26079892 FALSE 860 -0.331371321454595 44 25251971 26556343 0.18904974046126 3 NA 0.18904974046126 3 NA 1304372 NA 5 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RASSF9 12 85800697 85836570 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAVER1 19 10316212 10333640 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAVER2 1 64745095 64833232 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAX 18 59267035 59274086 FALSE 1261 -0.626771039159971 28 58934445 59897059 NA 2 NA NA 2 NA 962614 NA 7 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RAX2 19 3769089 3772221 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RB1 13 48303726 48599436 TRUE 946 1.34209374094336 90 48298831 48481842 0.593481580287395 10 NA 0.593481580287395 10 NA 183011 NA 2 65 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RB1CC1 8 52622456 52745843 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 31 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBAK 7 5045821 5069488 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 11 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBAK-RBAKDN 7 4983718 5073221 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 12 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBBP4 1 32651142 32686211 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBBP5 1 205086142 205122015 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBBP6 16 24537693 24572863 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 32 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBBP7 23 16839283 16870414 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 16 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBBP8 18 22798261 23026488 FALSE 1246 0.0116107808951413 58 22415607 22993572 0.387728048050399 4 NA 0.387728048050399 4 NA 577965 NA 2 21 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBBP8NL 20 62410237 62427533 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 16 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBBP9 20 18486540 18497243 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBCK1 20 407498 430966 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBFA 18 80034358 80046397 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBFOX1 16 5239802 7713338 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 20 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBFOX2 22 35738736 36028425 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBFOX3 17 79089345 79516148 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBKS 2 27781364 27891098 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBL1 20 36996349 37095995 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBL2 16 53433977 53491649 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM10 23 47144869 47186813 TRUE 1473 0.743170439744717 77 47028074 47191894 0.593481580287395 6 NA 0.593481580287395 6 NA 163820 NA 5 32 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM11 21 14216130 14228372 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM12 20 35648925 35664956 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM12B 8 93729356 93741017 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM14 11 66616582 66627347 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM14-RBM4 11 66616626 66646469 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM15 1 110338506 110346681 TRUE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM15B 3 51391268 51397908 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM17 10 6088987 6117457 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM18 9 122237624 122264839 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM19 12 113816738 113966371 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM20 10 110644397 110839469 FALSE 743 0.494705480005172 71 110562779 110821845 0.593481580287395 5 NA 0.593481580287395 5 NA 259066 NA 2 22 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM22 5 150690794 150701107 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM23 14 22893206 22919184 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM24 6 17281346 17293875 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM25 14 73058436 73123898 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM26 13 79311824 79406477 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM27 5 146203600 146289132 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM28 7 128297685 128343908 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 20 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM3 23 48574449 48579066 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 5 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM33 7 155644451 155781485 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 26 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM34 1 235131183 235161457 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM38 20 57391407 57409333 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM39 20 35701347 35742312 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM4 11 66638617 66668374 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM41 23 107064420 107118823 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM42 19 35629030 35637686 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM43 2 151247940 151261879 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM44 2 237798389 237842808 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM45 2 178112424 178139011 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM46 4 154781213 154828813 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM47 4 40423267 40630875 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM48 7 92528773 92538005 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM4B 11 66664998 66677921 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM5 3 50088908 50119021 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM6 3 49940007 50100045 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM7 11 114400030 114414203 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBM8A 1 145917714 145927678 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMS1 2 160272151 160493794 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMS2 12 56521929 56596196 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMS3 3 28574791 30010391 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMX 23 136848004 136880764 FALSE 1519 0.0708401583431336 60 136780801 138711057 0.593443012170704 3 NA 0.593443012170704 3 NA 1930256 NA 5 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMX2 23 130401969 130413343 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMXL1 1 88979456 88992960 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMXL2 11 7089027 7090900 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBMXL3 23 115189427 115192868 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 12 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBP1 3 139517434 139539829 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBP2 3 139452884 139480747 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBP3 10 47348371 47357875 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBP4 10 93591687 93601744 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBP5 12 7123684 7128942 FALSE 840 -0.249256344321412 49 6965661 7318084 0.331933131290263 3 NA 0.331933131290263 3 NA 352423 NA 10 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBP7 1 9997206 10016020 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBPJ 4 26163455 26435131 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBPJL 20 45306851 45317824 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBPMS 8 30384479 30572261 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBPMS2 15 64739892 64775587 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBSN 3 15070073 15099163 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RBX1 22 40951347 40973309 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RC3H1 1 173931214 174022297 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RC3H2 9 122844556 122905341 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCAN1 21 34513142 34615142 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCAN2 6 46220736 46491972 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCAN3 1 24502351 24541040 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCBTB1 13 49531946 49585583 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCBTB2 13 48488959 48533256 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCC1 1 28505943 28539300 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCC1L 7 75027122 75074228 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCC2 1 17406760 17439724 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCCD1 15 90954870 90963125 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCE1 11 66842835 66846546 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCHY1 4 75479037 75514764 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCL1 9 4792869 4885917 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCN1 11 32090904 32105755 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCN2 15 76931619 76954392 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCN3 19 49527618 49546962 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCOR1 14 102592661 102730576 FALSE 996 -0.579401018683582 31 102193509 102726551 NA 2 NA NA 2 NA 533042 NA 7 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCOR2 11 63911221 63916844 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCOR3 1 211258377 211316385 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCSD1 1 167630093 167706249 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RCVRN 17 9896320 9905621 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RD3 1 211476522 211492917 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RD3L 14 103940426 103942561 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH10 8 73294612 73325281 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH11 14 67676801 67695814 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH12 14 67701886 67734452 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH13 19 55039108 55071291 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH14 2 18554723 18560680 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH16 12 56951431 56959374 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH5 12 55720367 55724705 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDH8 19 10013249 10022279 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDM1 17 35918066 35930773 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RDX 11 109864295 110296722 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 28 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REC114 15 73443158 73560014 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REC8 14 24171853 24180257 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RECK 9 36036433 36124451 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RECQL 12 21468911 21501669 TRUE 857 1.10800512088623 84 21464006 21506995 0.593481580287395 9 NA 0.593481580287395 9 NA 42989 NA 3 31 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RECQL4 8 144511288 144517845 TRUE 639 1.6751165189714 102 144511014 144517495 0.593481580287395 13 NA 0.593481580287395 13 NA 6481 NA 2 25 8 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RECQL5 17 75626845 75667189 FALSE 1229 -0.166870124513272 52 75622079 75765208 0.426118104232275 3 NA 0.426118104232275 3 NA 143129 NA 7 27 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REELD1 4 146214515 146230878 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REEP1 2 86213993 86338083 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REEP2 5 138439017 138446969 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REEP3 10 63521363 63625123 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REEP4 8 22138020 22141951 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REEP5 5 112876379 112922539 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REEP6 19 1490747 1497927 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REG1A 2 79120362 79123419 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REG1B 2 79085030 79088019 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REG3A 2 79157003 79159753 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REG3G 2 79025686 79028505 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REG4 1 119794018 119811660 FALSE 48 -0.842352747885532 15 119623366 119906598 0.449390955025597 1 0 0.449390955025597 1 0 283232 1 5 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REL 2 60881521 60931610 FALSE 141 2.15435191744966 118 60881694 60931617 0.593481580287395 19 NA 0.593481580287395 19 NA 49923 NA 1 40 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RELA 11 65653596 65663094 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RELB 19 45001430 45038198 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RELCH 18 62187255 62310217 FALSE 1263 -0.646518978860434 22 61490571 62978355 1 2 1 1 2 1 1487784 1 7 34 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RELL1 4 37590800 37686376 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RELL2 5 141636950 141641077 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RELN 7 103471784 103989516 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 69 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RELT 11 73376264 73397474 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REM1 20 31475293 31484905 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REM2 14 22883165 22887686 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REN 1 204154819 204190324 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RENBP 23 153935263 153944691 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REP15 12 27696519 27697596 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REPIN1 7 150368189 150374044 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REPS1 6 138903493 138988261 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 20 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REPS2 23 16946691 17153280 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RER1 1 2391775 2405444 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RERE 1 8352397 8817643 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 30 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RERG 12 15107783 15348675 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RERGL 12 18080869 18320107 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 17 4 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RESP18 2 219327409 219333177 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REST 4 56907876 56966678 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RET 10 43077027 43130351 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 66 4 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RETN 19 7669044 7670454 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RETNLB 3 108743424 108757384 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RETREG1 5 16473038 16617058 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RETREG2 2 219176225 219185479 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RETREG3 17 42579513 42610623 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RETSAT 2 85342088 85354620 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REV1 2 99400475 99490035 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REV3L 6 111299028 111483715 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 56 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REX1BD 19 18588685 18592336 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REXO1 19 1815246 1848463 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 23 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REXO2 11 114439386 114450279 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REXO4 9 133406059 133418096 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 REXO5 16 20806429 20849668 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFC1 4 39287456 39366375 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFC2 7 74231499 74254458 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFC3 13 33818049 33966558 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFC4 3 186789880 186807058 FALSE 311 1.51298986797314 98 186783424 186790177 0.593481580287395 12 NA 0.593481580287395 12 NA 6753 NA 2 10 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFC5 12 118013588 118033130 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFESD 5 95646754 95684773 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFFL 17 35005990 35089319 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 7 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFK 9 76385517 76394517 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFLNA 12 123973241 124316024 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFLNB 17 439978 445939 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFNG 17 82047902 82051831 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 8 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFPL1 22 29438583 29442455 FALSE 1431 -0.769259292267371 18 29308534 29642163 0.387809979850725 1 0 0.387809979850725 1 0 333629 1 8 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFPL2 22 32190435 32203477 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 7 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFPL3 22 32354885 32361161 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFPL4A 19 55759014 55763175 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFPL4AL1 19 55769141 55773179 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFPL4B 6 112347330 112351296 FALSE 482 -0.684947044489322 25 112071952 113860176 0.276933305076759 1 0 0.276933305076759 1 0 1788224 1 6 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFT1 3 53088483 53130462 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFTN1 3 16313574 16514026 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFTN2 2 197568224 197676045 FALSE 201 -0.759107324431634 18 197436043 197785973 0.387809979850725 1 0 0.387809979850725 1 0 349930 1 8 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFWD3 16 74621394 74666881 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX1 19 13961538 14007039 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX2 19 5993164 6199572 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX3 9 3218297 3526004 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX4 12 106582907 106762803 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX5 1 151340640 151347357 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX6 6 116877212 116932163 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 22 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX7 15 56087280 56243266 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFX8 2 101397361 101474703 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFXANK 19 19192229 19201869 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RFXAP 13 36819224 36829104 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGCC 13 41457559 41470882 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGL1 1 183636085 183928531 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGL2 6 33291654 33299324 FALSE 457 -0.585863588832874 28 33264074 33313388 NA 2 NA NA 2 NA 49314 NA 7 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGL3 19 11384341 11419342 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGL4 22 23688136 23699176 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGMA 15 93035273 93089204 FALSE 1058 1.4078319488902 93 92900318 93052532 0.593481580287395 11 NA 0.593481580287395 11 NA 152214 NA 3 9 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGMB 5 98768650 98798643 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGN 23 47078355 47093314 FALSE 1473 0.743170439744717 77 47028074 47191894 0.593481580287395 6 NA 0.593481580287395 6 NA 163820 NA 5 6 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGP1 9 35749287 35758575 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGPD1 2 86907953 87013976 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGPD2 2 87755955 87825952 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGPD3 2 106391290 106468376 FALSE 161 0.367062812025417 68 106405181 106436568 0.389403197422789 6 NA 0.389403197422789 6 NA 31387 NA 1 27 5 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGPD4 2 107826937 107890841 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 28 13 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGPD6 2 110513812 110577185 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGPD8 2 112370092 112434488 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 16 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGR 10 84245053 84259960 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS1 1 192575727 192580031 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS10 10 119499828 119542708 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS11 16 268301 275980 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS12 4 3293028 3439913 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 28 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS13 1 192636138 192660306 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS14 5 177357837 177372601 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS16 1 182598623 182604408 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS17 6 153004459 153131249 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS18 1 192158457 192185815 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS19 20 64073181 64079988 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS2 1 192809039 192812283 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS20 8 53851808 53959303 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS21 1 192316992 192367285 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS22 8 99960936 100131268 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 30 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS3 9 113444731 113597743 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 34 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS4 1 163068775 163076802 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS5 1 163111121 163321791 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS6 14 71932439 72566529 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 18 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS7 1 240775515 241357230 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS7BP 5 64506257 64612312 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS8 1 182641816 182684576 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS9 17 65100812 65227703 FALSE 1218 -0.768524137055646 18 65137615 65227292 0.387809979850725 1 0 0.387809979850725 1 0 89677 1 1 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGS9BP 19 32675407 32678300 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RGSL1 1 182409192 182560599 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHAG 6 49605158 49636884 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDD1 2 226835581 226999215 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDD2 7 75842602 75888926 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDD3 22 29259852 29268209 FALSE 1429 -0.86803144327003 13 29058821 29265673 0.522719719214577 1 0 0.522719719214577 1 0 206852 1 4 9 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDF1 16 58059 76355 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDF2 17 76470891 76501790 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDL1 16 675666 678268 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDL2 1 38885807 38941799 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBDL3 17 32266176 32324661 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHBG 1 156369212 156385219 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 10 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHCE 1 25362249 25430192 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHCG 15 89471398 89496613 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHD 1 25272393 25330445 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHEB 7 151466012 151520120 FALSE 576 1.95005499300637 111 151466107 151520039 0.593481580287395 17 NA 0.593481580287395 17 NA 53932 NA 1 14 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHEBL1 12 49064685 49070025 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHEX 1 206052723 206102459 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHNO1 12 2876258 2889523 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHO 3 129528640 129535169 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOA 3 49359145 49412998 FALSE 253 1.40394245806866 93 49359191 49412657 0.593481580287395 11 NA 0.593481580287395 11 NA 53466 NA 2 16 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOB 2 20447074 20449445 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOBTB1 10 60869438 61001440 FALSE 720 -0.594104068900525 28 60871546 61896774 NA 2 NA NA 2 NA 1025228 NA 3 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOBTB2 8 22987417 23020199 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOBTB3 5 95713522 95824383 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOC 1 112701106 112707434 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOD 11 67056818 67072013 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOF 12 121777754 121803403 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOG 11 3826978 3840983 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOH 4 40191053 40246967 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOJ 14 63204114 63293219 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOQ 2 46541806 46583121 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOT1 17 32142454 32253374 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 21 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOT2 16 668086 674174 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 16 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOU 1 228735077 228746669 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOV 15 40872214 40874289 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOXF1 23 120109053 120115937 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOXF2 23 120158561 120165630 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHOXF2B 23 120070672 120077705 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHPN1 8 143368887 143384220 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 15 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RHPN2 19 32978593 33064888 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIBC1 23 53422690 53431120 FALSE 1484 1.28507222603282 90 53380084 53428411 0.593481580287395 10 NA 0.593481580287395 10 NA 48327 NA 2 9 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIBC2 22 45413691 45432496 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIC1 9 5629025 5776557 FALSE 650 1.81115561137557 107 5449869 5629487 0.593481580287395 15 NA 0.593481580287395 15 NA 179618 NA 3 30 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIC3 11 8106093 8169055 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 10 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIC8A 11 207511 215113 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIC8B 12 106774595 106889316 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RICTOR 5 38937919 39074408 FALSE 373 1.30644925900251 90 38932472 39074390 0.593481580287395 10 NA 0.593481580287395 10 NA 141918 NA 2 60 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIDA 8 98102344 98117241 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIF1 2 151409883 151508013 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 68 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIIAD1 1 151710433 151729805 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RILP 17 1646145 1650077 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RILPL1 12 123470054 123533718 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RILPL2 12 123410683 123436717 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMBP2 12 130396137 130716281 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMBP3 22 18605815 18611919 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMBP3B 22 21383374 21389478 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMKLA 1 42380795 42422578 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMKLB 12 8681600 8783095 FALSE 844 -0.893379754099716 13 8456147 8919848 0.522719719214577 1 0 0.522719719214577 1 0 463701 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMS1 6 71886703 72403143 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 45 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMS2 8 103500748 104256094 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 44 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMS3 1 40620679 40665657 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIMS4 20 44751808 44810338 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIN1 11 66330242 66336840 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIN2 20 19757606 20002459 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIN3 14 92513774 92688994 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RING1 6 33208495 33212722 FALSE 456 -0.636119947778167 28 33164464 33263766 NA 2 NA NA 2 NA 99302 NA 6 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RINL 19 38867834 38878279 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RINT1 7 105532085 105567677 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 18 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIOK1 6 7389496 7418037 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIOK2 5 97160867 97183260 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIOK3 18 23452823 23486603 FALSE 1247 -0.841548999761881 15 22993758 23462969 0.449390955025597 1 0 0.449390955025597 1 0 469211 1 4 13 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIOX1 14 73490964 73493392 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIOX2 3 97941818 97972457 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 12 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPK1 6 3063991 3115187 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPK2 8 89757747 89791063 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPK3 14 24336021 24340045 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPK4 21 41739369 41767106 FALSE 1408 1.78555582085315 107 41507982 41741571 0.593481580287395 15 NA 0.593481580287395 15 NA 233589 NA 3 14 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPOR1 16 67518418 67546788 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 27 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPOR2 6 24804281 25042170 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 31 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPOR3 20 50586108 50691528 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 25 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPPLY1 23 106900063 106903335 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPPLY2 6 83853266 83857515 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIPPLY3 21 37006150 37019659 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIT1 1 155897808 155911404 FALSE 61 1.55690746223188 98 155881341 155911373 0.593481580287395 12 NA 0.593481580287395 12 NA 30032 NA 2 17 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RIT2 18 42743227 43115691 FALSE 1253 -0.472157265681454 37 42085793 43277209 NA 2 NA NA 2 NA 1191416 NA 3 6 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RITA1 12 113185526 113192368 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RLBP1 15 89209869 89221751 FALSE 1049 -0.72399199841262 19 88459763 89219004 0.593443012170704 1 0 0.593443012170704 1 0 759241 1 11 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RLF 1 40161373 40240921 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 26 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RLIM 23 74585217 74614617 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RLN1 9 5334969 5339873 FALSE 649 -0.743244922243354 18 5164015 5447729 0.387809979850725 1 0 0.387809979850725 1 0 283714 1 5 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RLN2 9 5299868 5304969 FALSE 649 -0.743244922243354 18 5164015 5447729 0.387809979850725 1 0 0.387809979850725 1 0 283714 1 5 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RLN3 19 14028148 14031042 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMC1 18 23503470 23531807 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMDN1 8 86468257 86514357 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMDN2 2 37923187 38067142 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMDN3 15 40735884 40755851 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMI1 9 83980711 84004074 FALSE 672 1.05573594419498 83 83968286 84001903 0.593481580287395 8 NA 0.593481580287395 8 NA 33617 NA 2 8 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMI2 16 11249619 11381662 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 31 8 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMND1 6 151404762 151452181 FALSE 506 -0.933338902263755 13 151405214 151686189 0.522719719214577 1 0 0.522719719214577 1 0 280975 1 4 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMND5A 2 86720173 86778041 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RMND5B 5 178130996 178150565 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE1 14 20801228 20803278 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE10 14 20505537 20511169 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE11 14 20583559 20609884 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE12 14 20590193 20590823 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE13 14 21032820 21034785 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE2 14 20955452 20956436 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE3 14 20891399 20892348 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE4 14 20684100 20701215 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE6 14 20781051 20782467 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE7 14 21042226 21044234 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE8 14 21057822 21058455 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASE9 14 20556093 20560931 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASEH1 2 3544793 3558616 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASEH2A 19 12806556 12815201 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASEH2B 13 50909678 51024120 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASEH2C 11 65714005 65720947 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASEK 17 7012417 7014532 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASEK-C17orf49 17 7012635 7017520 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASEL 1 182573634 182589256 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNASET2 6 166929504 166957191 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RND1 12 48857145 48865898 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RND2 17 43025241 43032036 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RND3 2 150468195 150539011 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF10 12 120533480 120577594 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF103 2 86603393 86623866 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF103-CHMP3 2 86505668 86721122 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF11 1 51236271 51273455 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF111 15 58865175 59097419 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 43 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF112 17 19411125 19417276 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF113A 23 119870475 119871827 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF113B 13 98175785 98177265 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF114 20 49936336 49953892 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF115 1 145738868 145824077 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF121 11 71928701 71997597 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF122 8 33547755 33567125 FALSE 600 -1.17029510777563 6 33372626 36935533 0.593443012170704 1 0 0.593443012170704 1 0 3562907 1 7 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF123 3 49689499 49721529 FALSE 255 1.11896479522952 84 49682329 49689514 0.593481580287395 9 NA 0.593481580287395 9 NA 7185 NA 3 47 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF125 18 32018372 32073213 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF126 19 647526 663277 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 10 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF128 23 106693794 106796993 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF13 3 149812708 149962139 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF130 5 179911651 180072118 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF133 7 122697712 122699156 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF135 17 30968785 30999911 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF138 18 32091855 32131561 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF139 8 124474738 124487914 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 9 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF14 5 141958328 141990291 FALSE 400 -0.366810382510934 41 141574973 142144643 NA 2 NA NA 2 NA 569670 NA 11 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF141 11 10511678 10541230 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF144A 2 6917392 7068286 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF144B 6 18387350 18468874 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF145 5 159157409 159210053 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF146 6 127266610 127288567 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF148 7 122701664 122702967 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF149 2 101271219 101308701 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF150 4 140859807 141212877 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF151 16 1966823 1968975 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF152 18 61808063 61894247 FALSE 1263 -0.646518978860434 22 61490571 62978355 1 2 1 1 2 1 1487784 1 7 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF157 17 76142453 76240373 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 19 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF165 18 46326809 46463140 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF166 16 88696495 88706421 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 6 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF167 17 4940008 4945222 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF168 3 196468783 196503768 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF169 11 74748868 74842413 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF17 13 24764152 24879921 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 38 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF170 8 42849637 42897290 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF175 4 153710125 153760235 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF180 5 64165844 64372869 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF181 2 85595725 85597613 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF182 6 13924446 13980302 FALSE 426 1.84091726184819 107 13814106 14136658 0.593481580287395 15 NA 0.593481580287395 15 NA 322552 NA 3 3 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF183 9 113297093 113303376 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF185 22 31160183 31207019 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF186 1 19814029 19815278 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF187 1 228487061 228495766 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF19A 8 100257060 100336218 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF19B 1 32936445 32964685 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF2 1 185045364 185102608 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF20 9 101533851 101563344 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF207 1 6205475 6221299 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF208 9 137220247 137221581 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF212 4 1056250 1113562 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF212B 14 23185316 23273477 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF213 17 80260866 80398786 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 93 4 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF214 11 117232625 117286445 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF215 22 30368811 30421771 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 32 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF216 7 5620047 5781739 FALSE 519 -0.179912547532896 52 5563734 6005889 0.426118104232275 3 NA 0.426118104232275 3 NA 442155 NA 7 20 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF217 6 124962545 125092633 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF219 13 78614291 78659179 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF220 1 44405194 44651724 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF222 17 8390704 8397826 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF223 1 1070966 1074307 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF224 9 137227271 137229638 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF225 19 58396090 58397079 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF227 17 7913324 7916276 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF24 20 3927309 4015582 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF25 2 218663864 218672411 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF26 11 119334527 119337313 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF31 14 24146683 24160661 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF32 7 156640281 156677130 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF34 12 121400041 121430623 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF38 9 36336396 36487548 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF39 6 30070266 30075887 FALSE 439 -0.82923210363861 15 29953327 30073259 0.449390955025597 1 0 0.449390955025597 1 0 119932 1 3 8 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF4 4 2462220 2625320 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF40 16 30761745 30776307 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF41 12 56202175 56221933 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF43 17 58352500 58417595 TRUE 1204 1.77938232086553 105 58353707 58417537 0.593481580287395 15 NA 0.593481580287395 15 NA 63830 NA 2 39 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF44 5 176526697 176538025 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF5 6 32178354 32180793 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 5 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF6 13 26132115 26222493 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF7 3 141738204 141747560 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNF8 6 37353972 37394738 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNFT1 17 59952240 59964761 FALSE 1208 -0.274405632017478 46 59953065 60500374 0.261157737158964 3 NA 0.261157737158964 3 NA 547309 NA 7 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNFT2 12 116738178 116853631 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNGTT 6 88610272 88963721 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNH1 11 494512 507300 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNLS 10 88273864 88584530 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNMT 18 13726660 13764558 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNPC3 1 103525691 103555239 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNPEP 1 201982372 202006147 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNPEPL1 2 240565804 240581372 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RNPS1 16 2253116 2268412 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROBO1 3 78597240 79767815 TRUE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 38 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROBO2 3 75906695 77649964 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROBO3 11 124865386 124881470 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 33 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROBO4 11 124883691 124898500 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 21 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROCK1 18 20946906 21111851 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROCK2 2 11179761 11348330 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 36 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROGDI 16 4796968 4802950 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROM1 11 62611722 62615120 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROMO1 20 35699272 35700984 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROPN1 3 123968521 123992178 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROPN1B 3 125969144 125983454 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROPN1L 5 10441524 10472029 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROR1 1 63774022 64181498 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROR2 9 91563091 91950162 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 17 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RORA 15 60488284 61229319 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RORB 9 74497365 74693177 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RORC 1 151806071 151831872 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ROS1 6 117288300 117425855 FALSE 486 0.453474702185239 70 117288366 117314223 0.569287299993522 5 NA 0.569287299993522 5 NA 25857 NA 1 148 15 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RP1 8 54509422 54871720 FALSE 617 0.00128330518501094 58 54463154 55950592 0.387728048050399 4 NA 0.387728048050399 4 NA 1487438 NA 5 27 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RP1L1 8 10606349 10712187 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 33 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RP2 23 46836940 46882358 FALSE 1472 -0.741792499922808 18 45151710 47024874 0.387809979850725 1 0 0.387809979850725 1 0 1873164 1 7 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RP9 7 33094797 33109401 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPA1 17 1829702 1900082 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 17 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPA2 1 27891524 27914746 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPA3 7 7636518 7718607 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPA4 23 96883908 96885467 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPAIN 17 5419641 5432876 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPAP1 15 41517176 41544269 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPAP2 1 92298965 92402056 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPAP3 12 47661249 47706061 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 17 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPE 2 210002565 210022259 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPE65 1 68428822 68449959 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPEL1 10 103245887 103248016 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPF1 1 84479259 84497790 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPF2 6 110982015 111028263 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPGR 23 38269163 38327564 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPGRIP1 14 21287939 21351301 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPGRIP1L 16 53598153 53703938 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 29 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPH3A 12 112570380 112898881 FALSE 916 -0.520240205853977 34 112828330 113010457 NA 2 NA NA 2 NA 182127 NA 4 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPH3AL 17 212389 386254 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPIA 2 88691644 88750935 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL10 23 154389955 154409168 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL10A 6 35468408 35470785 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL10L 14 46651010 46651821 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL11 1 23691742 23696835 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL12 9 127447674 127451405 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL13 16 89560657 89566828 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL13A 19 49487554 49492308 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL14 3 40457292 40468587 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL15 3 23916545 23924374 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL17 18 49488453 49492523 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL17-C18orf32 18 49481681 49492479 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL18 19 48615328 48619536 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL18A 19 17859876 17864153 FALSE 1318 -0.547059940466149 31 17859952 18149709 NA 2 NA NA 2 NA 289757 NA 7 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL19 17 39200283 39204732 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL21 13 27251309 27256691 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL22 1 6185020 6209389 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL22L1 3 170864875 170870483 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL23 17 38847865 38853843 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL23A 17 28719393 28724359 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL24 3 101681091 101686782 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL26 17 8377516 8383250 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL26L1 5 172958729 172969771 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL27 17 42998273 43002959 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL27A 11 8682411 8714759 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 19 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL28 19 55385345 55403250 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL29 3 51993522 51995942 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL3 22 39312882 39320389 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL30 8 98024851 98046469 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL31 2 101001715 101024032 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL32 3 12834485 12841588 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL34 4 108620566 108630412 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL35 9 124857880 124861981 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL35A 3 197949980 197956610 FALSE 321 -0.467968190041876 37 197514413 198169785 NA 2 NA NA 2 NA 655372 NA 7 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL36 19 5674947 5691876 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL36A 23 101390824 101396154 FALSE 1498 1.69674197921389 102 101348696 101391051 0.593481580287395 14 NA 0.593481580287395 14 NA 42355 NA 4 6 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL36A-HNRNPH2 23 101391011 101412297 FALSE 1498 1.69674197921389 102 101348696 101391051 0.593481580287395 14 NA 0.593481580287395 14 NA 42355 NA 4 14 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL36AL 14 49618519 49620685 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL37 5 40825262 40835335 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL37A 2 216498189 216579180 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL38 17 74203582 74210655 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL39 23 119786504 119791643 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL39L 3 187120948 187180908 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL3L 16 1943974 1957606 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL4 15 66498015 66524532 FALSE 1032 -0.613130187479146 28 66494532 66716482 NA 2 NA NA 2 NA 221950 NA 5 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL41 12 56116586 56117943 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL5 1 92831983 92841924 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL6 12 112405190 112418838 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL7 8 73290267 73295789 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL7A 9 133348214 133351426 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL7L1 6 42879618 42889925 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL8 8 144789765 144792587 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 5 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPL9 4 39452521 39458949 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPLP0 12 120196686 120201235 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPLP1 15 69452784 69456194 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPLP2 11 809647 812880 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPN1 3 128619970 128681075 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPN2 20 37178410 37241623 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPP14 3 58306247 58324695 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPP21 6 30345131 30346884 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPP25 15 74954416 74957464 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPP25L 9 34610486 34612104 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPP30 10 90871716 90908553 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPP38 10 15097180 15139818 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPP40 6 4994732 5004063 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPRD1A 18 35984387 36067576 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPRD1B 20 38033546 38127780 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPRD2 1 150363091 150476566 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPRM 2 153477338 153478808 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPRML 17 46978156 46979248 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS10 6 34417454 34426125 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS10-NUDT3 6 34284887 34426071 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS11 19 49496365 49499689 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS12 6 132814441 132817564 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS13 11 17074389 17077787 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS14 5 150442635 150449756 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS15 19 1438358 1440494 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS15A 16 18781295 18790383 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS16 19 39433207 39435948 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS17 15 82536750 82540564 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS18 6 33272010 33276510 FALSE 457 -0.585863588832874 28 33264074 33313388 NA 2 NA NA 2 NA 49314 NA 7 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS19 19 41859918 41872926 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS19BP1 22 39529093 39532855 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS2 16 1962052 1964860 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS20 8 56067295 56074581 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 5 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS21 20 62387116 62388520 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS23 5 82273358 82278577 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS24 10 78033732 78056813 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS25 11 119015712 119018691 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS26 12 56041351 56044697 FALSE 884 -0.87328128400006 13 55986964 56074489 0.522719719214577 1 0 0.522719719214577 1 0 87525 1 4 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS27 1 153990755 153992155 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS27A 2 55231903 55235853 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS27L 15 63125872 63158021 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS28 19 8321158 8323340 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS29 14 49570984 49599164 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS3 11 75399486 75422280 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS3A 4 151099573 151104652 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS4X 23 72255679 72277300 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS5 19 58386400 58394806 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6 9 19375715 19380254 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KA1 1 26529761 26575030 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KA2 6 166409364 166906451 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 24 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KA3 23 20149911 20267519 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KA4 11 64359148 64372215 FALSE 787 1.44957621292263 95 64359172 64556317 0.593481580287395 11 NA 0.593481580287395 11 NA 197145 NA 2 22 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KA5 14 90847862 91060636 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KA6 23 84058346 84187907 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KB1 17 59893046 59950564 FALSE 1206 0.676691816473717 77 59893075 59945389 0.593481580287395 6 NA 0.593481580287395 6 NA 52314 NA 2 31 2 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KB2 11 67428460 67435408 FALSE 792 1.33182006838387 90 67428516 67435355 0.593481580287395 10 NA 0.593481580287395 10 NA 6839 NA 1 14 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KC1 1 213051233 213274773 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS6KL1 14 74903954 74923396 FALSE 985 -0.352585010986809 44 74858407 75009033 0.18904974046126 3 NA 0.18904974046126 3 NA 150626 NA 6 13 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS7 2 3575205 3580920 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS8 1 44775251 44778779 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPS9 19 54200742 54249003 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 30 10 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPSA 3 39406689 39412542 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPTN 1 152153595 152159228 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPTOR 17 80544819 80966371 FALSE 1237 1.18369158002318 87 80544926 80966376 0.593481580287395 9 NA 0.593481580287395 9 NA 421450 NA 1 47 11 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPUSD1 16 784974 788397 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPUSD2 15 40569300 40574943 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPUSD3 3 9837849 9844602 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RPUSD4 11 126202094 126211692 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 8 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRAD 16 66921679 66925644 FALSE 1109 -0.33919625732687 44 66884321 67009101 0.18904974046126 3 NA 0.18904974046126 3 NA 124780 NA 7 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRAGA 9 19049395 19050983 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRAGB 23 55717739 55758774 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRAGC 1 38838198 38859823 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRAGD 6 89364636 89412270 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRAS 19 49635292 49640201 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRAS2 11 14277926 14364506 FALSE 764 1.94645632592676 111 14278124 14364477 0.593481580287395 16 NA 0.593481580287395 16 NA 86353 NA 1 17 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRBP1 20 17613678 17682295 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 26 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RREB1 6 7107597 7251980 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRH 4 109827994 109844604 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRM1 11 4094707 4138876 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 19 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRM2 2 10120698 10131419 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRM2B 8 102204502 102239118 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRN3 16 15060022 15094317 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRNAD1 1 156728442 156736960 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP1 21 43789513 43805293 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 14 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP12 10 97356358 97426076 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 34 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP15 1 218285287 218337983 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP1B 21 43659548 43696079 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 18 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP36 6 43021645 43034156 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP7A 22 42509968 42519802 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP8 11 6595075 6603620 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRP9 3 51933430 51941941 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RRS1 8 66429028 66430733 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RS1 23 18639910 18672109 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSAD1 17 50478800 50485975 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSAD2 2 6865806 6898239 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSBN1 1 113761832 113812476 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSBN1L 7 77696443 77783022 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSC1A1 1 15659869 15661722 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSF1 11 77659996 77821017 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSL1D1 16 11833850 11851585 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSL24D1 15 55180806 55197067 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH1 21 42472486 42496354 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH10B 7 5925550 5970683 FALSE 519 -0.179912547532896 52 5563734 6005889 0.426118104232275 3 NA 0.426118104232275 3 NA 442155 NA 7 14 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH10B2 7 6754109 6799365 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH14 22 23059415 23145021 FALSE 1422 -1.11892841169056 7 23059635 23161569 0.593443012170704 1 0 0.593443012170704 1 0 101934 1 3 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH3 6 158972871 159000187 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH4A 6 116616479 116632985 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH6A 19 45795710 45815319 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPH9 6 43645046 43672599 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPO1 1 37611350 37634923 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPO2 8 107899316 108083648 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPO3 6 127118604 127197765 FALSE 490 2.26538462784147 120 127119148 127150530 0.593481580287395 21 NA 0.593481580287395 21 NA 31382 NA 1 113 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPO4 20 958452 1002264 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSPRY1 16 57186137 57240475 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSRC1 3 158105855 158545730 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSRC2 12 122503458 122527000 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSRP1 1 25242237 25338213 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RSU1 10 16590611 16817528 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTBDN 19 12825478 12835428 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTCA 1 100266207 100292769 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTCB 22 32387582 32412255 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTEL1 20 63657810 63696253 TRUE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 38 9 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTEL1-TNFRSF6B 20 63659300 63698684 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 44 11 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTF1 15 41408408 41483563 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTF2 20 56468585 56519449 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 16 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTKN 2 74425836 74442422 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTKN2 10 62183035 62268707 FALSE 722 2.53784042624582 124 62091300 62198353 0.593481580287395 26 NA 0.593481580287395 26 NA 107053 NA 2 14 5 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL1 14 100879753 100903722 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL10 22 19846138 19854896 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL3 23 78656069 78659328 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL4 23 112454500 112457112 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 4 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL5 23 72127110 72131901 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL6 22 44492572 44498298 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL8A 23 135050932 135052196 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL8B 23 135020504 135022529 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL8C 23 135032366 135033546 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTL9 23 110358816 110456334 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN1 14 59595976 59870966 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN2 19 45485289 45497061 FALSE 1348 0.0505055964886688 60 45373781 45485732 0.593443012170704 3 NA 0.593443012170704 3 NA 111951 NA 5 13 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN3 11 63681446 63759891 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 18 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN4 2 54972187 55112621 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN4IP1 6 106571971 106629487 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN4R 22 20241415 20283246 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN4RL1 17 1934677 2025345 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTN4RL2 11 57460549 57477534 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTP1 3 187197486 187201465 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTP2 3 187698259 187702557 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTP3 3 46497491 46500949 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTP4 3 187368332 187372076 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTP5 2 241869600 241873823 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTRAF 14 51989475 52010691 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RTTN 18 70003031 70205945 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 51 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUBCN 3 197671393 197749727 FALSE 321 -0.467968190041876 37 197514413 198169785 NA 2 NA NA 2 NA 655372 NA 7 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUBCNL 13 46342000 46438190 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 16 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUFY1 5 179550558 179610026 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUFY2 10 68341107 68407294 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 24 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUFY3 4 70704204 70807315 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUFY4 2 218034960 218090581 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUNDC1 17 42980565 42993690 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUNDC3A 17 44308413 44318671 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUNDC3B 7 87627548 87832296 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUNX1 21 34787801 36004667 TRUE 1401 1.7440375545988 103 34782863 34888551 0.593481580287395 14 NA 0.593481580287395 14 NA 105688 NA 2 50 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUNX1T1 8 91954967 92103286 FALSE 629 2.35790980072021 121 91959063 92095569 0.593481580287395 22 NA 0.593481580287395 22 NA 136506 NA 1 29 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUNX2 6 45328157 45664349 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUNX3 1 24899511 24965121 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUSC1 1 155320896 155331114 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 21 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUSC2 9 35490127 35561898 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUVBL1 3 128064778 128153914 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RUVBL2 19 48993448 49015995 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RWDD1 6 116571367 116597675 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RWDD2A 6 83193379 83198932 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RWDD2B 21 29004384 29019378 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RWDD3 1 95234155 95247225 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RWDD4 4 183639635 183659225 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXFP1 4 158315311 158653372 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXFP2 13 31739542 31803388 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 22 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXFP3 5 33936386 33938237 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXFP4 1 155941710 155942949 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXRA 9 134317098 134440585 FALSE 704 2.04640453975753 115 134326610 134440530 0.593481580287395 18 NA 0.593481580287395 18 NA 113920 NA 1 29 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXRB 6 33193588 33200688 FALSE 456 -0.636119947778167 28 33164464 33263766 NA 2 NA NA 2 NA 99302 NA 6 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXRG 1 165400917 165445355 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RXYLT1 12 63779803 63809558 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RYBP 3 72371825 72446621 TRUE 268 2.20827430378542 120 72371939 72379379 0.593481580287395 20 NA 0.593481580287395 20 NA 7440 NA 1 38 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RYK 3 134065303 134250744 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RYR1 19 38433699 38587564 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 124 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RYR2 1 237042205 237833988 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 117 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 RYR3 15 33310945 33866121 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 116 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A1 1 153627926 153632039 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A10 1 151982915 151994390 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A11 1 152032506 152047907 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A12 1 153373706 153375649 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A13 1 153618787 153631360 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A14 1 153614255 153616986 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A16 1 153606886 153613145 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A2 1 153561108 153567890 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A3 1 153547329 153549372 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A4 1 153543613 153550136 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A5 1 153537147 153541765 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A6 1 153534599 153536244 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A7 1 153457744 153460701 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A7A 1 153416524 153423225 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A7L2 1 153437058 153439949 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A8 1 153390032 153391188 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100A9 1 153357854 153361027 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100B 21 46598962 46605208 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100G 23 16650158 16654670 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100P 4 6693069 6697170 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100PBP 1 32816767 32858879 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S100Z 5 76850001 76921650 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S1PR1 1 101236865 101243713 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S1PR2 19 10221433 10231331 FALSE 1295 2.2113957021707 120 10195122 10231337 0.593481580287395 20 NA 0.593481580287395 20 NA 36215 NA 2 11 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S1PR3 9 88990863 89005010 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S1PR4 19 3172346 3180332 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 S1PR5 19 10512742 10517931 FALSE 1297 1.51618078485133 98 10486135 10514913 0.593481580287395 12 NA 0.593481580287395 12 NA 28778 NA 2 5 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAA1 11 18266174 18269977 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAA2 11 18239223 18248643 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAA2-SAA4 11 18231423 18248635 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAA4 11 18231349 18236893 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAAL1 11 18069935 18106091 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAC3D1 11 65040901 65044828 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SACM1L 3 45689056 45745424 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 20 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SACS 13 23328826 23433740 FALSE 936 -0.225761891902548 49 23203701 23341233 0.331933131290263 3 NA 0.331933131290263 3 NA 137532 NA 2 59 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAE1 19 47113274 47210636 FALSE 1351 -0.803313559004103 18 47021105 47209252 0.387809979850725 1 0 0.387809979850725 1 0 188147 1 4 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAFB 19 5623035 5668478 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAFB2 19 5586999 5624046 FALSE 1283 -0.166515219977271 52 5290928 5587926 0.426118104232275 3 NA 0.426118104232275 3 NA 296998 NA 4 22 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAG 2 233307816 233347055 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAGE1 23 135889205 135913061 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 20 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SALL1 16 51135975 51151367 FALSE 1103 0.63672383657968 75 50742017 51142028 0.593481580287395 6 NA 0.593481580287395 6 NA 400011 NA 2 16 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SALL2 14 21521081 21537216 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SALL3 18 78980275 79002677 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 16 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SALL4 20 51782331 51802520 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD1 19 14087840 14091036 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD10 20 63974113 63980008 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD11 1 923928 944581 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD12 8 118189455 118622112 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD13 1 84298366 84389957 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD14 17 50110040 50129882 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD15 14 77376689 77391497 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 10 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD3 6 130144315 130365425 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD4A 14 54567097 54793315 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD4B 19 39342396 39385710 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD5 6 147508927 147737547 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD7 3 169911572 169939175 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD8 10 75099586 75182123 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 14 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD9 7 93099513 93118023 FALSE 545 0.628219408839338 75 92617301 93135387 0.593481580287395 6 NA 0.593481580287395 6 NA 518086 NA 3 19 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMD9L 7 93130055 93148369 FALSE 545 0.628219408839338 75 92617301 93135387 0.593481580287395 6 NA 0.593481580287395 6 NA 518086 NA 3 19 0 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMHD1 20 36889773 36951901 TRUE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMM50 22 43955421 44010531 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 17 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAMSN1 21 14485228 14658821 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 17 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAP130 2 127941217 128028120 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAP18 13 21140514 21149084 FALSE 934 -0.998766566201071 11 21140591 21604174 0.593443012170704 1 0 0.593443012170704 1 0 463583 1 5 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAP25 7 100572228 100573820 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAP30 4 173369969 173377532 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAP30BP 17 75667116 75708062 FALSE 1229 -0.166870124513272 52 75622079 75765208 0.426118104232275 3 NA 0.426118104232275 3 NA 143129 NA 7 12 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAP30L 5 154445957 154461054 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAPCD1 6 31762799 31764851 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAPCD2 9 137062124 137070588 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAR1A 10 70147289 70170523 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAR1B 5 134601144 134649271 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SARAF 8 30063012 30083208 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SARDH 9 133663560 133739955 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SARM1 17 28364356 28404049 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SARNP 12 55752463 55817756 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SARS 1 109213918 109238169 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SARS2 19 38915266 38930896 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SART1 11 65961689 65979828 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SART3 12 108522580 108561400 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 21 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SASH1 6 148272304 148552050 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 32 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SASH3 23 129779979 129795201 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SASS6 1 100083563 100132955 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAT1 23 23783173 23786226 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAT2 17 7626234 7627876 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SATB1 3 18345387 18445588 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SATB2 2 199269500 199471266 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SATL1 23 85092287 85243961 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAV1 14 50632058 50668331 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAXO1 9 18858906 19049358 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAXO2 15 82262810 82284930 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SAYSD1 6 39104064 39115189 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBDS 7 66987677 66995601 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBF1 22 50445000 50475024 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 40 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBF2 11 9778667 10294207 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 42 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBK1 16 28292519 28323849 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBK2 19 55529733 55537089 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBK3 19 55540656 55545543 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBNO1 12 123289109 123364843 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 33 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBNO2 19 1107636 1174283 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 35 7 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBSN 19 35523367 35528351 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SBSPON 8 73064540 73124088 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SC5D 11 121292453 121308694 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAF1 19 49642125 49658642 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAF11 12 45919131 45992120 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAF4 21 31671033 31732075 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAF8 6 154733325 154834244 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAI 9 124942608 125143506 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAMP1 5 78360583 78479071 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAMP2 15 74843730 74873365 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAMP3 1 155255979 155262430 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAMP4 19 1905214 1926013 FALSE 1273 -0.25894147960311 49 1753671 2151263 0.331933131290263 3 NA 0.331933131290263 3 NA 397592 NA 13 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAMP5 15 74957219 75021496 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAND1 20 35953617 35959472 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAP 3 47413694 47477126 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 27 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCAPER 15 76347904 76905444 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 35 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCARA3 8 27633868 27676776 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCARA5 8 27869882 27992727 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCARB1 12 124776856 124882668 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCARB2 4 76158733 76234536 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCARF1 17 1633858 1645747 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCARF2 22 20424815 20437826 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCCPDH 1 246724047 246768137 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCD 10 100347124 100364834 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCD5 4 82629539 82798857 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCEL 13 77535674 77645263 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 32 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCFD1 14 30622112 30735812 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCFD2 4 52872982 53366075 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCG2 2 223596940 223602503 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCG3 15 51681353 51721031 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCG5 15 32641676 32697098 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB1A1 11 62405103 62423195 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB1C1 11 193080 194573 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 3 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB1D1 11 62190216 62193539 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB1D2 11 62242210 62244808 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB1D4 11 62296277 62299064 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB2A1 11 62208668 62213939 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB2A2 11 62270155 62273156 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB2B2 19 34593329 34675699 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB3A1 5 180590103 180591540 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGB3A2 5 147870682 147882191 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCGN 6 25652201 25701783 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCHIP1 3 159839861 159897360 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCIMP 17 5208961 5234860 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCIN 7 12570577 12660179 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCLT1 4 128864921 129093607 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCLY 2 238060889 238099413 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCMH1 1 41027200 41242154 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCML1 23 17737449 17754988 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCML2 23 18239314 18354727 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCML4 6 107704104 107824317 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN10A 3 38696807 38816217 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 37 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN11A 3 38845769 38950561 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN1A 2 165984641 166149214 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 38 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN1B 19 35030466 35040449 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN2A 2 165194993 165392310 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 39 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN2B 11 118161951 118176673 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN3A 2 165087522 165204067 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 38 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN3B 11 123629187 123655244 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN4A 17 63938554 63972918 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 33 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN4B 11 118133377 118152888 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN5A 3 38548057 38649673 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 40 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN7A 2 166403573 166494326 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN8A 12 51590266 51812864 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 40 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCN9A 2 166195185 166376001 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 38 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCNM1 1 151156664 151170297 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCNN1A 12 6346843 6377730 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCNN1B 16 23278231 23381299 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCNN1D 1 1280436 1292029 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCNN1G 16 23182715 23216883 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCO1 17 10672474 10698375 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCO2 22 50523568 50526439 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCOC 4 140257286 140385726 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCP2 1 52927229 53051703 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCP2D1 20 18813726 18814392 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 2 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCPEP1 17 56978105 57006768 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCRG1 4 173384701 173406380 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCRIB 8 143790920 143815379 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 36 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCRN1 7 29920103 29990289 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCRN2 17 47837692 47841333 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCRN3 2 174395730 174429575 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCRT1 8 144330565 144336281 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCRT2 20 661596 676179 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCT 11 626431 627143 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCTR 2 119439843 119525301 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCUBE1 22 43197283 43343388 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCUBE2 11 9019498 9138114 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCUBE3 6 35214419 35253079 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCX 8 144266560 144268481 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 1 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCYL1 11 65525077 65538704 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCYL2 12 100267140 100341724 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SCYL3 1 169849631 169894267 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDAD1 4 75940950 75990962 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDC1 2 20200797 20225433 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDC2 8 96493351 96611780 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDC3 1 30869467 30908761 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDC4 20 45325288 45348424 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 13 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDCBP 8 58552924 58582860 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDCBP2 20 1309909 1329239 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDCCAG8 1 243256034 243500092 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 20 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDE2 1 225982702 225999331 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDF2 17 28648356 28662189 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDF2L1 22 21642261 21644298 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDF4 1 1216908 1232031 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHA 5 218241 256700 TRUE 366 -0.0813597508595068 54 92226 256841 0.569455701337318 3 NA 0.569455701337318 3 NA 164615 NA 4 24 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHAF1 19 35995199 35996315 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHAF2 11 61430042 61447529 TRUE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHAF3 7 97116590 97181763 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHAF4 6 70566917 70589569 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHB 1 17018722 17054170 TRUE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHC 1 161314257 161375340 TRUE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDHD 11 112086773 112120013 TRUE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDK1 7 3301448 4269000 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 52 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDK2 17 73334384 73644089 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 54 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDR16C5 8 56300010 56320776 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDR39U1 14 24439766 24442905 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDR42E1 16 81988855 82011488 FALSE 1121 2.21406007803335 120 81957980 81999432 0.593481580287395 20 NA 0.593481580287395 20 NA 41452 NA 2 6 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDR9C7 12 56923154 56934405 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDS 12 113392445 113426301 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SDSL 12 113422237 113438276 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEBOX 17 28364268 28365244 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC11A 15 84669538 84716716 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC11C 18 59139477 59158836 FALSE 1261 -0.626771039159971 28 58934445 59897059 NA 2 NA NA 2 NA 962614 NA 7 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC13 3 10293131 10321178 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC14L1 17 77088749 77217101 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 18 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC14L2 22 30396857 30425317 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC14L3 22 30447959 30472049 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 13 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC14L4 22 30488913 30505711 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC14L5 16 4958317 5019158 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC14L6 22 30522799 30546682 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC16A 9 136440096 136483759 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 43 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC16B 1 177923956 177984303 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 28 7 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC22A 3 123201927 123274130 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC22B 1 120150898 120176515 FALSE 51 -0.542057961132992 31 120176337 120809863 NA 2 NA NA 2 NA 633526 NA 2 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC22C 3 42547969 42601080 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC23A 14 39031919 39109646 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 21 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC23B 20 18507482 18561415 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC23IP 10 119892711 119944658 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC24A 5 134648789 134727823 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC24B 4 109433772 109540896 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC24C 10 73744384 73772161 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 23 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC24D 4 118722823 118838683 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC31A 4 82818661 82901166 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC31B 10 100486642 100519864 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 28 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC61A1 3 128051641 128071683 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC61A2 10 12129637 12169961 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC61B 9 99222064 99230615 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC61G 7 54752250 54759974 FALSE 533 -0.636373738560084 28 50463408 55129820 NA 2 NA NA 2 NA 4666412 NA 8 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC62 3 169966635 169998373 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEC63 6 107867756 107958189 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SECISBP2 9 89318506 89359662 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SECISBP2L 15 48988476 49046563 FALSE 1026 -0.585321086732959 28 48768195 49422724 NA 2 NA NA 2 NA 654529 NA 7 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SECTM1 17 82321024 82334074 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEH1L 18 12947133 12987536 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEL1L 14 81471549 81533861 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEL1L2 20 13849247 13996443 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEL1L3 4 25747427 25863760 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELE 1 169722641 169764705 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENBP1 1 151364302 151372733 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOF 1 86862445 86914424 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOH 11 57741250 57743554 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOI 2 26308547 26395891 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 31 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOK 3 53884410 53891988 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOM 22 31104772 31120069 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENON 1 25800176 25818224 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOO 22 50200979 50217616 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOP 5 42799880 42887392 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOS 15 101270817 101277500 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOT 3 150602875 150630445 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOV 19 39515113 39520686 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELENOW 19 47778572 47784686 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELL 1 169690667 169711698 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELP 1 169588849 169630193 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SELPLG 12 108622277 108633959 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEM1 7 96481626 96709891 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA3A 7 83955777 84492724 FALSE 539 -0.201108450825736 52 81959300 85121890 0.426118104232275 3 NA 0.426118104232275 3 NA 3162590 NA 5 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA3B 3 50267558 50277546 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA3C 7 80742538 80922359 FALSE 537 -0.268216004269263 46 80135271 80922339 0.261157737158964 3 NA 0.261157737158964 3 NA 787068 NA 4 20 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA3D 7 84995553 85186855 FALSE 539 -0.201108450825736 52 81959300 85121890 0.426118104232275 3 NA 0.426118104232275 3 NA 3162590 NA 5 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA3E 7 83363238 83649113 FALSE 539 -0.201108450825736 52 81959300 85121890 0.426118104232275 3 NA 0.426118104232275 3 NA 3162590 NA 5 19 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA3F 3 50155045 50189075 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA3G 3 52433053 52445085 FALSE 260 -0.548533387558164 31 52412304 52540384 NA 2 NA NA 2 NA 128080 NA 7 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA4A 1 156147366 156177752 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 16 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA4B 15 90160604 90229679 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 18 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA4C 2 96859716 96870757 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA4D 9 89360787 89498130 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA4F 2 74654228 74683853 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA4G 10 100969518 100985871 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA5A 5 9035026 9546075 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA5B 3 122909082 123028605 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA6A 5 116443616 116574934 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA6B 19 4542593 4559808 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA6C 1 151131685 151146664 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 22 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA6D 15 47184101 47774223 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMA7A 15 74409289 74433958 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMG1 20 45206997 45209772 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEMG2 20 45221300 45224458 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP1 12 48042898 48106308 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP2 3 185582496 185633551 FALSE 308 -0.794389979193731 18 185491580 185937798 0.387809979850725 1 0 0.387809979850725 1 0 446218 1 5 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP3 17 7561875 7571969 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP3-EIF4A1 17 7563287 7578715 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP5 3 196867856 196934714 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP6 6 75601509 75718278 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP7 3 101324205 101513241 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SENP8 15 72114258 72143688 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPHS1 10 13317424 13348298 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPHS2 16 30443631 30446181 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPSECS 4 25120014 25160442 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT1 16 30378133 30395991 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT10 2 109542982 109614206 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT11 4 76949703 77040384 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT12 16 4777669 4788521 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT14 7 55793544 55862789 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT2 2 241315100 241354027 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT3 22 41969475 41998221 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT4 17 58520250 58540818 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT5 22 19714464 19724224 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT5-GP1BB 22 19717220 19724772 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT6 23 119615724 119693370 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT7 7 35800932 35907105 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT8 5 132750817 132807241 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEPT9 17 77280569 77500596 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 19 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERAC1 6 158109515 158168280 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERBP1 1 67407810 67430415 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERF1B 5 70025247 70043113 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERF2 15 43777087 43802589 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 21 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERGEF 11 17788048 18013162 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERHL2 22 42553617 42574382 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERINC1 6 122443354 122471822 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERINC2 1 31409565 31434680 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 14 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERINC3 20 44496221 44522109 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERINC4 15 43794162 43800221 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERINC5 5 80111651 80256079 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERP1 3 150541994 150603228 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERP2 13 44373665 44397714 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA1 14 94376747 94390693 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA10 14 94280455 94293271 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA11 14 94442464 94452790 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA12 14 94487274 94517844 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA3 14 94612377 94624055 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA4 14 94561091 94569913 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA5 14 94561442 94593120 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA6 14 94304248 94323394 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA7 23 106032442 106038738 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINA9 14 94462717 94479689 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB1 6 2832332 2842006 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB10 18 63897174 63936111 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB11 18 63647579 63726432 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB12 18 63556160 63567011 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB13 18 63586989 63604639 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB2 18 63871692 63903890 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB3 18 63655197 63661963 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB4 18 63637259 63644298 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB5 18 63476761 63505085 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB6 6 2948159 2972165 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB7 18 63752935 63805376 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB8 18 63969925 64019779 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINB9 6 2887266 2903280 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINC1 1 173903804 173917378 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPIND1 22 20773879 20787720 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINE1 7 101127089 101139266 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINE2 2 223975112 224039319 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINE3 13 51335773 51364735 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINF1 17 1761959 1777574 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINF2 17 1742836 1755268 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPING1 11 57597387 57614853 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINH1 11 75562056 75572783 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 7 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINI1 3 167735243 167825568 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERPINI2 3 167441789 167479004 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERTAD1 19 40421592 40426025 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERTAD2 2 64631621 64751005 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERTAD3 19 40440844 40444705 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERTAD4 1 210232799 210246631 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERTM1 13 36673912 36697839 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SERTM2 23 111511662 111522399 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SESN1 6 108986437 109094819 TRUE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SESN2 1 28259527 28282491 TRUE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SESN3 11 95165513 95232541 TRUE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SESTD1 2 179101692 179264790 FALSE 191 -0.789559166320211 18 178752075 181062791 0.387809979850725 1 0 0.387809979850725 1 0 2310716 1 6 17 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SET 9 128683424 128696400 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETBP1 18 44680173 45068510 FALSE 1254 2.17542331182351 118 44680383 45068514 0.593481580287395 20 NA 0.593481580287395 20 NA 388131 NA 1 49 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD1A 16 30957294 30984664 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD1B 12 121804180 121832584 FALSE 926 2.34022481939284 121 121804769 121840048 0.593481580287395 22 NA 0.593481580287395 22 NA 35279 NA 2 30 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD2 3 47016429 47163967 TRUE 251 1.014603602249 83 47011447 47169172 0.593481580287395 8 NA 0.593481580287395 8 NA 157725 NA 1 55 4 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD3 14 99397746 99480889 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD4 21 36034541 36079389 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD5 3 9397615 9479240 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD6 16 58515479 58521181 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD7 4 139495941 139606699 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETD9 5 56909260 56925532 FALSE 378 -0.616076199226728 28 56909685 57262664 NA 2 NA NA 2 NA 352979 NA 3 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETDB1 1 150926263 150964744 TRUE 56 1.18903047908319 87 150926492 150966523 0.593481580287395 9 NA 0.593481580287395 9 NA 40031 NA 2 34 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETDB2 13 49444374 49495003 TRUE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETMAR 3 4303304 4317567 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETSIP 1 92074533 92075441 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SETX 9 132261356 132354985 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 43 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEZ6 17 28954901 29006440 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEZ6L 22 26169474 26383597 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SEZ6L2 16 29871159 29899547 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF1 11 64764606 64778786 FALSE 788 -0.567376751383287 31 64559137 64803166 NA 2 NA NA 2 NA 244029 NA 7 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3A1 22 30331988 30356947 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 17 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3A2 19 2236504 2248679 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3A3 1 37956975 37990921 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3B1 2 197389784 197435091 FALSE 200 1.35242866892434 91 197383624 197435037 0.593481580287395 10 NA 0.593481580287395 10 NA 51413 NA 1 46 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3B2 11 66050729 66069308 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 22 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3B3 16 70523788 70577670 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3B4 1 149923317 149928344 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3B5 6 144094881 144095573 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SF3B6 2 24067584 24076443 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFI1 22 31488688 31618586 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 33 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFMBT1 3 52903572 53046750 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFMBT2 10 7158624 7411486 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFN 1 26863138 26864457 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFPQ 1 35176378 35193148 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFR1 10 104122058 104126385 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFRP1 8 41261958 41309497 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFRP2 4 153780592 153789120 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFRP4 7 37905932 38025695 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFRP5 10 97766751 97771952 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFSWAP 12 131711081 131799737 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFT2D1 6 166319728 166342591 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFT2D2 1 168225938 168253025 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFT2D3 2 127701508 127705242 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFTA2 6 30931353 30955636 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 21 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFTA3 14 36473288 36513829 FALSE 972 -0.135983194539659 52 35406876 36513087 0.426118104232275 3 NA 0.426118104232275 3 NA 1106211 NA 5 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFTPA1 10 79610939 79615455 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFTPA2 10 79555852 79560402 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFTPB 2 85657314 85668741 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 11 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFTPC 8 22156913 22164479 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFTPD 10 79937740 79982614 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFXN1 5 175477062 175529742 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFXN2 10 102714538 102743492 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFXN3 10 101031234 101041244 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFXN4 10 119140767 119165667 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 14 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SFXN5 2 72942036 73075619 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGCA 17 50164214 50175931 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGCB 4 52020706 52038482 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGCD 5 155870344 156767788 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGCE 7 94524204 94656572 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 32 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGCG 13 23180952 23325165 FALSE 936 -0.225761891902548 49 23203701 23341233 0.331933131290263 3 NA 0.331933131290263 3 NA 137532 NA 2 7 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGCZ 8 14089864 15238339 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGF29 16 28553915 28591790 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGIP1 1 66533383 66748299 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGK1 6 134169246 134318112 FALSE 492 1.89004720813198 109 134052461 134317986 0.593481580287395 16 NA 0.593481580287395 16 NA 265525 NA 2 31 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGK2 20 43558968 43588237 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGK3 8 66667596 66862022 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 19 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGK494 17 28607964 28614200 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGMS1 10 50305586 50625163 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGMS2 4 107824563 107915047 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGO1 3 20160593 20186292 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGO2 2 200510008 200583782 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGPL1 10 70815961 70881173 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGPP1 14 63684214 63728039 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGPP2 2 222424517 222560948 FALSE 219 1.06005349802167 83 222199982 222424797 0.593481580287395 8 NA 0.593481580287395 8 NA 224815 NA 3 7 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGSH 17 80206716 80220923 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGSM1 22 24806169 24927578 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 27 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGSM2 17 2337498 2381058 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 26 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGSM3 22 40370591 40410289 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGTA 19 2754714 2783371 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SGTB 5 65665928 65723035 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2B1 16 28846600 28874212 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2B2 7 102285091 102321711 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2B3 12 111405948 111451623 TRUE 912 0.916334203900635 81 111347634 111447046 0.593481580287395 7 NA 0.593481580287395 7 NA 99412 NA 4 25 2 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D1A 23 124227868 124373197 TRUE 1510 0.251681096820913 64 124123960 124335008 0.593443012170704 4 NA 0.593443012170704 4 NA 211048 NA 3 35 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D1B 1 162395266 162412138 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D2A 1 156806243 156816862 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D3A 19 6752160 6767588 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D3C 9 127738317 127778741 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 23 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D4A 8 19313617 19396218 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D4B 10 80537902 80646560 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D5 1 20719732 20732837 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D6 2 85418721 85437029 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH2D7 15 78077808 78104909 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BGR 21 39445855 39515506 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BGRL 23 81201943 81298547 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BGRL2 6 79631283 79703659 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BGRL3 1 26279176 26281522 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BP1 22 37634654 37656119 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BP2 4 2793023 2841098 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BP4 2 234951973 235055714 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BP5 3 15254853 15341368 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3BP5L 1 248810446 248826633 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3D19 4 151102751 151325632 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 28 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3D21 1 36306387 36324886 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3GL1 19 4360370 4400547 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3GL2 9 17579082 17797129 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3GL3 15 83447228 83618743 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3GLB1 1 86704570 86748184 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3GLB2 9 129007036 129028303 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3KBP1 23 19533975 19887601 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3PXD2A 10 103594027 103855543 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3PXD2B 5 172325000 172454523 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3RF1 4 169094256 169271105 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3RF2 5 145936579 146081791 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3RF3 2 109129348 109504632 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3TC1 4 8182072 8241803 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 27 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3TC2 5 148923639 149063163 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SH3YL1 2 217730 266398 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 12 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHANK1 19 50661827 50719450 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 39 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHANK2 11 70467856 71252577 FALSE 796 -0.528927183156658 34 70103077 71501385 NA 2 NA NA 2 NA 1398308 NA 7 33 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHANK3 22 50674415 50733298 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHARPIN 8 144098633 144108124 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHB 9 37919134 38069211 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHBG 17 7613946 7633383 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHC1 1 154962298 154974395 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHC2 19 416583 460996 FALSE 1268 -0.550469679268302 31 110858 440853 NA 2 NA NA 2 NA 329995 NA 6 14 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHC3 9 89005771 89178767 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHC4 15 48823735 48963444 FALSE 1026 -0.585321086732959 28 48768195 49422724 NA 2 NA NA 2 NA 654529 NA 7 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHCBP1 16 46580554 46621626 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 15 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHCBP1L 1 182899865 182953525 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHD 19 4278601 4290724 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHE 1 154469772 154502113 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHF 15 45167214 45201175 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHH 7 155799986 155812273 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA2 13 26044597 26051031 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA3 4 42397839 42402487 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA4 1 201888680 201892306 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA5 3 48467798 48504826 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA6 17 11241263 11564063 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA7 19 55428740 55442863 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA8 22 41909554 41914667 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISA9 16 12901620 13240413 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 9 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISAL1 22 44243667 44312851 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISAL2A 1 52633344 52669683 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHISAL2B 5 64690308 64718090 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHKBP1 19 40576851 40591399 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 19 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHLD1 20 5750393 5863912 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHLD2 10 87094161 87191468 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHLD3 5 65624765 65630891 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHMT1 17 18327860 18363563 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHMT2 12 57229327 57234935 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 12 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHOC2 10 110919547 111013667 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHOX2 3 158095954 158106503 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHPK 17 3608262 3636322 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHPRH 6 145864245 145964423 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 38 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHQ1 3 72749277 72861914 TRUE 269 0.192912274836072 63 72385023 72888319 0.54220702508464 4 NA 0.54220702508464 4 NA 503296 NA 3 28 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHROOM1 5 132822141 132830898 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHROOM2 23 9786456 9949443 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHROOM3 4 76435100 76783253 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHROOM4 23 50591647 50814302 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SHTN1 10 116881482 117126586 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SI 3 164978898 165078495 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 47 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIAE 11 124633113 124695707 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIAH1 16 48356364 48448402 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIAH2 3 150741127 150763477 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIAH3 13 45777243 45851736 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIDT1 3 113532296 113629578 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIDT2 11 117178733 117197445 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 26 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGIRR 11 405716 417455 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC1 20 3686970 3707128 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 34 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC10 19 51410021 51417803 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC11 19 49948985 49961172 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC12 19 51491357 51501789 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 12 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC14 19 51642553 51646801 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC15 18 45825512 45844080 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC5 19 51611927 51645545 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 14 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC6 19 51519525 51531856 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC7 19 51142299 51153526 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC8 19 51450847 51458456 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLEC9 19 51124908 51136651 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGLECL1 19 51246348 51269330 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIGMAR1 9 34634722 34637809 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIK2 11 111602391 111730853 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIK3 11 116843402 117098437 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 28 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIKE1 1 114769479 114780685 FALSE 40 -0.536195164432015 31 114718137 115663936 NA 2 NA NA 2 NA 945799 NA 7 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIL1 5 138946720 139293557 FALSE 397 0.440919835414963 70 138568982 138951267 0.569287299993522 5 NA 0.569287299993522 5 NA 382285 NA 4 10 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIM1 6 100385015 100464929 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIM2 21 36699133 36749917 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIMC1 5 176238367 176345991 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIN3A 15 75369379 75455842 FALSE 1039 2.00352950650831 113 75369505 75455854 0.593481580287395 17 NA 0.593481580287395 17 NA 86349 NA 1 48 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIN3B 19 16829400 16880353 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SINHCAF 12 31280584 31327058 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIPA1 11 65638097 65650930 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIPA1L1 14 71320449 71741229 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 33 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIPA1L2 1 232397965 232561558 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIPA1L3 19 37907228 38208372 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRPA 20 1894167 1940592 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRPB1 20 1563521 1620061 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 12 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRPB2 20 1470741 1491587 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRPD 20 1534251 1558843 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRPG 20 1629152 1657779 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 8 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRT1 10 67884669 67918390 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRT2 19 38878555 38899862 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRT3 11 215458 236931 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRT4 12 120302316 120313249 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRT5 6 13574529 13615158 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRT6 19 4174109 4182604 FALSE 1280 -0.209689282947919 52 4153710 4175107 0.426118104232275 3 NA 0.426118104232275 3 NA 21397 NA 2 10 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIRT7 17 81911939 81921323 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIT1 9 35649295 35650950 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIVA1 14 104753100 104768494 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIX1 14 60643415 60658259 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIX2 2 45005161 45009430 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIX3 2 44941898 44946077 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIX4 14 60709528 60724348 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIX5 19 45764785 45769226 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SIX6 14 60508951 60512850 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKA1 18 50374995 50394173 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKA2 17 59109951 59155269 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKA3 13 21153595 21176602 FALSE 934 -0.998766566201071 11 21140591 21604174 0.593443012170704 1 0 0.593443012170704 1 0 463583 1 5 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKAP1 17 48133440 48430275 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 12 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKAP2 7 26667062 26995239 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKI 1 2228695 2310119 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKIDA1 10 21513478 21526368 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKIL 3 170357678 170396835 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKIV2L 6 31959080 31969755 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 28 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKOR1 15 67819704 67834561 FALSE 1034 -0.650081137244343 25 67202833 68183661 0.276933305076759 1 0 0.276933305076759 1 0 980828 1 6 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKOR2 18 47206322 47251603 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKP1 5 134148935 134177038 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SKP2 5 36151989 36184319 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLA 8 133036724 133103054 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 10 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLA2 20 36612318 36646216 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLAIN1 13 77697854 77764242 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLAIN2 4 48341322 48426212 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLAMF1 1 160608100 160647295 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLAMF6 1 160485030 160523262 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLAMF7 1 160739057 160754821 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLAMF8 1 159826750 159837249 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLAMF9 1 159951492 159954254 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLBP 4 1692800 1712555 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC10A1 14 69775417 69797289 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC10A2 13 103043998 103066846 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC10A3 23 154487306 154490690 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC10A4 4 48483343 48489196 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC10A5 8 81693607 81696174 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC10A6 4 86823468 86849263 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC10A7 4 146253975 146521964 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC11A1 2 218382029 218396894 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC11A2 12 50979401 51028566 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A1 15 48178438 48304078 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A2 5 128083766 128189688 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 29 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A3 16 56865207 56915850 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A4 16 67943474 67969601 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A5 20 46021690 46060152 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 28 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A6 15 34229996 34338060 FALSE 1005 -0.590910847292091 28 32774341 34336679 NA 2 NA NA 2 NA 1562338 NA 9 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A7 5 1050376 1112035 FALSE 368 -0.258104479076551 49 876120 1244670 0.331933131290263 3 NA 0.331933131290263 3 NA 368550 NA 6 26 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A8 3 125082636 125212864 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC12A9 7 100826820 100867009 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC13A1 7 123113531 123199986 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC13A2 17 28473293 28497781 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC13A3 20 46557823 46684467 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC13A4 7 135681237 135729258 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 16 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC13A5 17 6684713 6713567 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 14 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC14A1 18 45687025 45752520 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC14A2 18 45212995 45683686 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 20 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC15A1 13 98683801 98752654 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 23 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC15A2 3 121894089 121944102 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC15A3 11 60937084 60952530 FALSE 781 -0.443388996781571 37 60921973 61017566 NA 2 NA NA 2 NA 95593 NA 4 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC15A4 12 128793191 128823983 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC15A5 12 16188485 16277685 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A1 1 112911847 112957013 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A10 6 111087503 111231194 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A11 17 7041630 7043923 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A12 10 89430299 89556641 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A13 17 7036075 7040121 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A14 2 230034974 230068999 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A2 23 74421461 74533917 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A3 17 82228397 82261129 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 18 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A4 1 110362848 110391082 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A5 17 75087727 75106162 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A6 17 68267026 68291267 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 8 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A7 12 59596067 59789855 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A8 22 38078134 38084093 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC16A9 10 59650761 59736002 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A1 6 25782897 25832059 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A2 6 25912754 25930726 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A3 6 25833066 25882286 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 11 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A4 6 25754699 25781191 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A5 6 73593379 73654155 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A6 11 22338097 22379503 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A7 19 49429401 49442360 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A8 12 100357079 100422059 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC17A9 20 62952647 62969585 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 16 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC18A1 8 20144855 20183206 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC18A2 10 117241073 117279430 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC18A3 10 49610301 49612720 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC18B1 6 132769370 132813339 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC19A1 21 45493572 45544411 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 32 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC19A2 1 169463909 169486003 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC19A3 2 227683763 227718031 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC1A1 9 4490444 4587469 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC1A2 11 35251205 35420063 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC1A3 5 36606355 36688334 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC1A4 2 64988477 65023865 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC1A5 19 46774883 46788594 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC1A6 19 14950034 15022990 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 22 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC1A7 1 53087179 53142632 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC20A1 2 112645857 112663827 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC20A2 8 42416475 42541926 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A1 6 160121789 160158718 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 12 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A10 11 63137867 63369718 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 24 7 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A11 11 64555626 64572875 FALSE 787 1.44957621292263 95 64359172 64556317 0.593481580287395 11 NA 0.593481580287395 11 NA 197145 NA 2 12 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A12 11 64590641 64602353 FALSE 788 -0.567376751383287 31 64559137 64803166 NA 2 NA NA 2 NA 244029 NA 7 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A13 3 38265812 38278757 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A14 3 38282294 38318575 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A15 1 115976498 116070054 FALSE 41 -0.81063338900568 15 115664208 116388119 0.449390955025597 1 0 0.449390955025597 1 0 723911 1 6 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A16 6 110424687 110476641 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A17 14 23346306 23352912 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A18 11 2899721 2925246 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A18AS 11 2887780 2903740 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A2 6 160171061 160277638 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A23 6 3268962 3457022 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A24 11 63079940 63144221 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A25 11 63163776 63229652 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 10 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A3 6 160348268 160452581 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A31 16 89195761 89201664 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 7 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A4 5 132294443 132344206 FALSE 394 -0.271932115962752 46 131990195 132441120 0.261157737158964 3 NA 0.261157737158964 3 NA 450925 NA 9 11 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A5 5 132369752 132395614 FALSE 394 -0.271932115962752 46 131990195 132441120 0.261157737158964 3 NA 0.261157737158964 3 NA 450925 NA 9 12 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A6 11 62936385 62984983 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A7 6 43295694 43305538 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A8 11 62989154 63015839 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC22A9 11 63369789 63410294 FALSE 785 -0.641112705597726 28 63164012 63718714 NA 2 NA NA 2 NA 554702 NA 10 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC23A1 5 139367196 139384553 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC23A2 20 4852356 5010293 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC23A3 2 219161465 219170095 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC24A1 15 65611366 65660995 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC24A2 9 19507452 19786928 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 14 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC24A3 20 19212646 19722937 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 18 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC24A4 14 92322581 92501483 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC24A5 15 48120972 48142672 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A1 22 19175575 19178830 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A10 17 81712236 81721016 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A11 17 4937130 4940251 FALSE 1140 -0.117427632115161 54 4890662 4939168 0.569455701337318 3 NA 0.569455701337318 3 NA 48506 NA 5 7 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A12 2 171784370 171999859 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A13 7 96120220 96322147 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A14 23 130339888 130373361 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A15 13 40789412 40810111 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A16 10 68477999 68527474 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A17 22 40769630 40819399 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A18 22 17563439 17590994 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A19 17 75272981 75289510 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A2 5 141302629 141304045 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A20 3 48856931 48898993 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A21 14 36678431 37172866 FALSE 974 -0.450947578923555 37 36678479 37546904 NA 2 NA NA 2 NA 868425 NA 3 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A22 11 790475 798333 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A23 19 6436079 6465203 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A24 1 108134036 108200849 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A25 9 128068201 128109245 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A26 3 66133610 66388116 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 21 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A27 6 46652915 46678193 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A28 10 99610522 99620609 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A29 14 100291111 100306547 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A3 12 98593591 98606379 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A30 13 45393316 45418455 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A31 4 127730378 127774299 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A32 8 103398635 103415189 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A33 1 9539482 9585179 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A34 1 15736405 15741396 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A35 17 8287763 8295343 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A36 3 140941830 140980961 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A37 8 23528805 23575463 FALSE 587 -0.617990634731161 28 23333640 23673741 NA 2 NA NA 2 NA 340101 NA 3 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A38 3 39383324 39397351 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A39 17 44319625 44324870 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A4 4 185143241 185150382 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A40 7 87833568 87876357 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A41 19 6426037 6433779 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A42 19 19063999 19112888 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A43 23 119399060 119454478 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A44 1 156193932 156212796 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A45 11 65375192 65383701 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A46 5 110738136 110765161 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A47 14 100323337 100330378 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A48 5 135579202 135889770 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A5 23 119468400 119471319 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 6 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A51 9 37879400 37904353 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A52 18 31759562 31760880 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC25A53 23 104099214 104157027 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A1 4 979073 993440 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A10 12 57619527 57626151 FALSE 890 -0.460388414969141 37 57476442 57622884 NA 2 NA NA 2 NA 146442 NA 11 19 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A11 17 80219699 80253500 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 20 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A2 5 149960737 149993455 FALSE 404 -0.510178414155637 34 149597850 150052115 NA 2 NA NA 2 NA 454265 NA 6 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A3 7 107765467 107803225 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 21 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A4 7 107660635 107717809 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 21 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A5 7 103352730 103446177 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 30 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A6 3 48625723 48635493 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A7 8 91209494 91398152 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A8 6 35943514 36024868 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC26A9 1 205913048 205943460 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC27A1 19 17468769 17506168 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC27A2 15 50182196 50236395 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 13 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC27A3 1 153774354 153780157 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC27A4 9 128340646 128361470 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC27A5 19 58479512 58512413 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC27A6 5 128538013 129033642 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 14 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC28A1 15 84884654 84945796 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 19 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC28A2 15 45252230 45277845 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC28A3 9 84275457 84340683 FALSE 673 -0.811842980706275 15 84002240 84725880 0.449390955025597 1 0 0.449390955025597 1 0 723640 1 3 18 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC29A1 6 44219505 44234151 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC29A2 11 66362521 66372214 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC29A3 10 71319258 71381423 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC29A4 7 5274369 5306870 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A1 1 42925375 42959176 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A10 20 46709487 46736347 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A11 22 23856703 23886309 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A12 6 133988697 134052636 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 10 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A13 12 39755021 40106089 FALSE 863 -0.717747500660561 19 38323881 40466037 0.593443012170704 1 0 0.593443012170704 1 0 2142156 1 8 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A14 12 7812512 7891148 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A2 3 170996348 171026750 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A3 12 7919230 7936275 FALSE 841 -0.490562439843472 37 7320781 7922786 NA 2 NA NA 2 NA 602005 NA 11 10 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A4 17 7281667 7288257 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A4RG 20 63739861 63743505 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A5 1 9035107 9088478 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A6 9 133471095 133479137 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A7 1 9003300 9026345 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A8 9 127397138 127408424 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC2A9 4 9771153 10054936 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 20 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A1 1 211571568 211578742 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A10 1 219685427 219958647 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A2 1 26037252 26046133 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A3 2 27253684 27275817 FALSE 123 -0.120982022404975 54 27204482 27258784 0.569455701337318 3 NA 0.569455701337318 3 NA 54302 NA 4 11 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A4 15 45479611 45522807 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A5 5 69093646 69131069 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A6 2 32165841 32224379 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A7 1 100896076 100981753 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A8 8 116950273 117176714 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC30A9 4 41990472 42090457 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC31A1 9 113221562 113264492 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC31A2 9 113150942 113164137 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC32A1 20 38724462 38729372 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC33A1 3 155821024 155854456 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC34A1 5 177379235 177398848 FALSE 419 -0.336668727475554 44 177301736 177509795 0.18904974046126 3 NA 0.18904974046126 3 NA 208059 NA 13 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC34A2 4 25648011 25678748 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC34A3 9 137230757 137236554 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35A1 6 87470623 87512336 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35A2 23 48903180 48911958 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35A3 1 99969351 100035637 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35A4 5 140564456 140569103 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35A5 3 112561709 112585577 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35B1 17 49700934 49709014 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35B2 6 44254096 44257890 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35B3 6 8411463 8435611 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35B4 7 134289332 134317051 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35C1 11 45804072 45813015 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35C2 20 46345980 46364458 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35D1 1 66999332 67054099 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35D2 9 96313444 96383710 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35D3 6 136922264 136925639 FALSE 496 -0.838327102911775 15 135285626 137161755 0.449390955025597 1 0 0.449390955025597 1 0 1876129 1 10 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35E1 19 16549831 16572382 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35E2A 1 1724838 1745999 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35E2B 1 1659529 1692728 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35E3 12 68746106 68793964 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35E4 22 30635652 30669016 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35F1 6 117907526 118317676 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35F2 11 107790991 107928293 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35F3 1 233904933 234324516 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35F4 14 57563922 57982194 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35F5 2 113705011 113756823 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35F6 2 26764284 26781231 FALSE 120 -0.4242175958456 37 25830830 26778513 NA 2 NA NA 2 NA 947683 NA 15 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35G1 10 93893973 93956062 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35G2 3 136818647 136855892 FALSE 288 -0.196524450016373 52 136336203 138077598 0.426118104232275 3 NA 0.426118104232275 3 NA 1741395 NA 8 6 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35G3 17 35192520 35194523 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35G4 18 11609596 11610612 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35G5 8 11330888 11332208 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC35G6 17 7481332 7483496 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC36A1 5 151437046 151492381 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC36A2 5 151314978 151347590 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 12 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC36A3 5 151276762 151303766 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC36A4 11 93144171 93197964 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC37A1 21 42496008 42581440 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC37A2 11 125063067 125090312 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC37A3 7 140293693 140404433 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC37A4 11 119024114 119030906 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A1 12 46183063 46270017 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A10 17 81245000 81295547 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 22 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A11 2 164896186 164955525 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A2 12 46358189 46372867 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A3 3 50205246 50221486 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A4 12 46764761 46832408 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A5 23 48458537 48470256 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A6 14 60981114 61083733 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A7 16 58665109 58685104 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A8 16 84009667 84042636 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC38A9 5 55625845 55773194 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A1 1 153959099 153968184 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A10 2 195575977 195737702 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A11 17 72645949 73092712 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A12 10 17951839 18043292 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A13 11 47407132 47416501 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A14 8 22367249 22434129 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A2 14 20999255 21001871 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A3 19 2732204 2740152 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A4 8 144409742 144416895 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 14 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A5 12 56230049 56237846 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A6 18 36108532 36129385 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 13 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A7 6 33200445 33204439 FALSE 456 -0.636119947778167 28 33164464 33263766 NA 2 NA NA 2 NA 99302 NA 6 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A8 4 102251041 102431258 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC39A9 14 69398015 69462388 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC3A1 2 44275458 44321494 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC3A2 11 62856102 62888875 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC40A1 2 189560579 189583758 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC41A1 1 205789093 205813748 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC41A2 12 104802553 104958744 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC41A3 3 126006355 126101561 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC43A1 11 57484534 57515786 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC43A2 17 1569267 1628886 FALSE 1135 -0.809094444314198 15 1361226 1614943 0.449390955025597 1 0 0.449390955025597 1 0 253717 1 6 16 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC43A3 11 57406954 57427580 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC44A1 9 105244622 105439171 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC44A2 19 10602457 10644559 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC44A3 1 94820342 94895246 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC44A4 6 31863192 31879046 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 20 5 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC44A5 1 75202131 75611116 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC45A1 1 8317826 8344167 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC45A2 5 33944616 33984730 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC45A3 1 205657851 205680459 FALSE 86 1.83191390850558 106 205620109 205679214 0.593481580287395 15 2 0.593481580287395 15 2 59105 13 2 71 18 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC45A4 8 141207166 141308305 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 16 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC46A1 17 28394756 28407197 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC46A2 9 112878920 112890913 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC46A3 13 28700064 28718970 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC47A1 17 19495385 19579034 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC47A2 17 19678288 19718979 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC48A1 12 47753916 47782753 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC49A3 4 681829 689441 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A1 17 44248385 44268141 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 21 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A10 2 161424332 161985282 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 31 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A11 20 3227417 3239559 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 21 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A1AP 2 27663471 27694976 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A2 7 151057210 151076527 FALSE 574 -0.383372083232003 41 150947860 151064227 NA 2 NA NA 2 NA 116367 NA 7 28 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A3 2 219627327 219641980 FALSE 218 -0.971518626236312 11 219598162 221572239 0.593443012170704 1 0 0.593443012170704 1 0 1974077 1 3 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A4 4 71062667 71572087 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A5 2 74216242 74343414 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 28 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A7 3 27372721 27484420 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A8 12 51391317 51515763 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC4A9 5 140360202 140375143 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC50A1 1 155135344 155138857 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC51A 3 196211487 196243178 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC51B 15 65045370 65053396 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC52A1 17 5032600 5052009 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC52A2 8 144354135 144361286 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 19 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC52A3 20 760080 776015 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A1 22 32043032 32113029 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A10 17 18950345 19022595 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 32 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A11 16 24845841 24911628 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A12 11 26667019 26723427 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A2 16 31483002 31490860 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A3 21 34073570 34106262 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A4 22 32218476 32255341 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A5 19 17871973 17895174 FALSE 1318 -0.547059940466149 31 17859952 18149709 NA 2 NA NA 2 NA 289757 NA 7 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A6 2 27199587 27212958 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 18 3 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A7 2 107986523 108013994 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A8 12 101155493 101210407 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC5A9 1 48222685 48248644 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A1 3 10992186 11039249 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A11 3 10816200 10940733 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A12 12 190077 214570 FALSE 827 -0.559311583541843 31 66916 260044 NA 2 NA NA 2 NA 193128 NA 3 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A13 12 220621 262873 FALSE 827 -0.559311583541843 31 66916 260044 NA 2 NA NA 2 NA 193128 NA 3 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A14 23 116436622 116461458 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A15 12 84859488 84913615 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A16 19 49289638 49325225 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A17 1 110150486 110202202 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A18 5 1225355 1246189 FALSE 368 -0.258104479076551 49 876120 1244670 0.331933131290263 3 NA 0.331933131290263 3 NA 368550 NA 6 14 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A19 5 1201595 1225117 FALSE 368 -0.258104479076551 49 876120 1244670 0.331933131290263 3 NA 0.331933131290263 3 NA 368550 NA 6 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A2 16 55655604 55706192 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A20 3 45755450 45796535 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A3 5 1392790 1445430 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A4 17 30194319 30236002 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A5 11 20599400 20659285 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A6 3 14402576 14489349 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A7 5 150189957 150222788 FALSE 406 -0.544352612252152 31 150166967 150399004 NA 2 NA NA 2 NA 232037 NA 5 17 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A8 23 153688099 153696593 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 14 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC6A9 1 43991500 44031467 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A1 13 29509410 29595688 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A10 19 33208664 33225850 FALSE 1328 0.231806776258723 64 33205703 33391273 0.593443012170704 4 NA 0.593443012170704 4 NA 185570 NA 5 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A11 4 138164097 138242349 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A13 8 86214052 86321146 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A14 3 170459584 170586074 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A2 8 17497088 17570573 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A3 23 70925582 70931125 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A4 22 21028718 21032840 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A5 16 87830023 87869488 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A6 16 68264516 68301823 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A6OS 16 68284503 68310946 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A7 14 22773222 22829820 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A8 14 23125295 23183674 FALSE 968 -0.518617454048258 32 21522186 23302525 1 2 1 1 2 1 1780339 1 32 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC7A9 19 32830509 32869766 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC8A1 2 40097270 40611053 FALSE 129 -0.788642704622343 18 39178582 42057703 0.387809979850725 1 0 0.387809979850725 1 0 2879121 1 7 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC8A2 19 47428017 47472168 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC8A3 14 70044217 70189070 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC8B1 12 113298759 113359493 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A1 1 27098815 27166981 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 17 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A2 2 102619707 102711318 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A3 5 470458 524332 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A3R1 17 74748652 74769353 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A3R2 16 2025356 2039026 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 12 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A4 2 102473303 102533972 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A5 16 67237683 67272190 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A6 23 135973841 136047269 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A7 23 46599252 46759172 FALSE 1472 -0.741792499922808 18 45151710 47024874 0.387809979850725 1 0 0.387809979850725 1 0 1873164 1 7 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A8 20 49812713 49892242 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 17 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9A9 3 143265222 143848531 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9B1 4 102885048 103019739 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9B2 4 103019868 103085829 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9C1 3 112140887 112294258 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLC9C2 1 173500464 173603094 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO1A2 12 21264600 21419594 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO1B1 12 21131202 21239246 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 15 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO1B3 12 20810702 20916911 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO1B7 12 20962768 21092745 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 13 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO1C1 12 20695355 20753386 FALSE 856 -0.43353764270457 37 18683248 21462730 NA 2 NA NA 2 NA 2779482 NA 14 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO2A1 3 133928145 134052184 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO2B1 11 75100563 75206549 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO3A1 15 91853695 92172435 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO4A1 20 62642445 62685785 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO4C1 5 102233986 102296549 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO5A1 8 69667047 69835064 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLCO6A1 5 102371782 102499016 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLF1 5 94618347 94739436 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLF2 10 100912569 100965136 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 28 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLFN11 17 35350305 35373701 TRUE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLFN12 17 35411060 35433283 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLFN12L 17 35464249 35537861 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 10 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLFN13 17 35435096 35448837 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 13 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLFN14 17 35548125 35558098 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLFN5 17 35243036 35273655 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLFNL1 1 41015597 41023237 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLIRP 14 77708071 77761104 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLIT1 10 96998038 97185920 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 42 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLIT2 4 20253260 20620561 FALSE 329 0.407505540363132 70 20251908 20620386 0.569287299993522 5 NA 0.569287299993522 5 NA 368478 NA 1 49 4 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLIT3 5 168661733 169301129 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 40 5 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLITRK1 13 83877205 83882393 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLITRK2 23 145817832 145829856 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLITRK3 3 165186720 165197109 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLITRK4 23 143622790 143635777 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLITRK5 13 87672615 87696272 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLITRK6 13 85792787 85806683 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLK 10 103967201 104029233 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLMAP 3 57755450 57929168 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLN 11 107707378 107719693 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLPI 20 45252239 45254564 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLTM 15 58879045 58933653 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 23 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLU7 5 160401641 160421711 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLURP1 8 142740944 142742411 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLURP2 8 142764338 142769844 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLX1A 16 30193887 30197561 FALSE 1098 0.770455142983048 78 30114079 30194719 0.593481580287395 7 NA 0.593481580287395 7 NA 80640 NA 4 4 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLX1B 16 29454501 29458219 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLX4 16 3581181 3611598 TRUE 1078 1.68420833341321 102 3576217 3610947 0.593481580287395 14 NA 0.593481580287395 14 NA 34730 NA 2 37 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SLX4IP 20 10435303 10636829 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD1 4 145481194 145558079 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD2 18 47808957 47931146 TRUE 1256 1.93968678681008 111 47803994 47936233 0.593481580287395 16 NA 0.593481580287395 16 NA 132239 NA 1 126 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD3 15 67063763 67195195 TRUE 1033 2.27967984977662 120 66781110 67200192 0.593481580287395 21 NA 0.593481580287395 21 NA 419082 NA 2 45 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD4 18 51028394 51085045 TRUE 1258 0.452268897061588 70 50986670 52752180 0.569287299993522 5 NA 0.569287299993522 5 NA 1765510 NA 5 26 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD5 5 136132845 136188747 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD6 15 66702228 66782848 FALSE 1032 -0.613130187479146 28 66494532 66716482 NA 2 NA NA 2 NA 221950 NA 5 8 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD7 18 48919853 48952052 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAD9 13 36844831 36920765 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAGP 12 51244558 51270890 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAP1 6 70667776 70862015 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMAP2 1 40344850 40423326 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 13 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCA1 23 129446501 129523500 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCA2 9 1980290 2193624 TRUE 642 -0.969744142087345 10 177800 2007272 0.593443012170704 1 0 0.593443012170704 1 0 1829472 1 8 87 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCA4 19 10960825 11079426 TRUE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 64 6 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCA5 4 143513463 143557486 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCAD1 4 94207611 94291292 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 24 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCAL1 2 216412414 216483053 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCB1 22 23786931 23838008 TRUE 1425 0.860938718657874 80 23780476 23837972 0.593481580287395 7 NA 0.593481580287395 7 NA 57496 NA 3 31 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCC1 3 47585272 47782106 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 28 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCC2 12 56162983 56189567 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 32 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCD1 12 50084972 50100712 FALSE 875 1.49795840187303 98 50085423 50100713 0.593481580287395 12 NA 0.593481580287395 12 NA 15290 NA 1 20 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCD2 17 63832081 63843065 FALSE 1213 0.506756166648449 71 63830187 63942988 0.593481580287395 5 NA 0.593481580287395 5 NA 112801 NA 10 14 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCD3 7 151238764 151277896 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMARCE1 17 40624962 40648864 TRUE 1182 1.91181667479361 111 40620051 40653758 0.593481580287395 16 NA 0.593481580287395 16 NA 33707 NA 2 54 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMC1A 23 53374149 53422728 TRUE 1483 2.99002089420999 134 53373363 53379616 0.593481580287395 35 NA 0.593481580287395 35 NA 6253 NA 1 52 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMC1B 22 45344063 45413619 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMC2 9 104094260 104141417 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMC3 10 110567691 110604636 TRUE 743 0.494705480005172 71 110562779 110821845 0.593481580287395 5 NA 0.593481580287395 5 NA 259066 NA 2 38 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMC4 3 160399274 160434962 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 26 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMC5 9 70258962 70354888 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 27 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMC6 2 17663812 17800242 FALSE 113 -0.742826346277415 18 16552911 17753891 0.387809979850725 1 0 0.387809979850725 1 0 1200980 1 5 66 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMCHD1 18 2655738 2805017 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 49 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMCO1 3 196506877 196515366 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMCO2 12 27466810 27502185 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 8 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMCO3 12 14804650 14814182 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMCO4 11 93478472 93543508 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMCP 1 152878317 152885047 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMCR8 17 18315310 18328055 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 12 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMDT1 22 42079691 42084284 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMG1 16 18804853 18926454 TRUE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 71 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMG5 1 156249224 156282825 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 24 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMG6 17 2059839 2303771 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 27 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMG7 1 183472216 183598246 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 43 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMG8 17 59209400 59215247 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 13 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMG9 19 43727992 43754990 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM1 1 3772761 3775982 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM10 23 134990938 134992473 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM10L1 12 11171222 11176016 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM10L2A 23 135421943 135428074 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM10L2B 23 135094987 135098634 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM12 1 34712737 34859816 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM13 6 11094033 11138733 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM14 4 39546330 39639090 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM15 5 61157709 61162474 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM17 19 56643145 56655766 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM18 8 30638600 30646064 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 1 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM19 8 42541155 42555193 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM2 13 44143543 44161257 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM20 4 25861830 25929874 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM21 18 75409476 75427703 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM22 16 4788397 4796491 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM23 5 171782432 171796126 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM24 19 3473986 3480542 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM26 20 18567347 18569563 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM27 9 32551144 32568621 FALSE 659 -0.671695704683809 25 32466279 32630114 0.276933305076759 1 0 0.276933305076759 1 0 163835 1 5 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM29 6 34246380 34249470 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM3 5 150777946 150796734 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 1 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM30 7 113116718 113118613 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM31 4 164754064 164803795 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM32 5 136191468 136193134 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM35 11 118003634 118088299 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 6 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM4 3 52534013 52579237 FALSE 260 -0.548533387558164 31 52412304 52540384 NA 2 NA NA 2 NA 128080 NA 7 24 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM5 17 75633434 75641404 FALSE 1229 -0.166870124513272 52 75622079 75765208 0.426118104232275 3 NA 0.426118104232275 3 NA 143129 NA 7 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM6 17 75646243 75647977 FALSE 1229 -0.166870124513272 52 75622079 75765208 0.426118104232275 3 NA 0.426118104232275 3 NA 143129 NA 7 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM7 19 16630751 16660442 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM8 6 87322583 87399749 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMIM9 23 154823348 154834662 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMKR1 7 129502479 129512932 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 2 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMLR1 6 130827406 130837135 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 2 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMN1 5 70925030 70953942 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMN2 5 70049612 70078522 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMNDC1 10 110290730 110304951 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMO 7 129188872 129213545 FALSE 561 1.88436217491049 109 129166840 129213539 0.593481580287395 16 NA 0.593481580287395 16 NA 46699 NA 2 23 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMOC1 14 69854131 70032366 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMOC2 6 168441151 168673445 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMOX 20 4120980 4187747 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 10 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMPD1 11 6390431 6394998 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMPD2 6 109440763 109443919 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMPD3 16 68358325 68448688 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMPD4 2 130151392 130182750 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMPDL3A 6 122789049 122809720 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMPDL3B 1 27934993 27959157 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMPX 23 21705972 21758163 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMR3A 4 70360761 70367158 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMR3B 4 70370093 70390244 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMS 23 21940573 21994835 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMTN 22 31064105 31104757 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 25 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMTNL1 11 57542641 57550274 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMTNL2 17 4583999 4608319 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMU1 9 33041764 33076659 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMUG1 12 54121277 54189008 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMURF1 7 99027438 99144100 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMURF2 17 64542295 64662068 FALSE 1215 -0.310157730541577 44 64323838 64858765 0.18904974046126 3 NA 0.18904974046126 3 NA 534927 NA 7 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMYD1 2 88067780 88113387 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 10 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMYD2 1 214281102 214337131 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMYD3 1 245749342 246507312 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMYD4 17 1779485 1830634 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 15 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SMYD5 2 73214222 73227237 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAI1 20 49982999 49988886 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAI2 8 48917604 48921740 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAI3 16 88677682 88686493 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAP23 15 42491233 42545356 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAP25 20 10218830 10307418 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAP29 22 20858983 20891218 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 6 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAP47 1 227728539 227781231 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAP91 6 83552880 83709691 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 30 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAPC1 14 61762357 61796428 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAPC2 19 7920316 7923250 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAPC3 9 15422704 15465953 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAPC4 9 136375577 136400168 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAPC5 15 66490135 66497813 FALSE 1031 1.71408981478719 103 66386896 66491583 0.593481580287395 14 NA 0.593481580287395 14 NA 104687 NA 2 8 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNAPIN 1 153658654 153661830 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNCA 4 89724099 89838315 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNCAIP 5 122311354 122464219 FALSE 391 1.02962638304894 83 122077011 122464187 0.593481580287395 8 NA 0.593481580287395 8 NA 387176 NA 4 27 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNCB 5 176620084 176630556 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNCG 10 86958618 86963260 FALSE 731 -0.570525243628977 31 86945174 87862077 NA 2 NA NA 2 NA 916903 NA 12 6 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SND1 7 127652180 128092609 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 33 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNED1 2 240998838 241095568 FALSE 231 -0.903438797306723 12 240126780 241126203 0.593443012170704 1 0 0.593443012170704 1 0 999423 1 17 40 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNF8 17 48929316 48945117 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNHG28 1 159834474 159873053 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNIP1 1 37534449 37554344 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNN 16 11668414 11679159 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNORC 2 232857270 232878708 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNPH 20 1266280 1309328 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRK 3 43286512 43424764 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRNP200 2 96274336 96305515 FALSE 155 -0.549243709745075 30 96267376 97702748 0.398146319473827 2 0 0.398146319473827 2 0 1435372 2 21 47 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRNP25 16 53010 57669 FALSE 1062 -0.731082743335478 21 47602 286660 0.328777186374237 1 0 0.328777186374237 1 0 239058 1 16 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRNP27 2 69893560 69905575 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRNP35 12 123457641 123473154 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRNP40 1 31259568 31296782 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRNP48 6 7590199 7611967 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRNP70 19 49085419 49108605 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPA 19 40750637 40765389 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPA1 15 101281510 101295282 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPB 20 2461634 2470853 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPB2 20 16729961 16742563 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPC 6 34757406 34773794 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPD1 18 21612267 21633524 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPD2 19 45687454 45692569 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPD3 22 24555503 24609980 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPE 1 203861603 203870550 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPF 12 95858928 95903828 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPG 2 70281362 70293771 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNRPN 15 24823637 24978723 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNTA1 20 33407955 33443892 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNTB1 8 120535745 120813273 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNTB2 16 69187129 69309052 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNTG1 8 49909789 50796691 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNTG2 2 950868 1367613 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNTN 3 63652668 63679020 FALSE 263 -0.35964030579044 41 62532938 63864622 NA 2 NA NA 2 NA 1331684 NA 6 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNU13 22 41673930 41690504 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNUPN 15 75598083 75626469 FALSE 1040 -0.419253708499368 37 75468964 75843853 NA 2 NA NA 2 NA 374889 NA 7 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNURF 15 24954986 24977850 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNW1 14 77717599 77761207 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX1 15 64094123 64146090 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 16 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX10 7 26291895 26374329 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX11 17 48103357 48123074 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX12 23 71056332 71073426 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX13 7 17790761 17940501 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX14 6 85505496 85594156 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 31 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX15 11 65027408 65040572 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX16 8 81799581 81842866 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX17 2 27370496 27377533 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX18 5 54517759 54546585 FALSE 376 -0.4975923743033 32 45262797 56556111 1 2 1 1 2 1 11293314 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX19 11 130875436 130916509 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 20 10 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX2 5 122774996 122830108 FALSE 392 -0.336901155452395 44 122775231 124648866 0.18904974046126 3 NA 0.18904974046126 3 NA 1873635 NA 7 16 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX20 16 50666300 50681353 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX21 20 45833810 45843275 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX22 15 64151715 64157481 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX24 5 122843439 123029354 FALSE 392 -0.336901155452395 44 122775231 124648866 0.18904974046126 3 NA 0.18904974046126 3 NA 1873635 NA 7 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX25 4 185204237 185370185 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX27 1 151612006 151699091 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX29 16 11976737 12574289 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX3 6 108211222 108261260 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX30 9 112750838 112881671 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX31 8 100572882 100663415 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 14 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX32 11 65833641 65856896 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 16 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX33 15 75647906 75662301 FALSE 1040 -0.419253708499368 37 75468964 75843853 NA 2 NA NA 2 NA 374889 NA 7 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX4 3 125446644 125520197 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX5 20 17941597 17968980 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX6 14 34561094 34630183 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX7 1 98661701 98760500 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX8 7 2251770 2354318 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SNX9 6 157700387 157945077 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOAT1 1 179293714 179358680 FALSE 74 -0.589588184480294 28 179302743 179846780 NA 2 NA NA 2 NA 544037 NA 6 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOAT2 12 53103518 53124538 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOBP 6 107489958 107660167 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOCS1 16 11254405 11256200 TRUE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOCS2 12 93569814 93583487 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOCS3 17 78356778 78360077 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOCS4 14 55027230 55049488 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOCS5 2 46698952 46780245 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOCS6 18 70288901 70330200 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOCS7 17 38352228 38405593 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOD1 21 31659622 31668931 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOD2 6 159669057 159762529 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 17 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOD3 4 24789912 24800842 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOGA1 20 36777442 36863686 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOGA3 6 127472794 127519191 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOHLH1 9 135693407 135699528 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOHLH2 13 36168208 36214615 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SON 21 33542618 33577481 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 36 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORBS1 10 95311771 95561414 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 35 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORBS2 4 185585444 185956652 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 33 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORBS3 8 22544986 22575788 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORCS1 10 106573663 107164534 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 30 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORCS2 4 7192538 7742836 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 36 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORCS3 10 104641101 105265235 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORD 15 45023104 45077185 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORL1 11 121452203 121633693 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 50 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SORT1 1 109309568 109397951 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOS1 2 38981396 39124345 FALSE 128 1.03894162728697 83 38962186 39121004 0.593481580287395 8 NA 0.593481580287395 8 NA 158818 NA 2 57 2 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOS2 14 50117120 50231558 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOST 17 43753731 43758788 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOSTDC1 7 16461481 16530580 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOWAHA 5 132813587 132816797 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOWAHB 4 76894928 76898147 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOWAHC 2 109614334 109618990 FALSE 164 -0.694498554222552 25 108786845 111049217 0.276933305076759 1 0 0.276933305076759 1 0 2262372 1 16 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOWAHD 23 119758613 119760164 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX1 13 112067647 112070488 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX10 22 37970686 37987422 FALSE 1439 2.00232670539799 113 37970925 37987398 0.593481580287395 17 NA 0.593481580287395 17 NA 16473 NA 2 22 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX11 2 5692667 5701385 FALSE 109 2.14700142723825 118 5692535 5701260 0.593481580287395 19 NA 0.593481580287395 19 NA 8725 NA 1 33 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX12 20 325595 330224 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX13 1 204073115 204127743 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX14 3 137764284 137766338 FALSE 288 -0.196524450016373 52 136336203 138077598 0.426118104232275 3 NA 0.426118104232275 3 NA 1741395 NA 8 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX15 17 7588178 7590170 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX17 8 54457935 54460888 TRUE 616 2.05023367253777 115 54452994 54461327 0.593481580287395 18 NA 0.593481580287395 18 NA 8333 NA 1 10 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX18 20 64047582 64049641 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX2 3 181711924 181714436 FALSE 298 2.78564689678763 128 181712027 181714390 0.593481580287395 31 NA 0.593481580287395 31 NA 2363 NA 1 10 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX21 13 94709622 94712399 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX3 23 140502985 140505116 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX30 5 157625679 157671480 FALSE 410 -0.452263427994106 37 157138840 157648838 NA 2 NA NA 2 NA 509998 NA 10 11 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX4 6 21592768 21598619 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX5 12 23529500 24562544 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 18 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX6 11 15966449 16739591 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX7 8 10723768 10730512 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX8 16 981808 986979 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SOX9 17 72121020 72126420 TRUE 1224 1.32083798162153 90 70132160 72126280 0.593481580287395 10 NA 0.593481580287395 10 NA 1994120 NA 3 17 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP1 12 53380176 53416446 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP100 2 230415942 230544090 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 33 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP110 2 230167293 230225729 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 21 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP140 2 230203110 230313215 TRUE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 37 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP140L 2 230327184 230403732 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP2 17 47896150 47928957 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 11 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP3 2 173906459 173965702 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP4 7 21428034 21514822 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP5 2 170715351 170718078 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP6 17 47844908 47855874 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP7 12 53326575 53345315 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP8 7 20782283 20786886 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SP9 2 174334946 174338492 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPA17 11 124673798 124697518 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAAR 9 35909483 35937153 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPACA1 6 88047789 88066832 FALSE 474 -0.812171202822087 15 87337125 88963353 0.449390955025597 1 0 0.449390955025597 1 0 1626228 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPACA3 17 32970376 32997877 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPACA4 19 48606743 48607714 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPACA5B 23 48130657 48132613 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPACA6 19 51689128 51712387 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPACA7 13 112376319 112434689 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPACA9 9 132878027 132890201 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG1 8 100157906 100259278 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 23 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG11A 8 7847876 7868867 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG11B 8 7442684 7463674 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG16 2 213284379 214410501 FALSE 211 -0.404833419723938 41 211387031 214575792 NA 2 NA NA 2 NA 3188761 NA 4 16 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG17 1 117953861 118185223 FALSE 46 -0.673684454186075 25 117628427 119415546 0.276933305076759 1 0 0.276933305076759 1 0 1787119 1 7 55 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG4 20 35615892 35621049 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG5 17 28577565 28599279 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 27 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG6 10 22345445 22454224 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG7 17 4959226 4967872 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG8 9 35808045 35812272 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAG9 17 50962174 51120865 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 34 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAM1 7 123925237 123971414 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPANXC 23 141241463 141242496 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 3 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPANXD 23 141697411 141698739 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPANXN1 23 145246828 145256112 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPANXN2 23 143711955 143721423 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPANXN3 23 143508735 143517475 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPANXN4 23 143025918 143034702 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPANXN5 23 52796144 52798101 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPARC 5 151661096 151687165 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPARCL1 4 87473335 87531061 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 14 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPART 13 36301638 36370180 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPAST 2 32063547 32157637 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA1 1 84506300 84566194 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA12 3 57060441 57075432 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA13 13 23979805 24307074 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 25 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA16 3 172889358 173141268 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA17 1 217631324 217871696 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA18 4 52051331 52097292 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA19 11 133840631 133845538 FALSE 824 -1.18865139333812 5 132212194 133844627 0.40635440857188 0 0 0.40635440857188 0 0 1632433 0 3 6 2 TRUE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA2 20 49903391 49915508 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA20 17 50543058 50555852 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA21 1 16387117 16437424 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 16 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA22 17 3440019 3513852 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA24 5 139396563 139404088 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA25 20 45886489 45887635 FALSE 1386 0.148259010786639 63 45877825 45895143 0.54220702508464 4 NA 0.54220702508464 4 NA 17318 NA 5 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA2L 16 89696343 89701705 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA3 2 230990324 231025055 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31A1 9 39355669 39361959 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31A3 9 66986304 66992583 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31A6 9 42183659 42189882 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31A7 9 61190003 61196280 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31D1 9 81988772 81995256 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31D3 9 81943586 81950038 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31D4 9 81928514 81934948 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA31E1 9 87882826 87888899 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA32 17 45254393 45262112 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA33 16 89657802 89671272 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA4 4 176184638 176195671 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA45 1 212830141 212847649 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA46 1 162373203 162376870 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA48 7 50096036 50159830 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 11 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA5 4 122923074 123319450 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA5L1 15 45402331 45421419 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA6 1 48295372 48472208 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA6L 9 4553386 4666674 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 28 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA7 14 88384924 88470350 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA8 15 96783389 96785615 FALSE 1059 -0.999534667247782 11 93072984 98485893 0.593443012170704 1 0 0.593443012170704 1 0 5412909 1 6 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATA9 5 95652181 95698711 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATC1 8 144012414 144047085 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATC1L 21 46161148 46184476 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATS1 6 44342660 44377167 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 8 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATS2 12 49366584 49527424 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPATS2L 2 200305881 200482263 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPC24 19 11131520 11155808 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPC25 2 168834132 168913371 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 24 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPCS1 3 52704955 52711146 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPCS2 11 74949247 74979031 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPCS3 4 176319964 176332245 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDEF 6 34537802 34556333 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDL1 5 169583634 169604778 FALSE 414 -0.508574938422881 34 168670034 171298807 NA 2 NA NA 2 NA 2628773 NA 11 13 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYA 2 28782517 28850611 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYC 11 65170154 65173244 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE1 7 44000889 44010122 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE16 7 76531319 76541459 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE2 7 102551232 102562308 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE2B 7 102650325 102661398 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 2 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE3 7 100307702 100322196 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE4 17 8753106 8758559 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE5 7 75493625 75504304 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPDYE6 7 102347206 102356444 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 4 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPECC1 17 20009344 20319026 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPECC1L 22 24270817 24417740 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPECC1L-ADORA2A 22 24270898 24442356 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPEF1 20 3777504 3781448 FALSE 1365 -0.214148751992192 49 3660680 4725072 0.331933131290263 3 NA 0.331933131290263 3 NA 1064392 NA 16 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPEF2 5 35617844 35814611 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 42 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPEG 2 219434846 219498287 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 68 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPEM1 17 7420360 7421632 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPEM2 17 7425615 7427568 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPEN 1 15847864 15940460 TRUE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 61 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPERT 13 45702311 45714559 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPESP1 15 68818221 68946811 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPG11 15 44562696 44663678 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 46 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPG21 15 64963021 64990310 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPG7 16 89490719 89557768 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPHAR 1 229304857 229305504 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPHK1 17 76376584 76387860 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPHK2 19 48619291 48630717 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPHKAP 2 227979950 228181645 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 27 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPI1 11 47354860 47378576 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIB 19 50418938 50431313 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIC 12 101475421 101486997 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPICE1 3 113442718 113515187 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIDR 8 47260575 47736306 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIN1 9 88388419 88478694 FALSE 678 -0.69263286868029 25 88426507 90613824 0.276933305076759 1 0 0.276933305076759 1 0 2187317 1 9 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIN2A 23 57134530 57137625 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIN2B 23 57118551 57121546 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIN3 23 56818298 56995827 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIN4 23 63347228 63351344 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINDOC 11 63813388 63827718 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK1 5 147824568 147831786 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK13 5 148268180 148286254 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK14 5 148169733 148175398 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK2 4 56809860 56821742 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK4 9 33218365 33248567 FALSE 661 -0.516464344231861 34 32973553 33567301 NA 2 NA NA 2 NA 593748 NA 12 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK5 5 148025683 148137289 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 34 14 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK6 5 148202794 148215137 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK7 5 148312419 148315922 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK8 3 48306842 48328341 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINK9 5 148321203 148339849 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINT1 15 40844018 40858207 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 11 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINT2 19 38244035 38292614 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINT3 20 45512461 45515624 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPINT4 20 45722351 45725830 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIRE1 18 12446512 12658134 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPIRE2 16 89818179 89871319 FALSE 1130 -0.811934353532039 15 89828618 89910636 0.449390955025597 1 0 0.449390955025597 1 0 82018 1 2 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPN 16 29662979 29670876 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPNS1 16 28974221 28984548 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPNS2 17 4498838 4539035 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPNS3 17 4433688 4488208 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPO11 20 57329759 57343994 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPOCD1 1 31790422 31816051 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 22 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPOCK1 5 136975298 137598379 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPOCK2 10 72059035 72089032 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPOCK3 4 166733384 167234796 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPON1 11 13962689 14267884 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPON2 4 1166932 1208962 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPOP 17 49598884 49678234 TRUE 1199 0.637650451544936 75 49502223 49646629 0.593481580287395 6 NA 0.593481580287395 6 NA 144406 NA 3 28 3 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPOPL 2 138501801 138573547 FALSE 175 -0.921750094504028 13 137170791 138780250 0.522719719214577 1 0 0.522719719214577 1 0 1609459 1 4 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPOUT1 9 128819651 128829821 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPP1 4 87975650 87983426 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPP2 2 234050679 234077134 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPPL2A 15 50702266 50765808 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPPL2B 19 2328615 2354806 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPPL2C 17 45844835 45847072 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPPL3 12 120762510 120904371 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPR 2 72887360 72892158 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRED1 15 38252326 38357249 TRUE 1008 0.519137793744102 71 38247853 38351031 0.593481580287395 5 NA 0.593481580287395 5 NA 103178 NA 1 39 11 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRED2 2 65310851 65432637 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRED3 19 38388421 38399587 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRN 10 133420666 133424572 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR1A 1 152985231 152985500 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR1B 1 153031202 153032900 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR2A 1 153056113 153057537 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR2B 1 153070224 153070840 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR2D 1 153039725 153041931 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR2E 1 153093135 153106184 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR2F 1 153112114 153113515 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR2G 1 153149582 153150869 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR3 1 153001747 153003856 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRR4 1 152970666 152972574 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 1 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRTN 1 231337104 231355023 TRUE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRY1 4 123396795 123403760 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRY2 13 80335976 80340951 FALSE 950 -0.663373280232457 25 75804356 91728578 0.276933305076759 1 0 0.276933305076759 1 0 15924222 1 19 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRY4 5 142310427 142326455 FALSE 401 1.92805410531954 111 142314231 142873518 0.593481580287395 16 NA 0.593481580287395 16 NA 559287 NA 3 5 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRYD3 12 53064316 53079420 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRYD4 12 56468567 56479707 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPRYD7 13 49912706 49936490 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPSB1 1 9292880 9369532 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPSB2 12 6870935 6889358 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPSB3 16 1776712 1793700 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPSB4 3 141051402 141148611 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 4 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTA1 1 158610706 158686715 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 60 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTAN1 9 128552558 128633662 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 60 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTB 14 64746283 64879907 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 48 9 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTBN1 2 54456285 54671445 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 47 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTBN2 11 66685248 66729226 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 48 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTBN4 19 40466241 40576464 FALSE 1336 -0.500922515518535 34 40321924 41203678 NA 2 NA NA 2 NA 881754 NA 27 49 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTBN5 15 41848144 41894077 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 77 7 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTLC1 9 92000087 92115384 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTLC2 14 77505997 77616773 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTLC3 20 13008979 13169103 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTSSA 14 34432789 34462356 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTSSB 3 161344792 161372880 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTY2D1 11 18606401 18634791 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPTY2D1OS 11 18588781 18610255 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPX 12 21526307 21541249 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SPZ1 5 80319625 80321842 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SQLE 8 124998497 125022283 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SQOR 15 45631148 45691294 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SQSTM1 5 179806398 179838078 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRA1 5 140537340 140558252 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRARP 1 16004236 16008807 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRBD1 2 45388680 45612165 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRC 20 37344685 37406050 FALSE 1375 1.88390008373875 109 37316354 37519121 0.593481580287395 16 NA 0.593481580287395 16 NA 202767 NA 3 31 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRCAP 16 30698209 30741409 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 53 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRCIN1 17 38530016 38605930 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRD5A1 5 6633343 6674386 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRD5A2 2 31522480 31581067 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRD5A3 4 55346109 55373096 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SREBF1 17 17810399 17837002 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SREBF2 22 41833079 41907308 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SREK1 5 66139971 66183615 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SREK1IP1 5 64718144 64768685 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRF 6 43171299 43181507 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRFBP1 5 121961961 122075570 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRGAP1 12 63844293 64162221 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRGAP2 1 206203345 206464443 FALSE 87 -0.629442663472468 28 205679579 206458925 NA 2 NA NA 2 NA 779346 NA 12 25 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRGAP2B 1 144887265 145095528 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRGAP2C 1 121184810 121392822 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRGAP3 3 8980591 9363053 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRGN 10 69088106 69104811 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRI 7 88205118 88226993 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRL 16 4189374 4242080 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRM 1 11054584 11060024 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRMS 20 63540810 63547504 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRP14 15 40035739 40039188 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRP19 5 112861188 112898371 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRP54 14 34981957 35029567 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRP68 17 76038775 76072653 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 16 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRP72 4 56467336 56503681 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRP9 1 225777813 225790466 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRPK1 6 35832966 35921342 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRPK2 7 105110704 105399308 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 30 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRPK3 23 153776412 153785732 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 23 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRPRA 11 126262919 126269144 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRPRB 3 133784033 133825772 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRPX 23 38149336 38220924 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRPX2 23 100644166 100675788 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRR 17 2303383 2325260 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRRD 22 26483877 26494658 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRRM1 1 24631716 24673267 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRRM2 16 2752329 2772538 FALSE 1075 -1.0134415309646 11 2682644 2760334 0.593443012170704 1 0 0.593443012170704 1 0 77690 1 3 41 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRRM3 7 76201900 76287288 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRRM4 12 118981495 119163051 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRRM5 19 43596617 43614497 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRRT 7 100875111 100888664 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 21 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF1 17 58003360 58007346 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF10 1 23964804 23980927 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF11 1 70205682 70253052 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF12 6 89095959 89118081 FALSE 475 1.87914654836112 109 89080750 89098618 0.593481580287395 16 NA 0.593481580287395 16 NA 17868 NA 2 6 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF2 17 76734115 76737374 FALSE 1234 2.16554578909691 118 76733266 76737321 0.593481580287395 19 NA 0.593481580287395 19 NA 4055 NA 4 12 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF3 6 36594353 36605600 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF4 1 29147743 29181987 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF5 14 69726900 69772005 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF6 20 43457928 43464247 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF7 2 38743599 38751494 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF8 11 95067197 95071224 FALSE 809 -0.391802641190842 38 94496761 100992623 1 2 1 1 2 1 6495862 1 20 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRSF9 12 120461668 120469793 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SRXN1 20 646615 653370 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SS18 18 26016253 26091217 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SS18L1 20 62143795 62182484 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SS18L2 3 42581840 42595114 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSB 2 169791933 169812064 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSBP1 7 141738321 141787922 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 14 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSBP2 5 81413021 81751797 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSBP3 1 54225432 54413479 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSBP4 19 18418864 18434562 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSC4D 7 76389334 76409695 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSC5D 19 55488404 55519098 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 28 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSH1 12 108778192 108857590 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSH2 17 29625938 29930276 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 29 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSH3 11 67303448 67312607 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSMEM1 7 130206344 130216844 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSNA1 9 137188647 137190370 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSPN 12 26121991 26299290 FALSE 860 -0.331371321454595 44 25251971 26556343 0.18904974046126 3 NA 0.18904974046126 3 NA 1304372 NA 5 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSPO 7 149776042 149833979 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 120 11 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSR1 6 7268306 7347446 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSR2 1 156009048 156020959 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSR3 3 156540140 156555184 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSR4 23 153793516 153798505 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSRP1 11 57325985 57335877 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSSCA1 11 65570430 65573942 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SST 3 187668906 187670399 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSTR1 14 38207999 38213067 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSTR2 17 73165012 73176633 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSTR3 22 37204238 37212322 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 6 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSTR4 20 23035386 23036812 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSTR5 16 1078781 1080142 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSU72 1 1541673 1574869 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSUH2 3 8619400 8745040 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSX1 23 48255317 48267444 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSX2IP 1 84643707 84690803 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSX3 23 48346428 48356707 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSX4 23 48383516 48393347 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSX4B 23 48402078 48411910 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSX5 23 48186220 48196763 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SSX7 23 52644090 52654900 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST13 22 40824535 40857022 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST14 11 130159562 130210376 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 22 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST18 8 52110839 52460959 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 26 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST20 15 79898840 79923702 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 1 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST20-MTHFS 15 79845150 79923754 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST3GAL1 8 133454848 133571940 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST3GAL2 16 70375978 70439237 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST3GAL3 1 43705824 43931165 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST3GAL4 11 126355640 126440344 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 20 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST3GAL5 2 85837120 85905199 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST3GAL6 3 98732236 98821201 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST5 11 8693351 8910951 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 23 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GAL1 3 186930485 187078553 FALSE 312 -0.557955732705144 31 186790407 187702068 NA 2 NA NA 2 NA 911661 NA 9 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GAL2 2 106801600 106887108 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 10 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GALNAC1 17 76624761 76643838 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GALNAC2 17 76565379 76586956 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GALNAC3 1 76074719 76634601 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GALNAC4 9 127907886 127917038 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GALNAC5 1 76867441 77065711 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST6GALNAC6 9 127885321 127905408 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST7 7 116953238 117230103 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST7L 1 112523518 112620825 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST8SIA1 12 22063773 22437041 FALSE 858 -0.506997709431296 34 21508410 25194878 NA 2 NA NA 2 NA 3686468 NA 15 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST8SIA2 15 92393828 92468728 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST8SIA3 18 57350813 57371731 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST8SIA4 5 100806935 100903266 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST8SIA5 18 46667821 46759257 FALSE 1255 -0.672840215061234 25 45624833 47249136 0.276933305076759 1 0 0.276933305076759 1 0 1624303 1 22 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ST8SIA6 10 17318383 17454330 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAB1 3 52495338 52524495 FALSE 260 -0.548533387558164 31 52412304 52540384 NA 2 NA NA 2 NA 128080 NA 7 68 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAB2 12 103587273 103766727 FALSE 907 -0.595500763421402 28 102843745 103688153 NA 2 NA NA 2 NA 844408 NA 4 70 7 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAC 3 36380344 36548007 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAC2 17 39210536 39225872 FALSE 1170 -0.627734421691597 27 38335296 39451070 1 2 1 1 2 1 1115774 1 23 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAC3 12 57243453 57251193 FALSE 888 -0.337650994999425 44 57138490 57456829 0.18904974046126 3 NA 0.18904974046126 3 NA 318339 NA 9 12 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAG1 3 136336233 136752403 TRUE 288 -0.196524450016373 52 136336203 138077598 0.426118104232275 3 NA 0.426118104232275 3 NA 1741395 NA 8 50 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAG2 23 123960212 124422664 TRUE 1508 1.35760793990309 91 123860137 124094006 0.593481580287395 11 NA 0.593481580287395 11 NA 233869 NA 2 116 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAG3 7 100177563 100221488 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 39 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAM 10 17644125 17715914 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAM2 2 152116801 152175992 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAMBP 2 73828916 73873659 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAMBPL1 10 88879734 88975153 FALSE 734 -0.724629386017874 21 88275049 88961103 0.328777186374237 1 0 0.328777186374237 1 0 686054 1 9 23 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAP1 4 67558728 67607337 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAP2 19 4324043 4342786 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 12 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAR 8 38143649 38151265 FALSE 605 -0.914445724263081 13 37872789 38270250 0.522719719214577 1 0 0.522719719214577 1 0 397461 1 12 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD10 11 72754729 72793681 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD13 13 33103135 33350630 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD3 17 39637065 39663484 FALSE 1173 -0.600812074431575 28 39564387 39699581 NA 2 NA NA 2 NA 135194 NA 8 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD3NL 7 38178222 38230671 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD4 5 111496033 111512590 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD5 15 81309053 81324183 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD6 18 54324358 54357964 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD7 2 96184859 96208825 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD8 23 68647666 68725842 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STARD9 15 42575659 42720981 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 71 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAT1 2 190964358 191020960 FALSE 197 -0.634190880282039 28 190057538 191008950 NA 2 NA NA 2 NA 951412 NA 9 23 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAT2 12 56341597 56360155 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAT3 17 42313324 42388568 FALSE 1186 1.42274572013473 95 42199311 42388555 0.593481580287395 11 NA 0.593481580287395 11 NA 189244 NA 3 33 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAT4 2 191029576 191151596 FALSE 198 0.29826028985368 67 191009941 191151583 0.593443012170704 4 NA 0.593443012170704 4 NA 141642 NA 2 27 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAT5A 17 42287547 42311943 FALSE 1186 1.42274572013473 95 42199311 42388555 0.593481580287395 11 NA 0.593481580287395 11 NA 189244 NA 3 28 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAT5B 17 42199168 42276707 FALSE 1186 1.42274572013473 95 42199311 42388555 0.593481580287395 11 NA 0.593481580287395 11 NA 189244 NA 3 31 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAT6 12 57095408 57132139 FALSE 887 2.08690517988165 117 57089277 57129157 0.593481580287395 18 NA 0.593481580287395 18 NA 39880 NA 3 31 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STATH 4 69995930 70002570 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAU1 20 49113339 49188367 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STAU2 8 73420369 73747708 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STBD1 4 76306026 76311599 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STC1 8 23841915 23854807 FALSE 588 1.4180746303565 95 23675791 23844942 0.593481580287395 11 NA 0.593481580287395 11 NA 169151 NA 3 5 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STC2 5 173314713 173329503 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STEAP1 7 90154375 90164829 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STEAP1B 7 22419444 22727613 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STEAP2 7 90167590 90238137 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 9 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STEAP3 2 119223831 119265652 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STEAP4 7 88270892 88306891 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STH 17 45999250 45999694 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STIL 1 47250139 47314147 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STIM1 11 3854527 4093210 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STIM2 4 26857678 27025381 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STIMATE 3 52836219 52897596 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STIP1 11 64185272 64204543 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK10 5 172042073 172188386 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK11 19 1177558 1228435 TRUE 1270 1.76524958127595 105 1172666 1228190 0.593481580287395 14 NA 0.593481580287395 14 NA 55524 NA 2 24 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK11IP 2 219597860 219616451 FALSE 218 -0.971518626236312 11 219598162 221572239 0.593443012170704 1 0 0.593443012170704 1 0 1974077 1 3 27 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK16 2 219245455 219250337 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK17A 7 43582758 43650713 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK17B 2 196133566 196176503 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK19 6 31971091 31982821 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK24 13 98445185 98577940 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 16 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK25 2 241492674 241509730 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK26 23 132023265 132075943 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK3 8 98371228 98942827 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 18 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK31 7 23710167 23832513 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK32A 5 147234963 147387852 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK32B 4 5051442 5500998 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 12 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK32C 10 132207492 132331847 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 18 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK33 11 8391868 8594289 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 15 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK35 20 2101611 2177038 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK36 2 218672026 218702716 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 28 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK38 6 36493892 36547470 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK38L 12 27243968 27325959 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK39 2 167954020 168248141 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK4 20 44966474 45079959 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 12 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STK40 1 36339624 36385896 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 24 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STKLD1 9 133376367 133406096 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STMN1 1 25884181 25906991 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STMN2 8 79610814 79666175 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STMN3 20 63639705 63657682 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STMN4 8 27235323 27258420 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STMND1 6 17102258 17131372 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STMP1 7 135662496 135693418 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STN1 10 103882542 103918205 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STOM 9 121338988 121370304 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STOML1 15 73978923 73994622 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STOML2 9 35099776 35103195 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STOML3 13 38965925 38991066 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STON1 2 48529383 48598513 FALSE 136 -0.842193967001169 15 48346226 48725689 0.449390955025597 1 0 0.449390955025597 1 0 379463 1 7 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STON1-GTF2A1L 2 48529925 48776517 FALSE 136 -0.842193967001169 15 48346226 48725689 0.449390955025597 1 0 0.449390955025597 1 0 379463 1 7 38 6 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STON2 14 81260656 81436465 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STOX1 10 68827541 68895432 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STOX2 4 183797692 184023526 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STPG1 1 24356999 24416934 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STPG2 4 97184093 98143240 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STPG3 9 137251261 137253483 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STPG4 2 47045538 47155378 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRA6 15 74179466 74212267 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRA8 7 135231979 135258492 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRADA 17 63682336 63741986 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 27 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRADB 2 201387858 201480846 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRAP 12 15882391 15903478 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRBP 9 123109500 123268576 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRC 15 43599563 43618800 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 18 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRIP1 1 110031577 110074641 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 28 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRIP2 7 129434433 129488399 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 23 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRN 2 36843640 36966472 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRN3 14 30893799 31026401 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STRN4 19 46719507 46746994 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STS 23 7219456 7354810 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STT3A 11 125591712 125625215 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STT3B 3 31532638 31637622 FALSE 242 -1.01109204513629 11 30693664 31635954 0.593443012170704 1 0 0.593443012170704 1 0 942290 1 3 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STUB1 16 680224 682870 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STUM 1 226548800 226609214 FALSE 94 0.176442903835246 63 226359360 226631718 0.54220702508464 4 NA 0.54220702508464 4 NA 272358 NA 3 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX10 19 13144058 13150383 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX11 6 144150526 144188370 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX12 1 27773183 27824452 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX16 20 58651253 58679526 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX16-NPEPL1 20 58651434 58715410 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 22 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX17 9 99906633 99970341 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX18 4 4415742 4542346 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX19 3 94014369 94028610 FALSE 274 -0.595080947511316 28 93874256 98034891 NA 2 NA NA 2 NA 4160635 NA 11 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX1A 7 73699206 73719672 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX1B 16 30989256 31010661 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX2 12 130789600 130839266 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX3 11 59713456 59805882 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX4 16 31032889 31042975 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX5 11 62806897 62832088 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX6 1 180972712 181023121 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX7 6 132445867 132513198 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STX8 17 9250471 9576591 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STXBP1 9 127579370 127696027 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STXBP2 19 7636881 7647873 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STXBP3 1 108746674 108809526 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STXBP4 17 54968727 55173632 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 17 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STXBP5 6 147204425 147390476 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STXBP5L 3 120908072 121424761 FALSE 279 -0.634498000000946 28 120167042 121419034 NA 2 NA NA 2 NA 1251992 NA 8 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STXBP6 14 24809656 25050297 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STYK1 12 10618939 10674318 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STYX 14 52730180 52774998 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 STYXL1 7 75996338 76048004 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUB1 5 32531633 32604079 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUCLA2 13 47745736 48037968 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUCLG1 2 84423523 84460045 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUCLG2 3 67360460 67654614 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUCNR1 3 151873643 151884619 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUCO 1 172532349 172611833 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 32 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUDS3 12 118376380 118418031 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUFU 10 102503987 102633535 TRUE 740 2.02222622258464 113 102504158 102633511 0.593481580287395 17 NA 0.593481580287395 17 NA 129353 NA 1 40 3 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUGCT 7 40134977 40860763 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUGP1 19 19276018 19320844 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUGP2 19 18990888 19034023 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 19 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUGT1 13 52652709 52700909 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULF1 8 69466624 69660915 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULF2 20 47656348 47786616 FALSE 1388 1.74017248957436 103 47627189 47656846 0.593481580287395 14 NA 0.593481580287395 14 NA 29657 NA 2 25 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1A1 16 28605196 28623625 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1A2 16 28591943 28597109 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1A3 16 30199228 30204310 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1A4 16 29459889 29464976 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1B1 4 69721162 69787961 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1C2 2 108288639 108309915 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1C3 2 108247195 108265351 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1C4 2 108377911 108388057 FALSE 162 -0.798732688245277 16 106439098 108729126 0.593443012170704 1 0 0.593443012170704 1 0 2290028 1 11 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT1E1 4 69841212 69860152 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT2A1 19 47870466 47886397 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT2B1 19 48552075 48599425 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT4A1 22 43824509 43862503 FALSE 1447 -0.990573665280478 10 43687532 44848940 0.593443012170704 1 0 0.593443012170704 1 0 1161408 1 12 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SULT6B1 2 37167820 37196598 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUMF1 3 3700814 4467281 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUMF2 7 56064002 56080670 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUMO1 2 202206180 202238608 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUMO2 17 75165586 75182983 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUMO3 21 44805617 44818779 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUMO4 6 149400227 149401292 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUN1 7 816615 896435 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 31 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUN2 22 38734725 38794143 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUN3 7 47987148 48029119 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUN5 20 32983773 33004433 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUOX 12 55997180 56006641 FALSE 884 -0.87328128400006 13 55986964 56074489 0.522719719214577 1 0 0.522719719214577 1 0 87525 1 4 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPT16H 14 21351472 21384266 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 25 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPT20H 13 37009312 37059713 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 26 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPT3H 6 44809317 45377953 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPT4H1 17 58345175 58353093 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPT5H 19 39436156 39476670 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPT6H 17 28662091 28702684 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 37 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPT7L 2 27650812 27663840 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUPV3L1 10 69180232 69209099 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SURF1 9 133351755 133356676 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SURF2 9 133356552 133361169 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SURF4 9 133361449 133376166 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SURF6 9 133328774 133336398 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUSD1 9 112040785 112175408 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUSD2 22 24181259 24189110 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUSD3 9 93058688 93085138 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUSD4 1 223220819 223364202 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUSD5 3 33150042 33219215 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUSD6 14 69611596 69715142 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUV39H1 23 48695554 48709012 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUV39H2 10 14878820 14904315 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SUZ12 17 31937018 32001045 FALSE 1164 0.984408341061212 82 31932022 32022669 0.593481580287395 8 NA 0.593481580287395 8 NA 90647 NA 2 31 4 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SV2A 1 149903318 149917882 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SV2B 15 91099950 91301309 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SV2C 5 76083172 76353939 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SVBP 1 42807052 42817252 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SVEP1 9 110365251 110579880 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 65 9 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SVIL 10 29457338 29736781 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 43 8 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SVIP 11 22813799 22830299 FALSE 769 -0.765131918655043 18 22726299 32104415 0.387809979850725 1 0 0.387809979850725 1 0 9378116 1 26 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SVOP 12 108907741 109021240 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SVOPL 7 138594285 138701352 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 15 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SWAP70 11 9664077 9752991 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 13 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SWI5 9 128275379 128288990 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SWSAP1 19 11374685 11376951 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SWT1 1 185157080 185291765 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 20 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYAP1 23 16719632 16765336 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYBU 8 109573978 109691791 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCE1 10 133553901 133569835 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 13 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCE1L 16 77199397 77213215 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCE2 19 12898786 12919276 FALSE 1303 -0.374175356398884 41 12847883 12933687 NA 2 NA NA 2 NA 85804 NA 7 6 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCE3 22 50551112 50562905 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCN 19 39202831 39204266 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCP1 1 114854803 114995370 FALSE 40 -0.536195164432015 31 114718137 115663936 NA 2 NA NA 2 NA 945799 NA 7 31 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCP2 20 59863563 59933655 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 46 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCP2L 6 10886831 10979320 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 28 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYCP3 12 101728648 101739472 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYDE1 19 15107403 15114988 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYDE2 1 85156873 85201046 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYF2 1 25222679 25232502 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYK 9 90801787 90898549 FALSE 679 1.22638767018391 87 90801995 90898489 0.593481580287395 9 NA 0.593481580287395 9 NA 96494 NA 1 28 3 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYMPK 19 45815410 45863290 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYN1 23 47571898 47619943 FALSE 1475 1.53724251982047 98 47556283 47574028 0.593481580287395 12 NA 0.593481580287395 12 NA 17745 NA 2 24 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYN2 3 12004402 12191400 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYN3 22 32512552 33058372 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNC 1 32680360 32703596 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNCRIP 6 85607785 85643792 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNDIG1 20 24469199 24666616 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNDIG1L 14 74405893 74426102 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNE1 6 152121684 152637801 FALSE 507 2.32194774786057 121 151690625 152129452 0.593481580287395 22 NA 0.593481580287395 22 NA 438827 NA 2 196 28 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNE2 14 63852983 64226433 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 134 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNE3 14 95407266 95475836 FALSE 991 -0.518304757020061 34 95191561 95544037 NA 2 NA NA 2 NA 352476 NA 3 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNE4 19 36003299 36008793 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNGAP1 6 33419661 33457541 FALSE 459 -0.394054757052465 41 33323048 33443970 NA 2 NA NA 2 NA 120922 NA 5 32 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNGR1 22 39349925 39385588 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNGR2 17 78168558 78173527 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNGR3 16 1989660 1994275 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNGR4 19 48364395 48376376 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNJ1 21 32628759 32728048 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 36 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNJ2 6 157981887 158099176 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 32 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNJ2BP 14 70366496 70417061 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNJ2BP-COX16 14 70326064 70417074 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNM 15 99098217 99135593 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 21 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNPO 5 150601080 150659220 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNPO2 4 118850688 119061247 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNPO2L 10 73644881 73663803 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNPR 3 63228315 63616921 FALSE 263 -0.35964030579044 41 62532938 63864622 NA 2 NA NA 2 NA 1331684 NA 6 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYNRG 17 37514797 37609496 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 28 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYP 23 49187804 49200259 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYPL1 7 106090503 106112576 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYPL2 1 109466628 109482137 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYS1 20 45361937 45376798 FALSE 1384 -0.229789907358964 49 45348311 45425772 0.331933131290263 3 NA 0.331933131290263 3 NA 77461 NA 6 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYS1-DBNDD2 20 45363200 45410610 FALSE 1384 -0.229789907358964 49 45348311 45425772 0.331933131290263 3 NA 0.331933131290263 3 NA 77461 NA 6 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT1 12 78863993 79452008 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT10 12 33374238 33439819 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT11 1 155859509 155885199 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 8 1 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT12 11 67006778 67050863 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT13 11 45240301 45286319 FALSE 774 -0.107067508303276 54 45095876 45934215 0.569455701337318 3 NA 0.569455701337318 3 NA 838339 NA 10 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT14 1 209938174 210171389 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT15 10 46578217 46594173 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT16 14 61811974 62112550 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT17 16 19167971 19268334 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT2 1 202590596 202710417 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT3 19 50621307 50639827 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT4 18 43267878 43277650 FALSE 1253 -0.472157265681454 37 42085793 43277209 NA 2 NA NA 2 NA 1191416 NA 3 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT5 19 55171199 55180441 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT6 1 114089291 114153919 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT7 11 61515313 61581148 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 15 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT8 11 1828307 1837521 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYT9 11 7238778 7469042 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYTL1 1 27342020 27353937 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYTL2 11 85694224 85811159 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYTL3 6 158650014 158764876 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYTL4 23 100674491 100732123 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYTL5 23 38006582 38128819 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SYVN1 11 65121780 65134533 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SZRD1 1 16352575 16398145 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 SZT2 1 43389882 43454247 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 82 7 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAAR1 6 132644984 132646003 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAAR2 6 132617022 132624275 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAAR5 6 132588673 132589686 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAAR6 6 132570322 132571359 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 4 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAAR8 6 132552693 132553721 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAAR9 6 132538290 132539336 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAB1 22 39399741 39437060 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAB2 6 149218641 149411613 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAB3 23 30827442 30975084 FALSE 1462 -0.830640201023493 15 30653581 33339288 0.449390955025597 1 0 0.449390955025597 1 0 2685707 1 4 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAC1 7 97731908 97740472 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAC3 12 57010000 57028883 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAC4 17 49838309 49848017 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACC1 8 38728186 38853028 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACC2 10 121989174 122254545 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 48 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACC3 4 1721490 1745176 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACO1 17 63600872 63608365 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACR1 2 75046463 75199700 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACR2 10 69403903 69416867 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACR3 4 103586031 103719816 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TACSTD2 1 58575423 58577773 FALSE 22 -0.492354325413414 37 58534040 58700034 NA 2 NA NA 2 NA 165994 NA 4 8 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TADA1 1 166856510 166876327 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TADA2A 17 37406874 37479730 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TADA2B 4 7041899 7057952 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TADA3 3 9779860 9793011 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF1 23 71366239 71532374 FALSE 1494 0.888697789247937 80 71366209 71465995 0.593481580287395 7 NA 0.593481580287395 7 NA 99786 NA 1 49 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF10 11 6606296 6612667 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF11 6 34877462 34888089 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF12 1 28589323 28643085 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF13 1 109062486 109076002 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF15 17 35713791 35864615 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 65 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF1A 1 222557902 222589933 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF1B 2 9843354 9934416 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF1C 16 84177847 84187070 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 16 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF1D 11 93729948 93784391 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF1L 9 32629454 32635669 FALSE 659 -0.671695704683809 25 32466279 32630114 0.276933305076759 1 0 0.276933305076759 1 0 163835 1 5 22 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF2 8 119730775 119832863 FALSE 635 -0.240283647650564 49 119593820 120497470 0.331933131290263 3 NA 0.331933131290263 3 NA 903650 NA 7 29 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF3 10 7818504 8016627 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF4 20 61953469 62065810 FALSE 1397 -0.717084636958605 21 59195834 62065115 0.328777186374237 1 0 0.328777186374237 1 0 2869281 1 9 20 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF4B 18 26225936 26391685 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF5 10 103367967 103389065 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF5L 1 229593111 229626047 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF6 7 100107070 100119841 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 16 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF6L 11 62771303 62787342 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF7 5 141260225 141320821 FALSE 399 -0.311046797329047 44 140786563 141574137 0.18904974046126 3 NA 0.18904974046126 3 NA 787574 NA 57 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF7L 23 101268253 101293057 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF8 6 42050513 42087461 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF9 5 69364743 69370013 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAF9B 23 78129748 78139706 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAGAP 6 159034468 159045152 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAGLN 11 117199321 117204782 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAGLN2 1 159918107 159925732 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAGLN3 3 111998664 112013887 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAL1 1 47216290 47232220 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAL2 9 105662457 105663112 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TALDO1 11 747329 765024 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAMM41 3 11790442 11846919 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 9 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TANC1 2 158968671 159232659 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 34 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TANC2 17 63009556 63427699 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 36 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TANGO2 22 20017014 20065926 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TANGO6 16 68843604 69085180 FALSE 1114 1.13475645647711 84 68687630 68860332 0.593481580287395 9 NA 0.593481580287395 9 NA 172702 NA 3 22 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TANK 2 161136908 161236221 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAOK1 17 29390464 29551904 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAOK2 16 29973641 29992261 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 27 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAOK3 12 118149801 118372945 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAP1 6 32845209 32853978 FALSE 450 -0.672386269912017 25 32822247 32859420 0.276933305076759 1 0 0.276933305076759 1 0 37173 1 5 14 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAP2 6 32821833 32838780 FALSE 450 -0.672386269912017 25 32822247 32859420 0.276933305076759 1 0 0.276933305076759 1 0 37173 1 5 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAPBP 6 33299694 33314387 FALSE 457 -0.585863588832874 28 33264074 33313388 NA 2 NA NA 2 NA 49314 NA 7 11 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAPBPL 12 6451690 6466517 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 15 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAPT1 4 16160505 16227410 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TARBP1 1 234391313 234479103 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 34 3 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TARBP2 12 53500921 53506431 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TARDBP 1 11012344 11026420 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TARM1 19 54069895 54081365 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TARS 5 33440696 33469539 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TARS2 1 150487364 150507609 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TARSL2 15 101653598 101724604 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS1R1 1 6555181 6579757 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS1R2 1 18839599 18859682 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 14 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS1R3 1 1331314 1335306 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R1 5 9628997 9712378 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R10 12 10825317 10826358 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R13 12 10907926 10909562 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R14 12 10937406 11171573 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 35 16 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R16 7 122994704 122995700 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R19 12 11021619 11022620 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R20 12 10996495 10997875 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R3 7 141764097 141765197 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R30 12 11132958 11134644 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R31 12 11030387 11031407 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R38 7 141972631 141973773 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 4 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R39 7 143183419 143184435 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R4 7 141778442 141780819 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 4 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R40 7 143222037 143223079 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R41 7 143477873 143478796 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R42 12 11185993 11186937 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R43 12 11091287 11092313 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R46 12 11061365 11062294 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R5 7 141790217 141791367 FALSE 568 -0.56191570967864 31 141714228 141972804 NA 2 NA NA 2 NA 258576 NA 10 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R50 12 10985913 10986912 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R60 7 143443453 143444409 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R7 12 10801532 10802627 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R8 12 10806051 10807293 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAS2R9 12 10809094 10810168 FALSE 846 -0.0213534498612608 55 10722935 11717834 0.382396641383437 4 0 0.382396641383437 4 0 994899 4 26 4 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TASP1 20 13389392 13638940 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAT 16 71565660 71577130 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TATDN1 8 124488485 124539458 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 14 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TATDN2 3 10248023 10281218 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TATDN3 1 212791828 212816626 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAX1BP1 7 27739331 27844564 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAX1BP3 17 3662896 3668682 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TAZ 23 154411518 154421726 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBATA 10 70771239 70785401 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D1 4 37891087 38139175 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D10A 22 30291990 30327046 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D10B 16 30357102 30370264 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D10C 11 67403915 67410089 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D12 10 94402504 94535930 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D13 9 128787204 128810432 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D14 4 6909242 7033118 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D15 12 71839707 71927248 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D16 17 79932343 80035848 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 17 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D17 19 49877425 49888749 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D19 4 26576437 26755351 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D2 9 98198999 98255721 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 18 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D20 20 435480 462553 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D21 15 73873608 73889214 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D22A 22 46762617 47175699 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D22B 6 37257772 37332970 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D23 3 100261000 100325251 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D24 16 2475051 2509560 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D25 23 48539457 48562609 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D26 17 15732247 15749192 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D28 17 18635006 18661950 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D29 17 30553502 30563493 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D2B 15 77984036 78077724 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D30 12 64780516 64881032 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D31 8 123041968 123152153 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 24 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D32 6 121079494 121334745 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 32 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D3B 17 36165681 36176636 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D3F 17 36428618 36439566 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D4 13 75283503 75482114 FALSE 949 -0.79745272696754 18 72783611 75800864 0.387809979850725 1 0 0.387809979850725 1 0 3017253 1 7 29 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D5 3 17157162 18444817 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 43 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D7 6 13266542 13328583 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D8 2 101007617 101252866 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D8B 23 106802680 106876145 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 26 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D9 4 140620765 140756120 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBC1D9B 5 179862066 179907859 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCA 5 77691166 77868780 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCB 19 36114289 36125947 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCC 6 42744481 42746096 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCCD1 3 186546073 186570543 FALSE 310 -0.68617161565026 25 186150151 186743759 0.276933305076759 1 0 0.276933305076759 1 0 593608 1 9 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCD 17 82752064 82945922 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 48 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCE 1 235328570 235452443 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCEL 11 121024072 121090775 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBCK 4 106041599 106321495 FALSE 350 -0.734471432843336 19 105369719 109999882 0.593443012170704 1 0 0.593443012170704 1 0 4630163 1 28 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBK1 12 64451880 64502108 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBKBP1 17 47694081 47712050 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBL1X 23 9463295 9741037 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBL1XR1 3 177019340 177228000 TRUE 296 1.11990635751143 84 177025548 179245109 0.593481580287395 9 NA 0.593481580287395 9 NA 2219561 NA 6 15 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBL2 7 73567533 73578791 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBL3 16 1972037 1982933 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 26 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBP 6 170554302 170572870 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBPL1 6 133952170 133990432 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBPL2 14 55413541 55456726 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBR1 2 161416094 161425870 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBRG1 11 124622836 124635398 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBRG4 7 45100100 45112047 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX1 22 19756703 19783593 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX10 11 67631303 67639560 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 9 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX15 1 118883046 118989556 FALSE 46 -0.673684454186075 25 117628427 119415546 0.276933305076759 1 0 0.276933305076759 1 0 1787119 1 7 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX18 6 84687351 84764519 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX19 1 168281040 168314426 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX2 17 61399896 61409466 FALSE 1210 -0.283500652137152 46 60671397 61480154 0.261157737158964 3 NA 0.261157737158964 3 NA 808757 NA 3 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX20 7 35202430 35254147 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX21 17 47733244 47746119 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 13 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX22 23 80014756 80031769 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX3 12 114670254 114684164 TRUE 919 1.83011642143195 107 114670218 114684179 0.593481580287395 15 NA 0.593481580287395 15 NA 13961 NA 1 21 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX4 17 61452404 61485110 FALSE 1210 -0.283500652137152 46 60671397 61480154 0.261157737158964 3 NA 0.261157737158964 3 NA 808757 NA 3 10 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX5 12 114353931 114408442 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBX6 16 30085793 30091887 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBXA2R 19 3594506 3606840 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBXAS1 7 139777051 140020325 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TBXT 6 166157656 166168700 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TC2N 14 91779751 91867536 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCAF1 7 143851375 143902198 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCAF2 7 143620952 143730409 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCAIM 3 44338119 44409451 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCAP 17 39664187 39666555 FALSE 1173 -0.600812074431575 28 39564387 39699581 NA 2 NA NA 2 NA 135194 NA 8 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEA1 8 53966552 54022529 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEA2 20 64049836 64072347 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEA3 1 23381061 23424740 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL1 23 103628704 103630953 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL2 23 102125688 102127711 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 3 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL3 23 103607451 103629690 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL4 23 103576231 103587736 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL5 23 103273691 103276872 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL6 23 102140476 102142970 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL7 23 103330196 103332326 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL8 23 103252995 103255203 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEAL9 23 103356489 103358462 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEANC 23 13653189 13681964 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 5 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCEANC2 1 54053584 54112519 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCERG1 5 146447311 146511961 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCERG1L 10 131092391 131311721 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF12 15 56918623 57299281 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 23 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF15 20 603797 610398 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF19 6 31158542 31167159 FALSE 444 -0.244714509655995 47 30948824 31166170 0.593443012170704 3 1 0.593443012170704 3 1 217346 2 11 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF20 22 42160013 42343616 FALSE 1445 -0.00462438440054337 56 42090800 42411747 0.593443012170704 3 NA 0.593443012170704 3 NA 320947 NA 4 26 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF21 6 133889138 133895553 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF23 2 27149004 27156974 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF24 8 66946501 66962590 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF25 16 89873570 89913627 FALSE 1130 -0.811934353532039 15 89828618 89910636 0.449390955025597 1 0 0.449390955025597 1 0 82018 1 2 20 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF3 19 1609290 1652605 TRUE 1272 2.21974680282026 120 1609477 1652329 0.593481580287395 20 NA 0.593481580287395 20 NA 42852 NA 1 31 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF4 18 55222331 55664787 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF7 5 134114711 134151865 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF7L1 2 85133410 85310388 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCF7L2 10 112950250 113167678 TRUE 745 1.38451648814753 93 112815335 113167691 0.593481580287395 11 NA 0.593481580287395 11 NA 352356 NA 2 29 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCFL5 20 62841115 62861763 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCHH 1 152106317 152115454 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 24 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCHHL1 1 152084144 152089064 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCHP 12 109900264 109983841 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 30 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCIM 8 40153455 40155308 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCIRG1 11 68039016 68050895 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCL1A 14 95709967 95714196 FALSE 992 2.13310014624107 118 95686529 95714247 0.593481580287395 19 NA 0.593481580287395 19 NA 27718 NA 2 8 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCL1B 14 95686417 95692643 FALSE 992 2.13310014624107 118 95686529 95714247 0.593481580287395 19 NA 0.593481580287395 19 NA 27718 NA 2 7 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCN1 11 59852800 59866575 FALSE 779 -0.68237138347186 25 59578307 60405891 0.276933305076759 1 0 0.276933305076759 1 0 827584 1 20 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCN2 22 30606838 30627278 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 9 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCOF1 5 150357629 150400308 FALSE 406 -0.544352612252152 31 150166967 150399004 NA 2 NA NA 2 NA 232037 NA 5 34 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP1 6 159778498 159789749 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 14 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP10 6 167357031 167384510 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 5 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP10L 21 32574841 32587373 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP10L2 6 167146414 167196913 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP11 6 35118071 35148610 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 11 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP11L1 11 33039417 33105943 FALSE 771 -0.613884327674156 26 32583868 33774394 0.593443012170704 2 0 0.593443012170704 2 0 1190526 2 13 23 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP11L2 12 106301929 106347015 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCP11X2 23 102456862 102471842 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 1 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTA 3 49412206 49416475 FALSE 253 1.40394245806866 93 49359191 49412657 0.593481580287395 11 NA 0.593481580287395 11 NA 53466 NA 2 4 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTE1 6 44278743 44297688 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTE3 6 169740114 169751587 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTEX1D1 1 66752459 66778787 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTEX1D2 3 196291219 196318299 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTEX1D4 1 44805913 44806675 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTN1 12 110614027 110649430 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTN2 12 123671113 123708403 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 18 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TCTN3 10 95663396 95694143 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 15 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDG 12 103965804 103988874 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDGF1 3 46574534 46582463 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDO2 4 155854738 155920406 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDP1 14 89954939 90044768 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDP2 6 24649977 24667033 FALSE 429 -0.805784154774766 14 20546377 25861996 0.593443012170704 1 0 0.593443012170704 1 0 5315619 1 25 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD1 10 114179270 114232304 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 29 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD10 1 154502219 154548147 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 12 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD12 19 32719753 32829580 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD15 2 21123917 21143272 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD3 13 60396457 60573878 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD5 1 179591613 179691272 FALSE 74 -0.589588184480294 28 179302743 179846780 NA 2 NA NA 2 NA 544037 NA 6 19 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD6 6 46687875 46704319 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD7 9 97411950 97496125 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRD9 14 103928462 104052667 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 42 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRKH 1 151770107 151791416 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TDRP 8 489792 545781 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEAD1 11 12674591 12944483 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEAD2 19 49340595 49362457 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEAD3 6 35473597 35497076 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEAD4 12 2959330 3040673 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEC 4 48135783 48269864 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TECPR1 7 98214624 98252251 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 29 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TECPR2 14 102362963 102502481 FALSE 996 -0.579401018683582 31 102193509 102726551 NA 2 NA NA 2 NA 533042 NA 7 25 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TECR 19 14517085 14565980 FALSE 1306 2.14347732187516 118 14514725 14560180 0.593481580287395 19 NA 0.593481580287395 19 NA 45455 NA 2 32 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TECRL 4 64275257 64409468 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 13 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TECTA 11 121101173 121191493 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 38 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TECTB 10 112283400 112305035 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEDC1 14 105489855 105499575 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEDC2 16 2460080 2464963 FALSE 1072 -0.639047048847373 28 2178693 2530992 NA 2 NA NA 2 NA 352299 NA 18 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEDDM1 1 182398117 182400616 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEF 22 41367333 41399326 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEFM 17 30897336 30906820 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEK 9 27109141 27230175 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 26 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEKT1 17 6789133 6831761 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEKT2 1 36084075 36088275 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEKT3 17 15303811 15341641 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEKT4 2 94871433 94876829 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEKT5 16 10627501 10694945 FALSE 1085 -0.84470762604648 15 10431390 10818508 0.449390955025597 1 0 0.449390955025597 1 0 387118 1 5 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TELO2 16 1493344 1510457 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEN1 17 75979220 76000586 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEN1-CDK3 17 75979231 76005999 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENM1 23 124375903 124963817 FALSE 1511 1.93711734095975 111 124339637 124378255 0.593481580287395 16 NA 0.593481580287395 16 NA 38618 NA 3 52 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENM2 5 167284799 168264157 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 46 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENM3 4 182143987 182803024 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 44 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENM4 11 78652831 79440948 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 51 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENT2 5 79612120 79686648 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENT4A 5 6713007 6757048 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENT4B 16 50152918 50235310 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENT5A 6 81491439 81752774 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENT5B 1 27005020 27012836 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENT5C 1 117605934 117628372 TRUE 44 -0.612782580472254 28 117170176 117606049 NA 2 NA NA 2 NA 435873 NA 3 22 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TENT5D 23 80335504 80445311 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEP1 14 20365667 20413429 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 59 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEPP 16 57976435 57988116 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEPSIN 17 81228277 81239091 FALSE 1238 -0.354427595407813 41 80991895 81246951 NA 2 NA NA 2 NA 255056 NA 8 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TERB1 16 66754976 66801620 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TERB2 15 44956702 44979229 FALSE 1024 -0.533099124113144 31 44956713 48445394 NA 2 NA NA 2 NA 3488681 NA 22 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TERF1 8 73008864 73048122 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TERF2 16 69355561 69408571 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TERF2IP 16 75647786 75761872 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TERT 5 1253147 1295069 FALSE 369 1.33929598022102 90 1246063 1295688 0.593481580287395 10 NA 0.593481580287395 10 NA 49625 NA 2 25 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TES 7 116210493 116258783 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 8 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TESC 12 117038923 117099479 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TESK1 9 35605305 35610041 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TESK2 1 45343883 45491166 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TESMIN 11 68707440 68751564 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TESPA1 12 54948018 54984746 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TET1 10 68560656 68694482 TRUE 724 1.82379116085286 107 68560495 68699571 0.593481580287395 15 NA 0.593481580287395 15 NA 139076 NA 1 45 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TET2 4 105145875 105279816 TRUE 349 2.1416385431435 118 105140965 105279798 0.593481580287395 19 NA 0.593481580287395 19 NA 138833 NA 1 64 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TET3 2 73986404 74108176 TRUE 149 1.4060808229133 93 73984921 74101556 0.593481580287395 11 NA 0.593481580287395 11 NA 116635 NA 1 51 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX10 9 100302077 100352939 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX101 19 43401496 43418597 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX11 23 70528940 70908731 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 29 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX12 11 112167372 112172559 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX13A 23 105218929 105220674 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX13B 23 107980864 107982370 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX13C 23 125320120 125325214 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX13D 23 124246249 124336862 FALSE 1510 0.251681096820913 64 124123960 124335008 0.593443012170704 4 NA 0.593443012170704 4 NA 211048 NA 3 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX14 17 58556678 58692055 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 36 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX15 8 30831544 30913003 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 42 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX19 17 82359247 82363776 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX2 17 64147227 64263301 FALSE 1214 -0.224902535009953 49 63943066 64214199 0.331933131290263 3 NA 0.331933131290263 3 NA 271133 NA 5 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX22 14 105398579 105450106 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX26 13 30932703 30975502 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX261 2 70985938 70994945 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX264 3 51662693 51704323 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX29 13 111316184 111344249 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX30 13 102765990 102773811 FALSE 955 -0.955371764625064 11 102750415 102839799 0.593443012170704 1 0 0.593443012170704 1 0 89384 1 6 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX33 22 36991120 37007841 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX35 1 178513077 178548602 FALSE 71 -0.473468583840393 37 177944644 179094120 NA 2 NA NA 2 NA 1149476 NA 8 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX36 10 125576522 125683144 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX37 2 88524651 88529584 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX38 1 46668855 46673594 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX43 5 126631722 126636287 FALSE 393 -0.394620579434235 40 124649070 131989448 0.593443012170704 2 0 0.593443012170704 2 0 7340378 2 28 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX44 2 231592901 231594283 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX45 19 7492976 7508450 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX46 1 23010834 23015850 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX47 7 88794106 88795721 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 4 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX48 9 114666434 114682066 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX49 12 48727435 48765786 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX50 1 173635333 173637134 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX51 2 126898864 126902097 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX53 9 114656304 114662374 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TEX9 15 56244009 56445997 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TF 3 133745956 133796640 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFAM 10 58385022 58399221 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFAP2A 6 10393186 10419659 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 12 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFAP2B 6 50818723 50847613 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFAP2C 20 56629302 56639283 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFAP2D 6 50713828 50772988 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFAP2E 1 35573370 35595328 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFAP4 16 4257186 4273075 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFB1M 6 155257509 155314493 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFB2M 1 246540560 246566324 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFCP2 12 51093663 51173134 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFCP2L1 2 121216587 121285207 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFDP1 13 113584721 113641470 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFDP2 3 141944428 142149544 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFDP3 23 133216669 133218348 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFE3 23 49028726 49043486 FALSE 1479 1.91251930064054 111 49028915 49043370 0.593481580287395 16 NA 0.593481580287395 16 NA 14455 NA 1 38 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFEB 6 41683978 41736259 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 18 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFEC 7 115935148 116159896 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFF1 21 42362282 42366594 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFF2 21 42346357 42351128 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFF3 21 42311667 42315651 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFG 3 100709331 100748966 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFIP11 22 26491225 26512505 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFPI 2 187464230 187565760 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFPI2 7 93885396 93890991 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFPT 19 54107013 54115675 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFR2 7 100620416 100642779 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TFRC 3 196027183 196082189 FALSE 319 0.991684846118111 82 195895407 196082060 0.593481580287395 8 NA 0.593481580287395 8 NA 186653 NA 2 34 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TG 8 132866958 133134903 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 66 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGDS 13 94574051 94596257 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFA 2 70447280 70554193 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFB1 19 41301587 41353911 FALSE 1338 -0.617993748746664 28 41264533 41322632 NA 2 NA NA 2 NA 58099 NA 3 27 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFB1I1 16 31471585 31477960 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFB2 1 218346235 218444619 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFB3 14 75958099 75982991 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFBI 5 136028895 136063818 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFBR1 9 99104038 99154192 TRUE 685 1.99577760817062 113 99105189 99218340 0.593481580287395 17 NA 0.593481580287395 17 NA 113151 NA 2 32 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFBR2 3 30606502 30694142 TRUE 241 1.67681940883989 102 30606571 30693414 0.593481580287395 13 NA 0.593481580287395 13 NA 86843 NA 1 22 2 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFBR3 1 91680343 91906335 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFBR3L 19 7916145 7919097 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGFBRAP1 2 105264391 105330034 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGIF1 18 3411608 3459978 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGIF2 20 36573488 36593950 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGIF2-RAB5IF 20 36574553 36612384 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGIF2LX 23 89921882 89922883 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGM1 14 24249114 24264432 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGM2 20 38127387 38166578 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGM3 20 2296001 2341078 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGM4 3 44874608 44914990 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGM5 15 43232595 43266857 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGM6 20 2380908 2432753 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGM7 15 43276280 43302255 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGOLN2 2 85318020 85328425 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TGS1 8 55773142 55825448 FALSE 617 0.00128330518501094 58 54463154 55950592 0.387728048050399 4 NA 0.387728048050399 4 NA 1487438 NA 5 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TH 11 2163929 2171877 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THADA 2 43230836 43596046 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 44 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP1 8 42836674 42843325 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP10 15 70881342 70892785 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP11 16 67842082 67844195 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP12 11 76349956 76380971 FALSE 800 -0.534359574257993 31 75796365 76445038 NA 2 NA NA 2 NA 648673 NA 6 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP2 12 71663009 71680639 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP3 1 6624866 6635586 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP4 2 241584405 241637449 FALSE 232 -0.714125561050809 20 241126592 241873238 0.593443012170704 1 0 0.593443012170704 1 0 746646 1 17 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP5 7 108554543 108569750 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP6 4 75513946 75550473 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP7 22 20999104 21002196 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP8 19 36034985 36054762 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THAP9 4 82900684 82919969 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THBD 20 23045633 23049741 FALSE 1369 0.00529205355585521 58 21395996 23365498 0.387728048050399 4 NA 0.387728048050399 4 NA 1969502 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THBS1 15 39581079 39599466 FALSE 1010 -0.687308502033603 22 38362251 40693184 1 2 1 1 2 1 2330933 1 25 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THBS2 6 169215780 169254044 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 27 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THBS3 1 155195588 155209051 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 25 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THBS4 5 79991311 80083287 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THEG 19 361747 376670 FALSE 1268 -0.550469679268302 31 110858 440853 NA 2 NA NA 2 NA 329995 NA 6 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THEGL 4 56530609 56603507 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THEM4 1 151873584 151909808 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THEM5 1 151847263 151853697 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THEM6 8 142727203 142736927 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 3 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THEMIS 6 127708072 127918631 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THEMIS2 1 27872543 27886685 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THG1L 5 157731197 157741448 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THNSL1 10 25016658 25026664 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THNSL2 2 88170295 88186636 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THOC1 18 214520 268050 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THOC2 23 123600561 123733056 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 43 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THOC3 5 175917873 176034680 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THOC5 22 29505879 29555216 FALSE 1431 -0.769259292267371 18 29308534 29642163 0.387809979850725 1 0 0.387809979850725 1 0 333629 1 8 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THOC6 16 3024027 3027755 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THOC7 3 63833870 63863903 FALSE 263 -0.35964030579044 41 62532938 63864622 NA 2 NA NA 2 NA 1331684 NA 6 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THOP1 19 2785460 2815807 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THPO 3 184371935 184381968 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THRA 17 40058290 40093867 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THRAP3 1 36224416 36305357 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THRB 3 24117153 24495756 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THRSP 11 78063861 78068351 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THSD1 13 52377167 52416373 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THSD4 15 71096952 71783383 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 24 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THSD7A 7 11370357 11832198 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 32 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THSD7B 2 136765545 137677717 FALSE 174 1.77637557402647 105 136114456 137160352 0.593481580287395 15 NA 0.593481580287395 15 NA 1045896 NA 2 31 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THSD8 19 12802031 12813581 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THTPA 14 23555988 23560271 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THUMPD1 16 20702816 20742084 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THUMPD2 2 39736060 39779267 FALSE 129 -0.788642704622343 18 39178582 42057703 0.387809979850725 1 0 0.387809979850725 1 0 2879121 1 7 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THUMPD3 3 9362842 9386791 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THY1 11 119417378 119424985 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 THYN1 11 134248279 134253370 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIA1 2 70209444 70248660 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIAF1 17 29073521 29078857 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIAL1 10 119571802 119597029 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIAM1 21 31118416 31559977 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 33 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIAM2 6 154832697 155257723 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 35 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TICAM1 19 4815932 4831704 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TICAM2 5 115578650 115602479 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TICRR 15 89575482 89631056 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 40 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIE1 1 43300993 43323108 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 25 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIFA 4 112274542 112285903 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIFAB 5 135444218 135452399 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGAR 12 4307763 4354593 FALSE 832 2.16514917403125 118 4269876 4445774 0.593481580287395 19 NA 0.593481580287395 19 NA 175898 NA 5 8 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGD2 4 89111500 89114899 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGD3 11 65354767 65357613 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGD4 4 152769354 152779764 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGD5 8 143597835 143603224 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGD6 5 149993118 150001167 FALSE 404 -0.510178414155637 34 149597850 150052115 NA 2 NA NA 2 NA 454265 NA 6 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGD7 16 3298832 3305729 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 7 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIGIT 3 114276913 114310288 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMD4 5 156919282 156963255 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMELESS 12 56416373 56449403 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 27 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM10 11 57528463 57530803 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM10B 11 6481447 6484679 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM13 19 2425624 2427894 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM17A 1 201955491 201970661 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 6 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM17B 23 48893447 48898143 FALSE 1478 -0.291812372260081 46 48801886 49002224 0.261157737158964 3 NA 0.261157737158964 3 NA 200338 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM21 18 74148511 74160530 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM22 17 997117 1003671 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM23 10 45972449 46003734 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM23B 10 49942033 49974850 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 1 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM29 19 10928733 10933535 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM44 19 7926718 7943920 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 13 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM50 19 39480412 39493785 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM8A 23 101345659 101349196 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 3 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM8B 11 112084800 112086798 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMM9 14 58408494 58427614 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMMDC1 3 119498532 119525090 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMP1 23 47582313 47586789 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMP2 17 78852977 78925387 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMP3 22 32801701 32863043 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIMP4 3 12153051 12159351 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TINAG 6 54307859 54390152 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TINAGL1 1 31576485 31587686 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TINCR 19 5558167 5578349 FALSE 1283 -0.166515219977271 52 5290928 5587926 0.426118104232275 3 NA 0.426118104232275 3 NA 296998 NA 4 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TINF2 14 24239643 24242674 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIPARP 3 156673235 156706770 FALSE 294 1.72979908182735 103 156674777 156706777 0.593481580287395 14 NA 0.593481580287395 14 NA 32000 NA 1 22 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIPIN 15 66336206 66386746 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIPRL 1 168178933 168202114 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TIRAP 11 126283065 126298845 FALSE 821 -0.266156715937779 45 125676418 127000515 0.561906404904972 3 0 0.561906404904972 3 0 1324097 3 18 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TJAP1 6 43477523 43506556 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TJP1 15 29699367 29968865 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 44 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TJP2 9 69121264 69274615 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 28 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TJP3 19 3708109 3750813 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 25 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TK1 17 78174075 78187233 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TK2 16 66508003 66552544 FALSE 1108 -0.821852971289495 15 61654130 66853427 0.449390955025597 1 0 0.449390955025597 1 0 5199297 1 16 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TKFC 11 61333210 61353295 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 21 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TKT 3 53224707 53256052 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TKTL1 23 154295671 154330350 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TKTL2 4 163471093 163473746 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLCD1 17 28724348 28727935 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLCD2 17 1702790 1710438 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLDC1 16 84476421 84554033 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLDC2 20 36876121 36894235 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLE1 9 81583683 81689305 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLE2 19 2997638 3047635 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLE3 15 70047790 70098176 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 23 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLE4 9 79571773 79726882 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLE6 19 2977446 2995184 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLK1 2 170990823 171231314 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLK2 17 62458658 62615481 FALSE 1212 -0.173377640395058 52 61863458 63829846 0.426118104232275 3 NA 0.426118104232275 3 NA 1966388 NA 23 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLL1 4 165873258 166103895 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLL2 10 96364606 96513918 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLN1 9 35696948 35732395 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 57 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLN2 15 62390526 62844631 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 58 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLNRD1 15 81000944 81005788 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR1 4 38790677 38856817 FALSE 331 0.370343428243434 68 38662638 38828899 0.389403197422789 6 NA 0.389403197422789 6 NA 166261 NA 4 20 4 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR10 4 38772239 38782990 FALSE 331 0.370343428243434 68 38662638 38828899 0.389403197422789 6 NA 0.389403197422789 6 NA 166261 NA 4 10 4 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR2 4 153684070 153705702 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR3 4 186069152 186088069 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR4 9 117704175 117724730 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR5 1 223109406 223143282 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR6 4 38823715 38856817 FALSE 331 0.370343428243434 68 38662638 38828899 0.389403197422789 6 NA 0.389403197422789 6 NA 166261 NA 4 10 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR7 23 12867083 12890380 FALSE 1453 0.0560811560984207 60 12716198 12906707 0.593443012170704 3 NA 0.593443012170704 3 NA 190509 NA 4 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR8 23 12906620 12923169 FALSE 1453 0.0560811560984207 60 12716198 12906707 0.593443012170704 3 NA 0.593443012170704 3 NA 190509 NA 4 14 5 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLR9 3 52221080 52226163 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLX1 10 101130505 101137789 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLX2 2 74513463 74517147 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TLX3 5 171309284 171312134 FALSE 415 1.98034689653435 113 171309378 171416856 0.593481580287395 17 NA 0.593481580287395 17 NA 107478 NA 2 5 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM2D1 1 61681046 61725423 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM2D2 8 38988808 38996824 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM2D3 15 101621444 101652391 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM4SF1 3 149369022 149377865 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM4SF18 3 149318498 149334414 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM4SF19 3 196319342 196338503 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 5 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM4SF19-TCTEX1D2 3 196316082 196338373 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 7 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM4SF20 2 227362156 227381995 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM4SF4 3 149473974 149503281 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM4SF5 17 4771884 4783213 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM6SF1 15 83107407 83144854 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM6SF2 19 19264364 19273391 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM7SF2 11 65111845 65116384 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM7SF3 12 26973195 27014434 FALSE 861 -0.511905252429731 32 26561792 27687531 1 2 1 1 2 1 1125739 1 10 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM9SF1 14 24189143 24195687 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM9SF2 13 99446311 99564006 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM9SF3 10 96518109 96587452 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 15 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TM9SF4 20 32109506 32167258 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 18 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMA16 4 163494442 163520539 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMA7 3 48440257 48444208 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMBIM1 2 218274192 218292586 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 12 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMBIM4 12 66135846 66170072 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMBIM6 12 49707725 49764934 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC1 9 72521608 72838230 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 20 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC2 20 2536607 2641784 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 20 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC3 15 81331217 81374213 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 26 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC4 19 54160108 54173250 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 15 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC5 16 19410496 19499113 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 26 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC6 17 78110458 78132407 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 25 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC7 16 18983934 19063942 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMC8 17 78130770 78142968 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 17 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCC1 3 129647792 129893606 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCC2 1 205228176 205285632 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCC3 12 94567124 94650562 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 8 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCO1 1 165724293 165827755 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCO2 1 40245947 40251691 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCO3 13 113490995 113554590 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCO4 1 19682213 19799945 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCO5A 15 37921939 37967724 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMCO6 5 140639427 140645408 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED1 19 10832438 10836318 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED10 14 75131470 75176631 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED2 12 123584531 123598577 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED3 15 79311062 79427432 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED4 7 44577894 44582287 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED5 1 93149742 93180728 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED6 16 69343248 69351809 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED7 5 115613508 115632992 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED7-TICAM2 5 115578642 115626161 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED8 14 77335021 77377109 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMED9 5 177592158 177596124 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEFF1 9 100473113 100577636 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEFF2 2 191949043 192195709 FALSE 199 -0.717639377515086 20 191277019 197310573 0.593443012170704 1 0 0.593443012170704 1 0 6033554 1 13 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM100 17 55719627 55732121 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM101 17 44011188 44023946 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM102 17 7435443 7437679 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM104 17 74776483 74839779 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 13 0 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM105 17 81311270 81330674 FALSE 1239 -0.201773157309635 52 81251292 81460363 0.426118104232275 3 NA 0.426118104232275 3 NA 209071 NA 3 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM106A 17 43211835 43220041 FALSE 1191 -0.515679675839481 34 43146165 43526482 NA 2 NA NA 2 NA 380317 NA 6 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM106B 7 12211241 12243367 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM106C 12 47963569 47968878 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM107 17 8173237 8176399 FALSE 1147 -0.887294624890009 13 8096639 8189086 0.522719719214577 1 0 0.522719719214577 1 0 92447 1 7 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM108 3 133038391 133397792 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM109 11 60913874 60923443 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 5 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM11 17 21197280 21214624 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM110-MUSTN1 3 52833121 52897562 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM114 16 8537605 8590193 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM115 3 50354749 50359610 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM116 12 111931282 112013185 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM117 12 43835967 44389762 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM119 12 108589846 108598320 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM120A 7 75986837 75994659 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM120B 12 121712752 121783001 FALSE 925 -0.487776079480054 37 121002504 121793544 NA 2 NA NA 2 NA 791040 NA 13 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM121 14 105526603 105530202 FALSE 1002 -0.27873284982784 46 104802403 105529694 0.261157737158964 3 NA 0.261157737158964 3 NA 727291 NA 19 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM121B 22 17116299 17121367 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM123 11 102396332 102470384 FALSE 813 -0.436892422859658 35 102350971 108222481 1 2 1 1 2 1 5871510 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM125 1 43269994 43274002 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM126A 11 85647967 85656547 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM126B 11 85628573 85636539 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM127 2 96248516 96265994 TRUE 154 2.2924898502595 121 96248714 96266359 0.593481580287395 21 NA 0.593481580287395 21 NA 17645 NA 2 24 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM128 4 4235542 4248212 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM129 4 1715952 1721358 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM130 7 98846488 98870771 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM131 2 97756333 97995891 FALSE 157 -0.743450543902085 18 97757127 98389721 0.387809979850725 1 0 0.387809979850725 1 0 632594 1 3 44 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM131L 4 153466346 153636711 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 38 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM132A 11 60924463 60937159 FALSE 781 -0.443388996781571 37 60921973 61017566 NA 2 NA NA 2 NA 95593 NA 4 20 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM132B 12 125186836 125662377 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM132C 12 128267403 128707915 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM132D 12 129071725 129903666 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM132E 17 34579487 34639318 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM134 11 67461710 67469272 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM135 11 87037844 87323758 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM136 11 120325129 120333682 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM138 11 61362001 61369509 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM139 7 143279957 143288048 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM140 7 135148072 135166215 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 3 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM141 9 136791355 136793257 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM143 19 48332356 48364237 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM144 4 158201604 158255411 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM145 19 42313325 42325062 FALSE 1342 -0.424583186963262 37 42297126 42410557 NA 2 NA NA 2 NA 113431 NA 6 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM147 19 35545595 35547526 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM14A 6 52671109 52686588 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM14B 6 10747759 10852753 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 20 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM14C 6 10722915 10731129 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM150A 2 85598548 85603196 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM150B 19 55312801 55334048 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM150C 4 82483170 82562357 FALSE 344 -0.668182691093138 25 80335931 83458459 0.276933305076759 1 0 0.276933305076759 1 0 3122528 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM151A 11 66291870 66296664 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM151B 6 44270466 44307506 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 34 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM154 4 152618632 152680165 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM155 4 121758930 121765427 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM156 4 38966744 39032922 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM158 3 45224466 45226278 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM159 16 21158377 21180616 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM160 19 47045907 47048630 FALSE 1351 -0.803313559004103 18 47021105 47209252 0.387809979850725 1 0 0.387809979850725 1 0 188147 1 4 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM161A 19 19119169 19138513 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM161B 5 88189633 88269476 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM163 2 134455759 134719000 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM164 23 110002631 110182734 FALSE 1502 -0.33948748333181 44 108694861 110792062 0.18904974046126 3 NA 0.18904974046126 3 NA 2097201 NA 11 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM165 4 55395957 55453397 FALSE 340 -0.624710062667089 26 55346379 64375233 0.593443012170704 2 0 0.593443012170704 2 0 9028854 2 23 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM167A 5 83052846 83077863 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM167B 1 109089803 109096934 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM168 7 112762382 112790592 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM169 2 216081866 216102783 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM17 2 62500221 62511894 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM170A 16 75443054 75465497 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM170B 6 11538278 11583524 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 2 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM171 5 73120292 73131817 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM173 5 139475534 139482935 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM174 5 73173195 73175143 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM175 4 932387 958656 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM176A 7 150800403 150805120 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 7 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM176B 7 150791285 150801360 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 6 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM177 2 119679167 119686507 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM178A 2 39664982 39717963 FALSE 129 -0.788642704622343 18 39178582 42057703 0.387809979850725 1 0 0.387809979850725 1 0 2879121 1 7 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM178B 7 141074232 141480380 FALSE 567 -0.346454323038498 44 141006475 141708994 0.18904974046126 3 NA 0.18904974046126 3 NA 702519 NA 5 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM179 14 104474678 104605647 FALSE 1000 -0.609297905187807 27 103726799 104759510 1 2 1 1 2 1 1032711 1 12 11 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM179B 11 62787415 62790405 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM18 2 667335 677439 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM181 6 158536436 158635428 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM182 2 102736905 103019900 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM183A 1 203007386 203024848 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM184A 7 1542235 1560821 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM184B 22 38219291 38273034 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM184C 4 147617383 147672044 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 22 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM185A 23 149596556 149631912 FALSE 1521 0.0230811637417354 57 139931991 150512942 0.397594064138395 4 0 0.397594064138395 4 0 10580951 4 38 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM185B 2 120221278 120223408 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM186 16 8780384 8797648 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM187 23 153972327 153983195 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM189 20 50118254 50153734 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM189-UBE2V1 20 50081124 50153637 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM19 12 71686087 71705046 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM190 19 55376836 55378244 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM191B 22 18527802 18530573 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM191C 22 21466423 21471269 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM192 4 165070608 165208549 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM196 7 19719310 19773598 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM198 2 219543663 219550595 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM199 17 28357581 28363683 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM200A 6 130365734 130443063 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM200B 1 29119428 29123935 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM200C 18 5882072 5895955 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM201 1 9588922 9614873 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM202 15 72398273 72408029 FALSE 1036 -0.587927922025947 28 70892914 73633183 NA 2 NA NA 2 NA 2740269 NA 23 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM203 9 137204082 137205638 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM204 16 1528688 1555580 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM205 19 11342776 11346518 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM206 1 212363931 212414901 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM207 3 190428655 190449876 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM208 16 67227103 67229278 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM209 7 130164715 130207770 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 15 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM210 9 137170858 137172409 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM211 22 24934954 24946695 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM212 3 171843349 171938715 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM213 7 138797952 138838101 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM214 2 27032910 27041695 FALSE 122 -0.310670991663135 44 26898559 27203880 0.18904974046126 3 NA 0.18904974046126 3 NA 305321 NA 13 17 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM215 9 32783499 32787399 FALSE 660 1.53174971145618 98 32630424 32784887 0.593481580287395 12 NA 0.593481580287395 12 NA 154463 NA 2 4 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM216 11 61391687 61398863 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM217 6 37212180 37258155 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM218 11 125096545 125111763 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM219 16 29940885 29973052 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM220 17 10699015 10730316 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM221 19 17435509 17448567 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM222 1 27322145 27336400 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM223 11 62771629 62792021 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM225 11 123882926 123885642 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM225B 7 99598066 99610813 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM229A 7 124030916 124033023 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM229B 14 67447084 67533739 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM230 20 5068232 5113103 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM231 16 75536744 75556286 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM232 5 110289233 110738956 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM233 12 119593459 119643066 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM234 1 32214472 32222359 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM235 17 78231310 78240987 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM236 10 17752252 17800868 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM237 2 201620184 201643570 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM238 19 55379245 55384598 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 2 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM239 20 2816302 2820284 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM240 1 1535174 1540453 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM241 18 23197144 23437961 FALSE 1247 -0.841548999761881 15 22993758 23462969 0.449390955025597 1 0 0.449390955025597 1 0 469211 1 4 23 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM242 6 157289386 157323601 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM243 7 87196160 87220587 FALSE 541 -0.332675018287135 44 86907683 87475517 0.18904974046126 3 NA 0.18904974046126 3 NA 567834 NA 5 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM244 6 129831244 129861547 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM245 9 109015152 109119945 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM246 9 101473171 101533537 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM247 2 46479565 46484425 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM248 7 66921225 66958551 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM249 8 144352219 144354914 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 4 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM25 11 118531041 118547280 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM250 9 136114581 136118863 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM251 14 93184951 93187089 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM252 9 68536580 68540867 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM253 14 21098937 21103724 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM254 10 80078646 80092557 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM255A 23 120258650 120311556 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM255B 13 113759240 113816995 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM256 17 7402975 7404137 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM256-PLSCR3 17 7389734 7404097 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM258 11 61768501 61792802 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 30 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM259 19 1009648 1021179 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 14 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM26 10 61406643 61453450 FALSE 720 -0.594104068900525 28 60871546 61896774 NA 2 NA NA 2 NA 1025228 NA 3 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM260 14 56488354 56650606 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 17 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM262 11 65084979 65089375 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM263 12 106955719 106978778 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM265 16 30740381 30744281 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM266 15 76059837 76229121 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM267 5 43444252 43483893 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM268 9 114611206 114646422 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM269 1 42785007 42816619 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM270 7 73861159 73865893 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM272 13 51813347 51845175 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM273 10 49154725 49188585 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM30A 6 75252924 75284968 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM30B 14 61277370 61281840 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM31 23 103710909 103714028 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM33 4 41935120 41960572 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM35A 23 101078720 101096364 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM35B 1 34981535 34985353 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM37 2 119429901 119438520 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM38A 19 16661127 16690029 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM38B 9 105694544 105776612 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM39A 3 119429500 119468830 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM39B 1 32072031 32102866 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM40 3 12733525 12769457 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM41A 3 185476496 185499057 FALSE 307 1.44538682346239 95 185285575 185489118 0.593481580287395 11 NA 0.593481580287395 11 NA 203543 NA 2 33 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM41B 11 9280654 9314780 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM42 3 44861869 44865670 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM43 3 14124940 14143679 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM44 3 194587673 194633689 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM45A 3 100492619 100577444 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM45B 11 129815819 129860003 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM47 23 34627064 34657288 FALSE 1463 -0.0126664078313421 56 34129908 36073394 0.593443012170704 3 NA 0.593443012170704 3 NA 1943486 NA 5 4 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM50A 1 25337917 25362361 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM50B 21 33432485 33480011 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM51 1 15152532 15220480 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM52 1 1917590 1919273 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM52B 12 10170542 10191801 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM53 1 44635238 44674555 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM54 1 32894594 32901438 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM56 1 95117338 95197607 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM56-RWDD3 1 95117923 95247225 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM59 1 54026681 54053504 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM59L 19 18607430 18621039 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM60 7 77793728 77798580 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM61 1 54980792 54992293 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM62 15 43123279 43185146 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM63A 1 225845536 225882369 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 22 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM63B 6 44126914 44155519 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 23 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM63C 14 77116568 77259495 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 27 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM64 8 90621995 90791632 FALSE 628 -0.279397590621075 46 90001515 91395059 0.261157737158964 3 NA 0.261157737158964 3 NA 1393544 NA 10 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM65 8 124306189 124372692 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM67 8 93754844 93819234 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 28 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM68 8 55696424 55773407 FALSE 617 0.00128330518501094 58 54463154 55950592 0.387728048050399 4 NA 0.387728048050399 4 NA 1487438 NA 5 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM69 1 45687214 45694443 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM70 8 73972437 73982783 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM71 8 132685007 132760712 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM72 10 44911200 44937002 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM74 8 108606850 108787615 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM74B 20 1180561 1185415 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM79 1 156282935 156293185 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM80 11 695428 705028 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM81 1 205083129 205084460 FALSE 85 -0.424595815017419 37 204980457 205619844 NA 2 NA NA 2 NA 639387 NA 12 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM82 1 15742422 15747982 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM86A 11 18693122 18704785 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM86B 19 55226639 55229264 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM87A 15 42210452 42273663 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM87B 2 112055223 112119318 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 20 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM88 17 7855065 7856099 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM88B 1 1426128 1427787 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM89 3 48620759 48621855 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM8A 16 370773 387113 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 16 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM8B 9 35814451 35865518 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM9 1 201134772 201171574 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM91 19 41350911 41384083 FALSE 1339 1.73543190740636 103 41330682 41353939 0.593481580287395 14 NA 0.593481580287395 14 NA 23257 NA 3 15 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM92 17 50271406 50281485 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM94 17 75441159 75500090 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 33 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM95 17 7355123 7357219 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM97 17 28319095 28328685 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM98 17 32927910 32945106 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM99 17 40819106 40836274 FALSE 1184 -0.279367148483995 45 40782160 41465816 0.561906404904972 3 0 0.561906404904972 3 0 683656 3 50 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMEM9B 11 8947294 8965011 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMF1 3 69019827 69052339 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMIE 3 46694528 46710886 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMIGD1 17 30316333 30334059 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMIGD2 19 4292232 4302431 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMIGD3 1 111483348 111563962 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMLHE 23 155490115 155669944 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMOD1 9 97501180 97601748 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMOD2 15 51751561 51816368 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMOD3 15 51829628 51947295 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMOD4 1 151169986 151176284 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPO 12 98515512 98550379 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPPE 3 33090421 33096801 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS11A 4 67909385 67964140 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS11B 4 68226653 68245720 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS11D 4 67820876 67884032 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS11E 4 68447449 68497604 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS11F 4 68053198 68129880 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS12 12 50842920 50887884 FALSE 876 -0.566245846661345 29 50104037 51920918 1 2 1 1 2 1 1816881 1 27 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS13 11 117900643 117929459 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 16 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS15 21 18269116 18485879 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 25 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS2 21 41464551 41531116 FALSE 1407 1.9429849654278 110 41464651 41507677 0.593481580287395 16 0 0.593481580287395 16 0 43026 16 2 123 31 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS3 21 42371837 42396846 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS4 11 118077012 118121890 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS5 11 113687546 113706373 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 14 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS6 22 37065436 37109713 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 22 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS7 3 112034843 112081269 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMPRSS9 19 2360238 2426239 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMSB10 2 84905625 84906675 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMSB15A 23 102513676 102516784 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMSB15B 23 103918896 104076212 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 7 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMSB4X 23 12975108 12977227 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMTC1 12 29500840 29784759 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMTC2 12 82686880 83134870 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMTC3 12 88142296 88199887 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMTC4 13 100603927 100675093 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMUB1 7 151081080 151083546 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMUB2 17 44186970 44191731 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMX1 14 51240162 51257546 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMX2 11 57712600 57740973 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMX2-CTNND1 11 57712605 57791586 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMX3 18 68673688 68715298 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TMX4 20 7977348 8019829 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNC 9 115019578 115118257 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 43 8 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNF 6 31575567 31578336 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP1 17 28335602 28347009 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP2 14 103123442 103137439 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP3 6 137867188 137883312 TRUE 497 1.29742908483319 90 137194867 138092196 0.593481580287395 10 NA 0.593481580287395 10 NA 897329 NA 4 26 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP6 2 151357592 151380048 FALSE 179 -0.666256340427046 22 147845174 157628563 1 2 1 1 2 1 9783389 1 30 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP8 5 119268692 119399688 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP8L1 19 4639518 4655568 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP8L2 1 151156629 151159749 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFAIP8L3 15 51056598 51105276 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF10A 8 23190452 23225126 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF10B 8 23020133 23069179 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF10C 8 23102590 23117437 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF10D 8 23135588 23164030 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF11A 18 62325287 62391292 FALSE 1263 -0.646518978860434 22 61490571 62978355 1 2 1 1 2 1 1487784 1 7 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF11B 8 118923557 118952200 FALSE 634 0.0213846236241747 58 116879846 119590668 0.387728048050399 4 NA 0.387728048050399 4 NA 2710822 NA 10 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF12A 16 3018445 3022383 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF13B 17 16929816 16972118 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF13C 22 41922023 41926818 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF14 1 2555639 2565382 TRUE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 13 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF17 16 11965107 11968068 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF18 1 1203508 1206691 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF19 13 23570370 23676104 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF1A 12 6328757 6342114 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 11 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF1B 1 12167003 12209228 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF21 6 47231532 47309905 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF25 1 6460786 6466195 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF4 1 1211326 1214138 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF6B 20 63696651 63698684 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 6 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF8 1 12063377 12144207 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 16 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFRSF9 1 7915894 7943165 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF10 3 172505508 172523507 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF11 13 42562736 42608013 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF12 17 7548891 7557890 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF12-TNFSF13 17 7549099 7561601 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF13 17 7558292 7561608 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF13B 13 108251240 108308484 FALSE 957 -0.876489681241881 13 103046146 109206783 0.522719719214577 1 0 0.522719719214577 1 0 6160637 1 9 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF14 19 6661253 6670588 FALSE 1285 1.68720862511838 102 6535003 6665143 0.593481580287395 14 NA 0.593481580287395 14 NA 130140 NA 3 6 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF15 9 114784635 114806126 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF18 1 173039960 173050963 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF4 1 173183734 173207313 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF8 9 114893343 114930595 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNFSF9 19 6530999 6535928 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 5 1 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNIK 3 171061339 171460408 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 34 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNIP1 5 151029945 151093577 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNIP2 4 2741648 2756376 FALSE 327 -0.597853770583838 27 2335804 3228932 1 2 1 1 2 1 893128 1 11 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNIP3 4 121131408 121227466 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNK1 17 7380534 7389774 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNK2 3 195863364 195911945 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 25 1 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNKS 8 9555914 9782346 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNKS1BP1 11 57299638 57324952 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNKS2 10 91798312 91865276 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 29 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNMD 23 100584802 100599885 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNN 1 175067858 175148066 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 25 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNC1 3 52451102 52454070 FALSE 260 -0.548533387558164 31 52412304 52540384 NA 2 NA NA 2 NA 128080 NA 7 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNC2 20 45823214 45833745 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNI1 1 201403768 201429866 FALSE 81 -0.295118893235233 46 201385793 202005607 0.261157737158964 3 NA 0.261157737158964 3 NA 619814 NA 10 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNI2 11 1838989 1841680 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNI3 19 55151767 55157773 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNI3K 1 74235401 74544428 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNT1 19 55132794 55149354 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNT2 1 201359008 201377762 FALSE 80 -0.765421999083083 18 201214235 201384771 0.387809979850725 1 0 0.387809979850725 1 0 170536 1 4 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNNT3 11 1919562 1938706 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNP1 2 216859458 216860064 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNP2 16 11267748 11269533 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNPO1 5 72816312 72916733 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNPO2 19 12699194 12724011 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNPO3 7 128954180 129055173 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 22 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNR 1 175315194 175743770 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 28 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNRC18 7 5306790 5425414 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 51 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNRC6A 16 24610209 24827632 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 38 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNRC6B 22 40044817 40335808 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 35 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNRC6C 17 77959240 78108835 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 28 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNS1 2 217799588 218033982 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 38 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNS2 12 53046969 53064372 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 35 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNS3 7 47275154 47582558 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 34 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNS4 17 40475828 40501597 FALSE 1181 -0.700455617092272 25 40443951 40565437 0.276933305076759 1 0 0.276933305076759 1 0 121486 1 3 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TNXB 6 32041153 32115334 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 72 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOB1 17 50862223 50867978 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOB2 22 41433492 41447023 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOE1 1 45339670 45343975 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOGARAM1 14 44962208 45074431 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 32 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOGARAM2 2 28956611 29061373 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 24 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOLLIP 11 1274371 1309654 FALSE 758 -0.815974781159882 15 1256199 1938423 0.449390955025597 1 0 0.449390955025597 1 0 682224 1 19 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOM1 22 35299275 35347994 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOM1L1 17 54899387 54961956 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 16 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOM1L2 17 17843511 17972422 FALSE 1156 -0.667714937789122 25 17247130 18038913 0.276933305076759 1 0 0.276933305076759 1 0 791783 1 10 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM20 1 235109336 235128936 FALSE 99 -0.401871256504649 38 235112119 236205182 1 2 1 1 2 1 1093063 1 10 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM20L 14 58395916 58408701 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM22 22 38681948 38685421 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM34 20 44942130 44960486 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM40 19 44890569 44903689 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM40L 1 161225939 161230744 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM5 9 37582646 37592642 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM6 6 41787662 41789898 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM7 7 22812628 22822852 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOMM70 3 100363431 100401398 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TONSL 8 144428775 144444444 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 30 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOP1 20 41028818 41124487 TRUE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 28 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOP1MT 8 143304384 143359979 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 14 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOP2A 17 40388516 40417950 FALSE 1180 0.92222723225404 81 40347989 40417892 0.593481580287395 7 NA 0.593481580287395 7 NA 69903 NA 3 40 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOP2B 3 25597905 25664907 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 36 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOP3A 17 18271428 18315007 FALSE 1158 -0.551094293874492 29 18088038 18492817 1 2 1 1 2 1 404779 1 11 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOP3B 22 21957025 21982816 FALSE 1420 -0.805714594408242 15 21773018 22556827 0.449390955025597 1 0 0.449390955025597 1 0 783809 1 7 19 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOPAZ1 3 44241886 44332098 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOPBP1 3 133598175 133662380 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOPORS 9 32540544 32552553 FALSE 659 -0.671695704683809 25 32466279 32630114 0.276933305076759 1 0 0.276933305076759 1 0 163835 1 5 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOR1A 9 129812944 129824134 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOR1AIP1 1 179882042 179925000 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOR1AIP2 1 179839967 179877803 FALSE 74 -0.589588184480294 28 179302743 179846780 NA 2 NA NA 2 NA 544037 NA 6 10 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOR1B 9 129803153 129811281 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOR2A 9 127731524 127735317 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOR3A 1 179081377 179098023 FALSE 71 -0.473468583840393 37 177944644 179094120 NA 2 NA NA 2 NA 1149476 NA 8 9 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOR4A 9 137277749 137282641 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOX 8 58805418 59119208 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOX2 20 43914864 44069616 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOX3 16 52438005 52547802 FALSE 1104 -0.605138556677564 27 51151179 56328599 1 2 1 1 2 1 5177420 1 19 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TOX4 14 21476597 21499175 FALSE 967 -1.20153546954423 5 21463770 21511134 0.40635440857188 0 0 0.40635440857188 0 0 47364 0 3 17 3 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53 17 7661779 7687550 TRUE 1144 1.92114649122348 111 7655719 7687565 0.593481580287395 16 NA 0.593481580287395 16 NA 31846 NA 3 41 2 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53AIP1 11 128934731 128943399 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 5 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53BP1 15 43403061 43510728 TRUE 1019 1.49668020076215 98 43403212 43510651 0.593481580287395 12 NA 0.593481580287395 12 NA 107439 NA 2 62 7 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53BP2 1 223779899 223845972 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53I11 11 44885903 44951306 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53I13 17 29566052 29573157 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53I3 2 24077433 24085861 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53INP1 8 94925972 94949411 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53INP2 20 34704290 34713439 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53RK 20 46684365 46689779 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 4 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53TG3D 16 32252719 32255922 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP53TG5 20 45372563 45407889 FALSE 1384 -0.229789907358964 49 45348311 45425772 0.331933131290263 3 NA 0.331933131290263 3 NA 77461 NA 6 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP63 3 189631416 189897279 TRUE 315 0.313123121990422 67 189626448 189872985 0.593443012170704 4 NA 0.593443012170704 4 NA 246537 NA 1 46 7 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TP73 1 3652520 3736201 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPBG 6 82363206 82370828 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPBGL 11 75240905 75243697 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPCN1 12 113221050 113298585 FALSE 918 -0.534565394783962 31 113099950 114403827 NA 2 NA NA 2 NA 1303877 NA 13 26 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPCN2 11 69048897 69162440 FALSE 794 -0.569763533008515 31 68436899 69427694 NA 2 NA NA 2 NA 990795 NA 12 25 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPD52 8 80034745 80231232 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPD52L1 6 125119049 125264407 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPD52L2 20 63865228 63891545 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPD52L3 9 6328375 6331900 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPGS1 19 507497 519654 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 4 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPGS2 18 36777647 36829216 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPH1 11 18017564 18042426 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPH2 12 71938846 72186618 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 11 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPI1 12 6867119 6870948 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPK1 7 144451941 144836395 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPM1 15 63042632 63071915 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPM2 9 35681992 35690121 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPM3 1 154155304 154194648 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPM4 19 16067021 16103005 FALSE 1313 -0.955918779950012 11 15852176 16234439 0.593443012170704 1 0 0.593443012170704 1 0 382263 1 9 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPMT 6 18128311 18155074 FALSE 427 -0.613723504235659 28 15246603 20212146 NA 2 NA NA 2 NA 4965543 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPO 2 1374066 1543711 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPP1 11 6612763 6619485 FALSE 762 -0.370533743318985 39 6456336 6921786 1 2 1 1 2 1 465450 1 19 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPP2 13 102597003 102679958 FALSE 953 -1.16930356970358 6 102597025 102694471 0.593443012170704 1 0 0.593443012170704 1 0 97446 1 2 32 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPPP 5 659862 693395 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 4 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPPP2 14 21024109 21036276 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPPP3 16 67389809 67393535 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPR 1 186311652 186375693 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 56 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPRA1 3 127571266 127598267 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPRG1 3 188947214 189325304 FALSE 314 -0.606665074241458 28 188406261 189597219 NA 2 NA NA 2 NA 1190958 NA 2 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPRG1L 1 3625002 3630127 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPRKB 2 73729104 73737400 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPRN 9 137191617 137204193 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPRX1 19 47801243 47819051 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPSAB1 16 1240696 1242554 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 6 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPSB2 16 1227272 1230184 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 5 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPSD1 16 1256059 1258998 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPSG1 16 1221651 1225257 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPST1 7 66205199 66420543 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPST2 22 26521983 26596717 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPT1 13 45333471 45341370 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPTE 21 10521553 10606140 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 21 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPTE2 13 19422877 19536762 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPTEP2-CSNK1E 22 38291918 38398522 FALSE 1440 -0.72964954724181 21 38041128 39152388 0.328777186374237 1 0 0.328777186374237 1 0 1111260 1 31 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TPX2 20 31739271 31801805 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRA2A 7 23504780 23532041 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRA2B 3 185915906 185938136 FALSE 308 -0.794389979193731 18 185491580 185937798 0.387809979850725 1 0 0.387809979850725 1 0 446218 1 5 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRABD 22 50185915 50199598 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRABD2A 2 84821650 84907008 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRABD2B 1 47760528 47996895 FALSE 19 -0.748534967535005 18 47023979 50857895 0.387809979850725 1 0 0.387809979850725 1 0 3833916 1 17 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRADD 16 67154180 67160298 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF1 9 120902393 120929173 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF2 9 136881912 136926607 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF3 14 102777476 102911500 TRUE 997 2.2098474170606 120 102777609 102929998 0.593481580287395 20 NA 0.593481580287395 20 NA 152389 NA 2 40 5 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF3IP1 2 238320441 238400900 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF3IP2 6 111556454 111606278 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF3IP3 1 209756032 209782320 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF4 17 28743984 28750958 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF5 1 211326615 211374946 TRUE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF6 11 36487027 36510272 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAF7 16 2155698 2178129 FALSE 1070 -0.371718129314342 41 2090536 2165976 NA 2 NA NA 2 NA 75440 NA 3 28 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAFD1 12 112125501 112153609 FALSE 914 -0.490952704520617 37 111452834 112408613 NA 2 NA NA 2 NA 955779 NA 12 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAIP 3 49828599 49856574 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAK1 3 42013802 42225889 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAK2 2 201377207 201451579 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAM1 8 70573442 70608387 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 11 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAM1L1 4 117083554 117085576 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAM2 6 52497402 52576915 FALSE 470 -0.615770375403777 26 44305763 56504054 0.593443012170704 2 0 0.593443012170704 2 0 12198291 2 70 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRANK1 3 36826820 36945098 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 46 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAP1 16 3651639 3717597 FALSE 1079 -0.983453391074745 11 3616630 3725168 0.593443012170704 1 0 0.593443012170704 1 0 108538 1 3 26 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC1 17 7930345 7932123 FALSE 1145 -0.725527164350784 21 7688833 8048583 0.328777186374237 1 0 0.328777186374237 1 0 359750 1 15 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC10 21 44012319 44106552 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 22 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC11 4 183659267 183713594 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 28 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC12 2 3379675 3485094 FALSE 108 -0.793758984333505 17 41647 3847150 0.593443012170704 1 0 0.593443012170704 1 0 3805503 1 18 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC13 5 65624716 65666233 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC2 23 13712244 13734635 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC2B 19 57363511 57365353 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 2 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC2L 16 88856220 88862686 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC3 1 36136570 36156053 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC3L 6 116494989 116545610 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC4 11 119018432 119025454 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC5 19 7680843 7687703 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC6A 19 45162928 45178237 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC6B 14 39147811 39170532 FALSE 977 -0.405838238668631 41 37680254 45134437 NA 2 NA NA 2 NA 7454183 NA 16 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC8 18 31829173 31953136 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 32 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAPPC9 8 139727725 140458579 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 27 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRARG1 17 1279663 1300987 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRAT1 3 108822698 108855005 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRDMT1 10 17142254 17202054 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRDN 6 123216339 123637093 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 43 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREH 11 118657316 118679690 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREM1 6 41267926 41286719 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREM2 6 41158506 41163186 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREML1 6 41149342 41154337 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREML2 6 41190277 41201194 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREML4 6 41228324 41238882 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRERF1 6 42224931 42452051 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREX1 3 48465811 48467645 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TREX2 23 153444720 153470587 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 14 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRH 3 129974305 129977938 FALSE 283 -0.424730440835942 37 128620435 130098289 NA 2 NA NA 2 NA 1477854 NA 22 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRHDE 12 72087266 72670757 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRHR 8 109086621 109119584 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIAP1 12 120443961 120446412 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIB1 8 125430321 125438405 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 6 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIB2 2 12716889 12742734 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 7 0 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIB3 20 362835 397559 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIL 7 28953358 28958292 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM10 6 30151945 30160934 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM11 1 228393673 228406840 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM13 13 49995888 50020481 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM14 9 98069275 98119212 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM15 6 30163206 30172696 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM16 17 15627960 15684311 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM16L 17 18697998 18736118 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM17 1 228407940 228416861 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM2 4 153152342 153339320 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM21 11 4384897 4393696 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM22 11 5689689 5737089 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM23 5 65589680 65625975 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM24 7 138460334 138589993 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 21 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM25 17 56836387 56914080 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 23 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM26 6 30184455 30213427 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM27 6 28903002 28923989 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM28 19 58544091 58550722 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM29 11 120111275 120185529 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM3 11 6448613 6474459 FALSE 761 -0.538614635265806 31 5901022 6456140 NA 2 NA NA 2 NA 555118 NA 19 14 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM31 6 30102897 30113106 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 9 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM32 9 116687302 116701300 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM33 1 114392777 114511160 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM34 11 5619764 5644398 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM35 8 27284887 27311319 FALSE 591 -0.697497076245142 25 26383155 27469738 0.276933305076759 1 0 0.276933305076759 1 0 1086583 1 8 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM36 5 115124762 115180546 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM37 17 58982638 59106921 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 27 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM38 6 25962802 25991226 FALSE 430 -0.674880191561553 25 25862238 26056477 0.276933305076759 1 0 0.276933305076759 1 0 194239 1 12 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM39 6 30326479 30343729 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM39-RPP21 6 30328907 30346854 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM4 7 99876958 99919600 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 11 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM40 6 30136108 30148735 FALSE 440 -0.6888972806889 22 30073415 30346790 1 2 1 1 2 1 273375 1 9 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM41 5 181222499 181235809 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM42 3 140678039 140701150 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM43 2 95592018 95599778 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM43B 2 95476967 95484731 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM44 11 35662805 35818007 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM45 1 117111060 117122587 FALSE 42 -0.448523507205421 37 116388682 117121244 NA 2 NA NA 2 NA 732562 NA 8 10 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM46 1 155173787 155184971 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 18 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM47 17 75874161 75878575 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM48 11 55262182 55271119 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 6 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM49 11 89797655 89808575 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM49B 11 49027501 49038451 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM49C 11 90031106 90042025 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM49D1 11 89911111 89921767 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM49D2 11 89924064 89933063 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM5 11 5663557 5938619 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 59 13 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM50 7 73312539 73328082 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM51 11 55883297 55891810 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 9 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM51GP 11 48975324 48983826 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM52 5 181254417 181261139 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM54 2 27282392 27307439 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM55 8 66126896 66175487 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM56 7 101085439 101097967 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM58 1 247857199 247878205 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM59 3 160432445 160485773 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM6 11 5596109 5612958 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 11 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM6-TRIM34 11 5596725 5644398 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 22 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM60 4 165016458 165041744 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM61 4 164954446 164977668 FALSE 359 -0.537145439051467 29 152628534 169406666 1 2 1 1 2 1 16778132 1 63 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM62 1 33145402 33182059 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM63 1 26051304 26068436 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM64 11 89968502 89975228 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM64B 11 89869282 89876017 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM64C 11 49053714 49059112 FALSE 777 -0.413031613062249 36 48216862 56275603 0.593443012170704 2 0 0.593443012170704 2 0 8058741 2 46 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM65 17 75880335 75897003 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM66 11 8612037 8682694 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 25 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM67 1 231162112 231221556 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM68 11 4598672 4608259 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM69 15 44728988 44767829 FALSE 1023 0.0610777537534294 60 44736698 44767733 0.593443012170704 3 NA 0.593443012170704 3 NA 31035 NA 1 10 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM7 5 181193924 181205293 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM71 3 32818018 32897826 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM72 16 31214021 31231537 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM73 7 75395063 75410996 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM74 7 72959485 72969466 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM77 11 89710299 89717872 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM8 10 102642310 102660680 FALSE 741 -0.0350158873013187 56 102638646 102657272 0.593443012170704 3 NA 0.593443012170704 3 NA 18626 NA 1 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIM9 14 50975262 51096061 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIML1 4 188139419 188147743 FALSE 365 -0.695790337132022 25 188002815 190026761 0.276933305076759 1 0 0.276933305076759 1 0 2023946 1 5 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIML2 4 188091273 188109603 FALSE 365 -0.695790337132022 25 188002815 190026761 0.276933305076759 1 0 0.276933305076759 1 0 2023946 1 5 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIO 5 14143702 14532128 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 67 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIOBP 22 37696988 37776556 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 41 8 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIP10 19 6737925 6751526 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIP11 14 91965991 92040896 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 34 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIP12 2 229763838 229923239 FALSE 224 -0.785971452809092 16 226864649 230504182 0.593443012170704 1 0 0.593443012170704 1 0 3639533 1 28 46 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIP13 5 892643 919357 TRUE 368 -0.258104479076551 49 876120 1244670 0.331933131290263 3 NA 0.331933131290263 3 NA 368550 NA 6 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIP4 15 64387748 64455303 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 14 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIP6 7 100867138 100873454 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 10 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIQK 8 92883530 93017673 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIR 19 12730640 12734775 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRIT1 1 39838110 39883511 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMO 9 97904489 97922570 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT1 19 13104902 13117567 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT10A 4 99546709 99564032 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT10B 9 37753803 37778972 FALSE 668 -0.355615313121103 38 37442026 65737984 1 2 1 1 2 1 28295958 1 31 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT10C 3 101561862 101566446 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT11 6 125986430 126203817 FALSE 489 -0.641071327572313 28 117482841 126348505 NA 2 NA NA 2 NA 8865664 NA 29 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT112 11 64316460 64318084 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT12 8 124450820 124462150 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT13 1 100133150 100150497 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT1L 1 185118098 185157072 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT2A 22 20111866 20117392 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT2B 23 101009346 101052116 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT44 4 8436140 8493531 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT5 14 60971451 60981358 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT6 20 5937235 5950558 FALSE 1366 -0.6864480660851 22 4784353 9529616 1 2 1 1 2 1 4745263 1 20 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT61A 14 103529184 103537073 FALSE 998 -0.515326070014318 34 102930369 103687208 NA 2 NA NA 2 NA 756839 NA 13 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT61B 2 28849821 28870301 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 11 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMT9B 8 12945642 13031503 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRMU 22 46330875 46357340 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRNAU1AP 1 28553085 28578545 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRNP1 1 26993707 27000898 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRNT1 3 3126916 3150879 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRO 23 54920462 54931431 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TROAP 12 49323236 49331731 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TROVE2 1 193059422 193091777 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 14 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPA1 8 72019917 72075617 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 27 6 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC1 3 142724074 142807888 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC3 4 121879027 121951754 FALSE 352 -0.689691915417127 25 121839741 122741842 0.276933305076759 1 0 0.276933305076759 1 0 902101 1 7 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC4 13 37636636 37870425 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC4AP 20 35002404 35092871 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC5 23 111774315 112082776 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC5OS 23 111876051 111903990 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC6 11 101451564 101872562 FALSE 811 -0.646672265477621 25 101453039 102081219 0.276933305076759 1 0 0.276933305076759 1 0 628180 1 4 16 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPC7 5 136213320 136365545 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM1 15 31001061 31161273 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 37 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM2 21 44350163 44443081 FALSE 1411 -0.796790869313366 18 44231407 44533921 0.387809979850725 1 0 0.387809979850725 1 0 302514 1 8 37 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM3 9 70529063 71446904 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 35 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM4 19 49157741 49211836 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 29 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM5 11 2404515 2423045 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 25 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM6 9 74722495 74888094 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 50 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM7 15 50552473 50686815 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 44 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPM8 2 233917398 234019522 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 27 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPS1 8 115408496 115809673 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 20 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPT1 11 64223799 64226254 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPV1 17 3565444 3609411 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPV2 17 16415542 16437003 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPV3 17 3510502 3557995 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPV4 12 109783085 109833401 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPV5 7 142908101 142933808 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 17 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRPV6 7 142871203 142885762 FALSE 570 0.164160660463523 63 142750561 143222979 0.54220702508464 4 NA 0.54220702508464 4 NA 472418 NA 12 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRRAP 7 98877933 99050831 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 88 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRUB1 10 114938193 114977676 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 10 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TRUB2 9 128305161 128322742 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSACC 1 156337314 156346995 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSC1 9 132891348 132946874 TRUE 701 1.53365824072234 98 132891050 132987245 0.593481580287395 12 NA 0.593481580287395 12 NA 96195 NA 2 62 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSC2 16 2047465 2089487 TRUE 1069 1.12298647206621 84 2034914 2090132 0.593481580287395 9 NA 0.593481580287395 9 NA 55218 NA 4 68 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSC22D1 13 44432143 44577147 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 17 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSC22D2 3 150408335 150466431 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSC22D3 23 107713221 107777342 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSC22D4 7 100463359 100479279 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSEN15 1 184051651 184123978 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSEN2 3 12484432 12539623 FALSE 238 -1.22046191921172 5 12489827 12576760 0.40635440857188 0 0 0.40635440857188 0 0 86933 0 3 13 0 FALSE HOMDEL PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSEN34 19 54189938 54194536 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSEN54 17 75516060 75524739 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 12 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSFM 12 57782589 57808071 FALSE 894 -0.430411211949774 37 57767016 57809571 NA 2 NA NA 2 NA 42555 NA 6 17 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSG101 11 18468336 18527232 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSGA10 2 98997261 99154964 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSGA10IP 11 65945445 65959963 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSGA13 7 130668648 130687432 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSHB 1 115029824 115034309 FALSE 40 -0.536195164432015 31 114718137 115663936 NA 2 NA NA 2 NA 945799 NA 7 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSHR 14 80954989 81146302 FALSE 988 2.47503521410563 123 80955621 81146363 0.593481580287395 24 NA 0.593481580287395 24 NA 190742 NA 2 33 7 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSHZ1 18 75210755 75289950 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSHZ2 20 52972407 53495330 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 14 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSHZ3 19 31274945 31349547 FALSE 1326 -0.282409176824691 46 29923773 32382993 0.261157737158964 3 NA 0.261157737158964 3 NA 2459220 NA 4 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSKS 19 49739753 49763330 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSKU 11 76782251 76798154 FALSE 802 0.0329612857367844 58 76659812 76796320 0.387728048050399 4 NA 0.387728048050399 4 NA 136508 NA 2 5 1 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSLP 5 111070062 111078024 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSN 2 121737103 121767853 FALSE 170 -0.754904177852211 16 113437980 127257337 0.593443012170704 1 0 0.593443012170704 1 0 13819357 1 35 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSNARE1 8 142212080 142403240 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 14 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSNAX 1 231528653 231566524 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSNAX-DISC1 1 231528653 231819244 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 21 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSNAXIP1 16 67806765 67832148 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 27 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN1 1 46175073 46185958 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN10 17 81637171 81648749 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN11 12 30926428 30996599 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN12 7 120787320 120858402 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN13 7 16753535 16784536 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN14 10 80454166 80533123 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN15 10 69451473 69507669 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN16 19 11296139 11326996 FALSE 1300 -0.694609777141894 25 11089641 11375931 0.276933305076759 1 0 0.276933305076759 1 0 286290 1 11 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN17 5 176647387 176659054 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN18 11 44726465 44932421 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN19 12 85014311 85036277 FALSE 902 -0.380940205364152 41 82357069 91178553 NA 2 NA NA 2 NA 8821484 NA 25 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN2 1 115048011 115089500 FALSE 40 -0.536195164432015 31 114718137 115663936 NA 2 NA NA 2 NA 945799 NA 7 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN3 15 77041404 77083984 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN31 12 57738013 57750211 FALSE 892 -0.501289708551947 34 57694315 57747297 NA 2 NA NA 2 NA 52982 NA 3 15 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN32 11 2301997 2318200 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN33 7 129144892 129169697 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 8 0 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN4 11 842808 867116 FALSE 752 -0.71319587825861 19 193096 1016299 0.593443012170704 1 0 0.593443012170704 1 0 823203 1 45 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN5 4 98470367 98658629 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN6 23 100627109 100639991 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN7 23 38561370 38688920 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN8 12 71125085 71441898 FALSE 899 -0.514914116439336 34 69586290 71157668 NA 2 NA NA 2 NA 1571378 NA 11 11 1 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPAN9 12 3077355 3286564 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPEAR 21 44497892 44711580 FALSE 1411 -0.796790869313366 18 44231407 44533921 0.387809979850725 1 0 0.387809979850725 1 0 302514 1 8 70 18 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPO 22 43151514 43163242 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPO2 6 41042554 41044337 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPOAP1 17 58301228 58328760 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 44 9 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPYL1 6 116276578 116279903 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPYL2 23 53082367 53088540 FALSE 1481 0.620493498053204 75 52862624 53235137 0.593481580287395 6 NA 0.593481580287395 6 NA 372513 NA 8 11 0 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPYL4 6 116249961 116254140 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPYL5 8 97273474 97277964 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSPYL6 2 54253184 54256272 FALSE 137 -0.516026802444993 32 48729204 55335111 1 2 1 1 2 1 6605907 1 22 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSR1 17 2322503 2337507 FALSE 1137 -0.775739243618283 18 2058746 3062738 0.387809979850725 1 0 0.387809979850725 1 0 1003992 1 11 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSR2 23 54440401 54445487 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSR3 16 1349240 1351911 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSSC4 11 2400488 2403878 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSSK1B 5 113432554 113435031 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSSK2 22 19130808 19132623 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 5 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSSK3 1 32351521 32364312 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSSK4 14 24205697 24208362 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSSK6 19 19512418 19515685 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TST 22 37010859 37020183 FALSE 1436 -0.796160926823296 18 36991285 37207836 0.387809979850725 1 0 0.387809979850725 1 0 216551 1 8 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSTA3 8 143612618 143618048 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 11 4 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSTD1 1 161037631 161038990 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSTD2 9 97600080 97633575 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TSTD3 6 99520693 99531918 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTBK1 6 43243680 43288259 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 25 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTBK2 15 42738734 42920809 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC1 5 160009113 160065543 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC12 11 113314529 113383544 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 21 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC13 1 230906243 230978875 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 24 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC14 3 180602130 180617828 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC16 9 127716066 127731600 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC17 11 43358932 43494933 FALSE 773 -0.687106911512396 22 34052595 44938318 1 2 1 1 2 1 10885723 1 33 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC19 17 15999380 16045015 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 29 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC21A 3 39107704 39138903 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC21B 2 165857475 165953843 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 34 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC22 1 54779712 54801267 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC23 15 99136323 99251223 FALSE 1061 -0.73547332953364 19 98968730 101923026 0.593443012170704 1 0 0.593443012170704 1 0 2954296 1 21 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC23L 5 34838833 34899456 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC24 1 156579727 156586770 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC25 17 41930635 41965651 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC26 7 139133744 139191986 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 19 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC27 2 32628032 32821051 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 20 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC28 22 27978014 28679865 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 44 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC29 4 146706638 146945882 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC3 21 37073226 37203112 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 54 10 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC30A 2 177612992 177618966 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC30B 2 177548998 177553014 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC31 2 74483073 74494886 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC32 2 19896643 19901986 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC33 5 40512333 40755975 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC34 1 2635976 2801717 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC36 11 118527472 118531197 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC37 5 95461755 95555007 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 39 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC38 22 46267961 46294008 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 14 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC39A 1 51287258 51345116 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC39B 9 15163622 15307360 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 21 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC39C 18 23992773 24135610 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC4 1 54715822 54742657 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC5 14 20256558 20305994 FALSE 964 -0.469521346853753 35 19868574 20352362 1 2 1 1 2 1 483788 1 15 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC6 14 37595847 38041442 FALSE 976 0.0851879605625372 61 37596449 37622988 0.315195151543259 5 NA 0.315195151543259 5 NA 26539 NA 1 44 4 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC7A 2 46916157 47076137 FALSE 134 -0.992652343742298 11 46479662 47176523 0.593443012170704 1 0 0.593443012170704 1 0 696861 1 11 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC7B 14 90524564 90816479 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC8 14 88824153 88881078 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC9 14 70641787 70675360 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC9B 19 40216058 40218399 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTC9C 11 62728069 62740293 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 3 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTF1 9 132375548 132406851 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 17 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTF2 1 117060303 117107453 FALSE 42 -0.448523507205421 37 116388682 117121244 NA 2 NA NA 2 NA 732562 NA 8 26 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTI1 20 37983007 38033468 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTI2 8 33473386 33513601 FALSE 600 -1.17029510777563 6 33372626 36935533 0.593443012170704 1 0 0.593443012170704 1 0 3562907 1 7 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTK 6 80003887 80042527 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 21 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTL 2 112482154 112541739 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL1 22 43039644 43089428 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL10 1 1173884 1197935 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL11 9 121821928 122093606 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL12 22 43166622 43187133 FALSE 1446 -0.785299079849844 16 42432312 43683800 0.593443012170704 1 0 0.593443012170704 1 0 1251488 1 17 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL2 6 167325071 167359503 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL3 3 9808086 9855138 FALSE 233 -0.656161336312497 22 319825 10008499 1 2 1 1 2 1 9688674 1 40 27 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL4 2 218710845 218755416 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL5 14 75633625 75955078 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 44 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL6 17 48762235 48817214 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 19 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL7 1 83865028 83999150 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL8 22 50015123 50056935 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTLL9 20 31870702 31944963 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTN 2 178525989 178830802 FALSE 187 -0.943215909906933 11 177550966 178528261 0.593443012170704 1 0 0.593443012170704 1 0 977295 1 11 625 10 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTPA 8 63048553 63086053 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 5 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTPAL 20 44475886 44494603 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTR 18 31557010 31599021 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTYH1 19 54415219 54436900 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTYH2 17 74213514 74262020 FALSE 1225 -0.289125278559994 45 72127024 74835931 0.561906404904972 3 0 0.561906404904972 3 0 2708907 3 25 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TTYH3 7 2631951 2664802 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUB 11 8019244 8106112 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA1A 12 49184796 49189324 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA1B 12 49127782 49131397 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA1C 12 49188736 49274603 FALSE 874 -0.504503131334203 34 49065120 50081651 NA 2 NA NA 2 NA 1016531 NA 25 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA3C 13 19173770 19181852 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 9 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA3D 2 131476093 131482934 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA3E 2 130191743 130198461 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA4A 2 219249711 219278170 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 12 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA4B 2 219253243 219272188 FALSE 216 -0.818234981444684 15 219252023 219568310 0.449390955025597 1 0 0.449390955025597 1 0 316287 1 13 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBA8 22 18110331 18146554 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBAL3 10 5393098 5404830 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB 6 30720201 30725426 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB1 20 59019254 59026654 FALSE 1396 -0.20354273420644 52 58981312 59194662 0.426118104232275 3 NA 0.426118104232275 3 NA 213350 NA 6 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB2A 6 3153669 3157526 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB2B 6 3224261 3231730 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB3 16 89921392 89938761 FALSE 1131 1.56043341681678 98 89911245 89936047 0.593481580287395 12 NA 0.593481580287395 12 NA 24802 NA 4 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB4A 19 6494319 6502848 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB4B 9 137241213 137243707 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB6 18 12307669 12344320 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB8 10 46892 74163 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBB8P12 18 47390 49557 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBD1 17 59859482 59892945 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBE1 6 112070777 112087529 FALSE 481 0.96234442455973 82 111660493 112071447 0.593481580287395 8 NA 0.593481580287395 8 NA 410954 NA 3 12 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBG1 17 42609676 42615234 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBG2 17 42659305 42667006 FALSE 1187 -0.288337513702535 46 42404917 42698877 0.261157737158964 3 NA 0.261157737158964 3 NA 293960 NA 13 12 3 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBGCP2 10 133278630 133312337 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 24 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBGCP3 13 112485005 112588205 FALSE 959 -0.822152252341848 14 110150402 113263496 0.593443012170704 1 0 0.593443012170704 1 0 3113094 1 19 24 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBGCP4 15 43369221 43409771 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 37 3 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBGCP5 15 22983192 23039673 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUBGCP6 22 50217689 50244992 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUFM 16 28842411 28846408 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUFT1 1 151540305 151583583 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TULP1 6 35497874 35512938 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TULP2 19 48880965 48898733 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TULP3 12 2877223 2941140 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TULP4 6 158232236 158511828 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUSC1 9 25676389 25678440 FALSE 658 -0.893644958865886 13 22010802 32459452 0.522719719214577 1 0 0.522719719214577 1 0 10448650 1 17 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUSC2 3 50320027 50328251 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUSC3 8 15417215 15766649 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUT1 11 62575045 62592177 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUT4 1 52408282 52553487 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 43 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TUT7 9 86287733 86354454 FALSE 676 -0.756886696266379 18 85547131 87919305 0.387809979850725 1 0 0.387809979850725 1 0 2372174 1 10 33 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TVP23A 16 10760919 10818794 FALSE 1085 -0.84470762604648 15 10431390 10818508 0.449390955025597 1 0 0.449390955025597 1 0 387118 1 5 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TVP23B 17 18780995 18806714 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TVP23C 17 15502264 15563595 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TVP23C-CDRT4 17 15436021 15563561 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TWF1 12 43793723 43806375 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TWF2 3 52228610 52239260 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TWIST1 7 19020991 19117672 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TWIST2 2 238848032 238910543 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TWISTNB 7 19695462 19709087 FALSE 526 -0.393232107387359 38 14149199 27094816 1 2 1 1 2 1 12945617 1 54 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TWNK 10 100987367 100994401 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TWSG1 18 9334767 9402420 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXK 4 48066393 48134256 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXLNA 1 32179686 32198285 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXLNB 6 139240061 139292139 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXLNG 23 16786427 16844519 FALSE 1456 -0.546811721532084 31 15827395 20064847 NA 2 NA NA 2 NA 4237452 NA 24 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXN 9 110243811 110256640 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 5 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXN2 22 36467036 36482030 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC11 16 11679080 11742878 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC12 1 52020131 52056171 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC15 5 134873803 134901525 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC16 14 52430590 52552522 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC17 17 6640758 6644541 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC2 18 9885726 9889275 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 8 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC5 6 7881517 7910814 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC8 9 110303521 110337884 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNDC9 2 99318982 99340702 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNIP 1 145992435 145996600 FALSE 52 -0.0345765225004197 56 120810433 146019672 0.593443012170704 3 NA 0.593443012170704 3 NA 25209239 NA 31 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNL1 18 56597208 56651600 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNL4A 18 79970811 80033949 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNL4B 16 72044289 72094431 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 21 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNRD1 12 104215779 104350305 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNRD2 22 19875517 19941992 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 20 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TXNRD3 3 126571779 126655155 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYK2 19 10350529 10380676 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYMP 22 50525752 50530056 FALSE 1451 -0.42535381109487 35 50177188 50782271 1 2 1 1 2 1 605083 1 28 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYMS 18 657604 673578 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYR 11 89177452 89295759 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYRO3 15 41557675 41583586 FALSE 1014 -0.650373361840176 25 41184011 41650930 0.276933305076759 1 0 0.276933305076759 1 0 466919 1 12 22 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYROBP 19 35904401 35908295 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYRP1 9 12685439 12710290 FALSE 652 0.293645799381693 67 8309327 12695616 0.593443012170704 4 NA 0.593443012170704 4 NA 4386289 NA 2 9 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYSND1 10 70137981 70146676 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYW1 7 66995173 67239519 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYW1B 7 72558744 72828198 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYW3 1 74733152 74766678 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 TYW5 2 199929975 199955736 FALSE 203 -0.669090663778206 25 198089042 201229114 0.276933305076759 1 0 0.276933305076759 1 0 3140072 1 19 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 U2AF1 21 43092956 43107587 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 U2AF1L4 19 35742464 35745445 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 U2AF2 19 55654146 55674715 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 U2SURP 3 142964497 143060546 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 U52112.1 23 153872221 153909223 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UACA 15 70654554 70763593 FALSE 1035 -0.343014152478045 44 68187748 70892249 0.18904974046126 3 NA 0.18904974046126 3 NA 2704501 NA 19 30 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UAP1 1 162561506 162599842 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UAP1L1 9 137077501 137084539 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBA1 23 47190861 47215128 FALSE 1473 0.743170439744717 77 47028074 47191894 0.593481580287395 6 NA 0.593481580287395 6 NA 163820 NA 5 26 1 TRUE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBA2 19 34428352 34471251 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBA3 3 69054730 69080408 FALSE 265 -0.569518769275626 29 64010856 69385841 1 2 1 1 2 1 5374985 1 16 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBA5 3 132654446 132678097 FALSE 285 -0.498792352506434 32 130560356 134650874 1 2 1 1 2 1 4090518 1 29 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBA52 19 18571730 18577550 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBA6 4 67612652 67701179 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBA7 3 49805207 49813946 FALSE 256 -0.547497364554056 31 49690107 49862347 NA 2 NA NA 2 NA 172240 NA 9 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBAC1 9 135932969 135961380 FALSE 705 -0.653873313261029 22 134642271 136485046 1 2 1 1 2 1 1842775 1 30 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBAC2 13 99200774 99386434 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBALD1 16 4608883 4615027 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBALD2 17 76265202 76271299 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBAP1 9 34179005 34252523 FALSE 662 -0.688244417473182 25 33568791 34220857 0.276933305076759 1 0 0.276933305076759 1 0 652066 1 6 10 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBAP1L 15 65092770 65115197 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBAP2 9 33921693 34048949 FALSE 662 -0.688244417473182 25 33568791 34220857 0.276933305076759 1 0 0.276933305076759 1 0 652066 1 6 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBAP2L 1 154220179 154271510 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 31 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBASH3A 21 42403447 42447681 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 16 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBASH3B 11 122655675 122814473 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 14 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBB 17 16380798 16382745 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBC 12 124911604 124917368 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBD 6 29555515 29559925 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 3 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2A 23 119574467 119591083 FALSE 1506 0.819455598940904 79 119469687 119591248 0.593481580287395 7 NA 0.593481580287395 7 NA 121561 NA 4 17 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2B 5 134371179 134391992 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2C 20 45812576 45816957 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2D1 10 58334975 58370753 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2D2 5 139526431 139628433 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2D3 4 102794383 102868896 FALSE 348 -0.67620802934341 22 98901936 104491841 1 2 1 1 2 1 5589905 1 32 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2D4 7 43926438 43956136 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2E1 3 23805903 23891316 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2E2 3 23203020 23591793 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2E3 2 180967248 181076585 FALSE 191 -0.789559166320211 18 178752075 181062791 0.387809979850725 1 0 0.387809979850725 1 0 2310716 1 6 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2F 2 237966827 238042782 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2F-SCLY 2 237967014 238099412 FALSE 227 -0.775505853884518 16 233779390 238848603 0.593443012170704 1 0 0.593443012170704 1 0 5069213 1 31 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2G1 17 4269259 4366628 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2G2 21 44768580 44802019 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2H 7 129830732 129952949 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2I 16 1308880 1327018 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2J1 6 89326625 89352848 FALSE 476 -0.515507596626176 32 89098866 93240402 1 2 1 1 2 1 4141536 1 14 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2J2 1 1253909 1273885 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2K 4 39698044 39782792 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2L3 22 21549447 21624034 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2L5 13 30422488 30428616 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2L6 11 57551656 57568284 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2M 19 58555712 58558960 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2N 12 93405673 93442262 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2O 17 76389451 76453206 FALSE 1233 -0.165175295371717 52 76304462 76733053 0.426118104232275 3 NA 0.426118104232275 3 NA 428591 NA 15 25 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2Q1 1 154548577 154559028 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 13 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2Q2 15 75843285 75901078 FALSE 1040 -0.419253708499368 37 75468964 75843853 NA 2 NA NA 2 NA 374889 NA 7 14 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2Q2L 15 84172490 84182234 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2QL1 5 6448623 6494909 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2R2 9 33817567 33920404 FALSE 662 -0.688244417473182 25 33568791 34220857 0.276933305076759 1 0 0.276933305076759 1 0 652066 1 6 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2S 19 55399745 55407777 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2T 1 202331657 202341980 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2U 1 64203627 64267368 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2V1 20 50081124 50115959 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 7 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2V2 8 48008400 48064708 FALSE 615 -0.446394573939047 37 47961169 54147649 NA 2 NA NA 2 NA 6186480 NA 18 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2W 8 73780097 73878910 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE2Z 17 48908369 48929056 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE3A 15 25333728 25439056 FALSE 1003 -0.502789479587892 32 20536449 32696620 1 2 1 1 2 1 12160171 1 59 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE3B 12 109477402 109536705 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 28 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE3C 7 157138913 157269372 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE3D 6 82892398 83065841 FALSE 472 -0.591733011014763 26 68639362 87151836 0.593443012170704 2 0 0.593443012170704 2 0 18512474 2 61 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE4A 11 118359585 118399211 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 22 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBE4B 1 10032832 10181239 FALSE 2 -0.610182284590565 28 9723965 11101537 NA 2 NA NA 2 NA 1377572 NA 21 29 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBFD1 16 23557362 23574389 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBIAD1 1 11273206 11296049 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBL3 13 29764371 29850684 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBL4A 23 154483717 154486670 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBL4B 1 110112468 110113945 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBL5 19 9827892 9830115 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBL7 15 74445977 74461182 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBLCP1 5 159263081 159286040 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBN1 16 4846665 4882360 FALSE 1082 -0.411323629880746 37 4765612 6654555 NA 2 NA NA 2 NA 1888943 NA 13 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBN2 7 139230356 139308236 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 26 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBOX5 20 3107573 3160196 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 18 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBP1 3 33388336 33441371 FALSE 244 -0.652725823986803 25 31990293 36988261 0.276933305076759 1 0 0.276933305076759 1 0 4997968 1 23 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBQLN1 9 83659963 83708203 FALSE 671 -0.885895454769647 13 78236434 83956476 0.522719719214577 1 0 0.522719719214577 1 0 5720042 1 14 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBQLN2 23 56563639 56567868 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBQLN3 11 5507300 5509985 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 8 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBQLN4 1 156035301 156053794 FALSE 62 -0.340576405517037 44 155914158 156294525 0.18904974046126 3 NA 0.18904974046126 3 NA 380367 NA 18 13 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBQLNL 11 5514393 5516705 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBR1 15 42942897 43106113 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 49 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBR2 6 42564062 42693504 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 49 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBR3 2 169827458 170084131 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 42 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBR4 1 19074506 19210276 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 113 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBR5 8 102253012 102412841 FALSE 631 1.66601826093658 102 102252345 102652000 0.593481580287395 13 NA 0.593481580287395 13 NA 399655 NA 3 69 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBR7 14 93207056 93229215 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBTD1 10 97498868 97571209 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBTD2 5 172209640 172284071 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBTF 17 44205033 44221626 FALSE 1193 -0.231232493589901 47 43641949 45262051 0.593443012170704 3 1 0.593443012170704 3 1 1620102 2 47 19 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBTFL1 11 90085950 90087131 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN1 11 62676498 62679117 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN10 1 20186085 20196048 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN11 1 26281328 26318363 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN2A 2 23927285 24004909 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN2B 8 58411264 58451501 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN4 2 135741619 135785055 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN6 19 4444999 4457822 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN7 3 196347662 196432474 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UBXN8 8 30732247 30767006 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCHL1 4 41256413 41268455 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCHL3 13 75549480 75606020 FALSE 949 -0.79745272696754 18 72783611 75800864 0.387809979850725 1 0 0.387809979850725 1 0 3017253 1 7 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCHL5 1 193012250 193060080 FALSE 76 -0.350034419038543 44 186136896 193059961 0.18904974046126 3 NA 0.18904974046126 3 NA 6923065 NA 17 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCK1 9 131523801 131531268 FALSE 700 -0.522958011369121 34 131260925 132889932 NA 2 NA NA 2 NA 1629007 NA 17 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCK2 1 165827531 165911618 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCKL1 20 63939829 63956415 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCMA 10 13221767 13234334 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCN 2 27307400 27308445 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCN2 3 48561727 48563773 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCN3 10 5365009 5374692 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 3 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCP1 4 140559434 140568805 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCP2 11 73974667 73983307 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UCP3 11 74000281 74009435 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UEVLD 11 18529609 18588747 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UFC1 1 161152776 161158856 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UFD1 22 19449910 19479215 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UFL1 6 96521595 96555276 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UFM1 13 38349849 38363619 FALSE 943 -0.727736885154185 19 32401907 40550695 0.593443012170704 1 0 0.593443012170704 1 0 8148788 1 31 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UFSP1 7 100888723 100889718 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 2 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UFSP2 4 185399540 185425985 FALSE 363 -0.76158769250084 16 184629370 186582820 0.593443012170704 1 0 0.593443012170704 1 0 1953450 1 22 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGCG 9 111896766 111935369 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGDH 4 39498755 39528311 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGGT1 2 128091200 128195677 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 41 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGGT2 13 95801580 96053482 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 39 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGP2 2 63840940 63891562 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A1 2 233760248 233773299 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 18 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A10 2 233636454 233773305 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 48 9 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A3 2 233729108 233773299 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 24 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A4 2 233718778 233773299 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 28 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A5 2 233712992 233773299 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 32 5 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A6 2 233691607 233773300 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 36 8 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A7 2 233681938 233773299 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 40 9 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A8 2 233617645 233773310 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 52 9 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT1A9 2 233671853 233773300 FALSE 226 0.238054169064979 64 233617878 233773251 0.593443012170704 4 NA 0.593443012170704 4 NA 155373 NA 9 44 9 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2A1 4 69588417 69653249 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2A2 4 69589309 69639642 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2A3 4 68928463 68951791 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2B10 4 68815993 68831196 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2B11 4 69199951 69214731 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2B15 4 68646630 68670628 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2B28 4 69280499 69295050 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2B4 4 69480165 69526014 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT2B7 4 69051363 69112987 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT3A1 5 35951010 36001028 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT3A2 5 36035017 36071358 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UGT8 4 114598455 114678224 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UHMK1 1 162497251 162529629 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UHRF1 19 4903080 4962154 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UHRF1BP1 6 34792015 34883138 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UHRF1BP1L 12 100028455 100142848 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UHRF2 9 6413151 6507054 FALSE 651 -0.814936066829059 15 5656632 7799698 0.449390955025597 1 0 0.449390955025597 1 0 2143066 1 11 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UIMC1 5 176905005 177022633 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ULBP1 6 149964007 149973710 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 6 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ULBP2 6 149942000 149949235 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ULBP3 6 150063150 150069095 FALSE 502 -0.707704283731209 21 149727245 150398271 0.328777186374237 1 0 0.328777186374237 1 0 671026 1 12 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ULK1 12 131894651 131923167 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ULK2 17 19770829 19867936 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ULK3 15 74836116 74843346 FALSE 1038 -0.500406298779833 34 73739949 75368577 NA 2 NA NA 2 NA 1628628 NA 35 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ULK4 3 41246599 41962430 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 37 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UMAD1 7 7640711 7968020 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UMOD 16 20333052 20356301 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UMODL1 21 42062959 42143453 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 31 6 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UMPS 3 124730366 124749273 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC119 17 28546707 28552668 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC119B 12 120710435 120723640 FALSE 923 -0.444415753391229 37 120164721 120903912 NA 2 NA NA 2 NA 739191 NA 20 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC13A 19 17601328 17688365 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 49 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC13B 9 35161992 35405338 FALSE 665 -0.437030164537377 35 35089175 36828292 1 2 1 1 2 1 1739117 1 35 42 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC13C 15 53978201 54633414 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 45 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC13D 17 75827225 75844717 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 30 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC45A 15 90930180 90954093 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC45B 17 35147817 35189345 FALSE 1167 -0.279751332463752 46 35121016 35577399 0.261157737158964 3 NA 0.261157737158964 3 NA 456383 NA 13 21 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC50 2 98608579 98618515 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC5A 5 176810477 176880898 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 18 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC5B 10 71212570 71302864 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC5C 4 95162504 95549206 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 20 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC5CL 6 41026911 41039217 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC5D 8 35235457 35796550 FALSE 600 -1.17029510777563 6 33372626 36935533 0.593443012170704 1 0 0.593443012170704 1 0 3562907 1 7 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC79 14 93333219 93707876 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 61 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC80 2 209771993 209999300 FALSE 209 -0.825454486482312 15 208273729 210677999 0.449390955025597 1 0 0.449390955025597 1 0 2404270 1 10 68 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC93A 6 167271169 167316019 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNC93B1 11 67991104 68004982 FALSE 793 -0.325275457173497 44 67435963 68433859 0.18904974046126 3 NA 0.18904974046126 3 NA 997896 NA 23 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNCX 7 1232907 1237318 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNG 12 109097574 109110992 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNK 17 75784771 75825799 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UNKL 16 1363205 1414751 FALSE 1066 -0.67596852996829 22 1205277 1809304 1 2 1 1 2 1 604027 1 29 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPB1 22 24494107 24528390 FALSE 1426 -0.756355282397274 16 23838585 28679663 0.593443012170704 1 0 0.593443012170704 1 0 4841078 1 40 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPF1 19 18831938 18868236 FALSE 1321 -0.542653237433329 31 18281426 19138451 NA 2 NA NA 2 NA 857025 NA 28 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPF2 10 11920022 12043170 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 26 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPF3A 13 114281584 114305817 FALSE 961 -0.800545735904909 18 113407726 114326241 0.387809979850725 1 0 0.387809979850725 1 0 918515 1 14 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPF3B 23 119805311 119852998 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPK1A 19 35666516 35678483 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPK1B 3 119173517 119205153 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPK2 11 118925164 118958559 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPK3A 22 45284982 45295874 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPK3B 7 76510428 76516521 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPK3BL1 7 102637025 102642791 FALSE 553 0.0348043968353301 57 102285212 106112535 0.397594064138395 4 0 0.397594064138395 4 0 3827323 4 40 1 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPP1 7 48088628 48108733 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPP2 2 157876702 158136154 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UPRT 23 75274085 75304600 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCC1 20 35302566 35412141 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCC2 6 33694293 33711727 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCC3 11 62670273 62673687 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 2 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCR10 22 29767369 29770413 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCR11 19 1597172 1605490 FALSE 1271 -0.270864865468285 46 1229091 1605373 0.261157737158964 3 NA 0.261157737158964 3 NA 376282 NA 21 2 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCRB 8 96225920 96235634 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 5 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCRC1 3 48599002 48610976 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCRC2 16 21952660 21983660 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCRFS1 19 29205321 29213541 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCRH 1 46303631 46316776 FALSE 18 -0.517087325630363 34 46045889 46961583 NA 2 NA NA 2 NA 915694 NA 21 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCRHL 1 15807169 15809348 FALSE 6 -0.606288318524394 28 15101779 15922294 NA 2 NA NA 2 NA 820515 NA 18 2 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UQCRQ 5 132866560 132868031 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 URAD 13 27977714 27988654 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 URB1 21 32311018 32393026 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 47 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 URB2 1 229626234 229660199 FALSE 97 -0.458381005875261 35 229530291 234478180 1 2 1 1 2 1 4947889 1 30 23 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 URGCP 7 43875894 43926411 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 16 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 URGCP-MRPS24 7 43866558 43906589 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 URI1 19 29923644 30016608 FALSE 1326 -0.282409176824691 46 29923773 32382993 0.261157737158964 3 NA 0.261157737158964 3 NA 2459220 NA 4 15 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 URM1 9 128371319 128392016 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UROC1 3 126481281 126517773 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 21 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UROD 1 45012147 45015575 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UROS 10 125784980 125823285 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USB1 16 57999546 58021618 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USE1 19 17215346 17219829 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USF1 1 161039251 161045977 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USF2 19 35268978 35279821 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USF3 3 113648385 113696646 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 29 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USH1C 11 17493895 17544416 FALSE 765 -0.667846834942592 22 14457780 17645892 1 2 1 1 2 1 3188112 1 19 30 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USH1G 17 74916084 74923256 FALSE 1226 -0.112791550821433 53 74836295 75596531 0.593443012170704 3 1 0.593443012170704 3 1 760236 2 28 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USH2A 1 215622894 216423396 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 98 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USHBP1 19 17249176 17282786 FALSE 1315 -0.69387299742516 22 16355764 17786611 1 2 1 1 2 1 1430847 1 43 28 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USO1 4 75724593 75814286 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 24 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP1 1 62436297 62451804 FALSE 24 -0.555329076430199 29 59321707 64830866 1 2 1 1 2 1 5509159 1 22 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP10 16 84699978 84779922 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP11 23 47232690 47248328 FALSE 1474 -0.325556439763856 44 47199062 47467488 0.18904974046126 3 NA 0.18904974046126 3 NA 268426 NA 5 23 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP12 13 27066142 27171896 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP13 3 179652755 179789401 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP14 18 158383 214629 FALSE 1242 -0.947245719308746 11 47460 712608 0.593443012170704 1 0 0.593443012170704 1 0 665148 1 8 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP15 12 62260338 62417431 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP16 21 29024629 29054488 FALSE 1400 -0.654393601241904 22 26566272 34716444 1 2 1 1 2 1 8150172 1 86 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L1 8 7332387 7333979 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 7 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L10 4 9210657 9212608 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 1 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L11 4 9215405 9217356 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L17 4 9243879 9245830 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 3 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L18 4 9248630 9250581 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 2 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L2 8 12137168 12139077 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 7 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L22 4 9267619 9269570 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 3 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L4 8 7337115 7338707 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP17L7 8 12132417 12134438 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 7 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP18 22 18149899 18177397 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP19 3 49108046 49120938 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 29 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP2 11 119355215 119381726 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 16 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP20 9 129834698 129881838 FALSE 695 -0.751937959899922 18 129829569 130284582 0.387809979850725 1 0 0.387809979850725 1 0 455013 1 6 26 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP21 1 161159450 161165723 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP22 17 20999593 21043760 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP24 1 55066359 55215113 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 70 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP25 21 15730025 15880069 FALSE 1399 -0.91520578984513 12 10413729 26480405 0.593443012170704 1 0 0.593443012170704 1 0 16066676 1 21 28 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP26 23 133024631 133097109 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP27X 23 49879948 49882565 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP28 11 113797874 113875570 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 29 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP29 19 57119138 57131926 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP3 15 63504511 63594640 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP30 12 109023089 109088026 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP31 16 23061406 23149270 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 23 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP32 17 60179094 60422470 FALSE 1208 -0.274405632017478 46 59953065 60500374 0.261157737158964 3 NA 0.261157737158964 3 NA 547309 NA 7 36 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP33 1 77695987 77759852 FALSE 28 -0.600587955291451 27 74026844 77936024 1 2 1 1 2 1 3909180 1 22 24 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP34 2 61187463 61470769 FALSE 142 -0.73704227505101 21 60942397 61470646 0.328777186374237 1 0 0.328777186374237 1 0 528249 1 5 87 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP35 11 78188812 78214711 FALSE 805 -0.32399291544778 43 77590244 86068681 0.593443012170704 2 0 0.593443012170704 2 0 8478437 2 30 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP36 17 78787381 78841441 FALSE 1235 -0.244632903856009 47 76738382 80390186 0.593443012170704 3 1 0.593443012170704 3 1 3651804 2 38 23 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP37 2 218450251 218568361 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 23 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP38 4 143184917 143223830 FALSE 356 0.253513639790623 64 142077805 143185684 0.593443012170704 4 NA 0.593443012170704 4 NA 1107879 NA 2 17 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP39 2 85602856 85649282 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP4 3 49277831 49340712 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP40 2 233475520 233566782 FALSE 225 -0.468977122371387 35 230506446 233565497 1 2 1 1 2 1 3059051 1 38 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP41 22 20350578 20390758 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 12 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP42 7 6104884 6161564 FALSE 520 -0.273341933736742 46 6006303 6387310 0.261157737158964 3 NA 0.261157737158964 3 NA 381007 NA 8 24 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP43 17 9644698 9729691 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP44 12 95516560 95551490 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP45 6 99432379 99521728 FALSE 478 -0.579299973471842 30 95586829 106069771 0.398146319473827 2 0 0.398146319473827 2 0 10482942 2 27 19 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP46 4 52590972 52659335 FALSE 336 -0.440508007098128 37 51911157 54241294 NA 2 NA NA 2 NA 2330137 NA 14 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP47 11 11841423 11959323 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 32 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP48 1 21678298 21783606 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP49 6 41789896 41895361 FALSE 466 -0.660913019906284 25 41736173 41931748 0.276933305076759 1 0 0.276933305076759 1 0 195575 1 9 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP5 12 6852128 6866632 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 21 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP50 15 50500562 50546708 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP51 23 55484616 55489202 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP53 4 119212587 119295517 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP54 10 73497538 73625953 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 31 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP6 17 5116438 5175034 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 33 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP6NL 10 11453946 11611754 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP7 16 8892094 8964514 FALSE 1083 -0.589688675995642 28 7052039 9116696 NA 2 NA NA 2 NA 2064657 NA 10 32 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP8 15 50424380 50514419 FALSE 1028 -0.519636159547001 34 49541781 51105113 NA 2 NA NA 2 NA 1563332 NA 12 23 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USP9X 23 41085635 41236579 FALSE 1468 -0.326446288418871 44 40143046 41232371 0.18904974046126 3 NA 0.18904974046126 3 NA 1089325 NA 6 51 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 USPL1 13 30617693 30660770 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 17 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UST 6 148747328 149076990 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTF1 10 133230274 133231558 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP11 1 38009258 38024824 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP14A 23 129906121 129929761 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 17 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP14C 13 52024691 52033600 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP15 5 73565443 73583377 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP18 17 51260528 51297936 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 14 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP20 12 101280109 101386616 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 65 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP23 8 116766503 116849463 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 16 1 TRUE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP25 1 209828007 209857565 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP3 4 70688479 70690551 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP4 16 69131291 69231130 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTP6 17 31860899 31901765 FALSE 1163 -0.787469030098252 18 31391904 31901587 0.387809979850725 1 0 0.387809979850725 1 0 509683 1 3 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTRN 6 144285701 144853034 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 77 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTS2 1 7843083 7853512 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTS2B 3 191267168 191330536 FALSE 317 -0.574439467955028 30 189957970 193635396 0.398146319473827 2 0 0.398146319473827 2 0 3677426 2 16 6 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UTS2R 17 82374230 82375586 FALSE 1240 -0.0826158290786497 53 81460531 82444420 0.593443012170704 3 1 0.593443012170704 3 1 983889 2 47 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UVRAG 11 75815167 76143195 FALSE 800 -0.534359574257993 31 75796365 76445038 NA 2 NA NA 2 NA 648673 NA 6 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UVSSA 4 1347266 1395992 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 20 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UXS1 2 106093303 106194339 FALSE 160 -0.706666288639263 21 98600754 106194257 0.328777186374237 1 0 0.328777186374237 1 0 7593503 1 48 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 UXT 23 47651798 47659161 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAC14 16 70687439 70801161 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAMP1 12 6462237 6470987 FALSE 836 -0.3341070784257 42 6016589 6567809 0.550845998803593 3 0 0.550845998803593 3 0 551220 3 15 6 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAMP2 17 8159149 8163546 FALSE 1147 -0.887294624890009 13 8096639 8189086 0.522719719214577 1 0 0.522719719214577 1 0 92447 1 7 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAMP3 1 7771269 7781432 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAMP4 1 171700160 171742247 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAMP5 2 85584408 85593412 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAMP8 2 85561562 85582031 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 3 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VANGL1 1 115641953 115698224 FALSE 40 -0.536195164432015 31 114718137 115663936 NA 2 NA NA 2 NA 945799 NA 7 11 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VANGL2 1 160400586 160428678 FALSE 67 -0.359499644047792 38 159929338 162599342 1 2 1 1 2 1 2670004 1 67 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAPA 18 9914002 9960021 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAPB 20 58389122 58451101 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VARS 6 31777518 31795953 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 27 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VARS2 6 30908242 30926459 FALSE 443 -0.504638998837716 33 30654784 30948554 0.593443012170704 2 0 0.593443012170704 2 0 293770 2 12 43 7 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VASH1 14 76762189 76783015 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VASH2 1 212950520 212992037 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VASN 16 4371848 4383528 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VASP 19 45506579 45526983 FALSE 1349 -0.525121864450037 32 45486141 46850161 1 2 1 1 2 1 1364020 1 44 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAT1 17 43014605 43025123 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAT1L 16 77788530 77980107 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAV1 19 6772714 6857366 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 27 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAV2 9 133761894 133992604 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 31 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAV3 1 107571160 107965144 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 28 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAX1 10 117128521 117138301 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VAX2 2 70900590 70965373 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VBP1 23 155197007 155239817 FALSE 1526 -0.257796737159095 49 154552160 155545210 0.331933131290263 3 NA 0.331933131290263 3 NA 993050 NA 23 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCAM1 1 100719742 100739045 FALSE 35 -0.535474219966199 29 92513965 108820669 1 2 1 1 2 1 16306704 1 64 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCAN 5 83471465 83582303 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 47 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCL 10 73995193 74121363 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCP 9 35056064 35073249 FALSE 663 -0.404238407186234 41 34234269 35072307 NA 2 NA NA 2 NA 838038 NA 26 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCPIP1 8 66628487 66667217 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 16 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCPKMT 14 50108632 50116600 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCX 23 7842262 7844143 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCX2 23 8169944 8171267 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCX3A 23 6533618 6535118 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VCX3B 23 8464830 8466510 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 4 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VDAC1 5 133971915 134005133 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VDAC2 10 75210154 75231448 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VDAC3 8 42391624 42405897 FALSE 613 -0.754832666481729 18 42338619 47735376 0.387809979850725 1 0 0.387809979850725 1 0 5396757 1 15 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VDR 12 47841537 47943048 FALSE 870 -0.687554661257112 25 45922184 47968206 0.276933305076759 1 0 0.276933305076759 1 0 2046022 1 13 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VEGFA 6 43770184 43786487 FALSE 469 -0.153168975981227 52 43767088 44305139 0.426118104232275 3 NA 0.426118104232275 3 NA 538051 NA 14 26 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VEGFB 11 64234538 64238793 FALSE 786 -0.385989306795585 41 63719110 64357043 NA 2 NA NA 2 NA 637933 NA 28 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VEGFC 4 176683538 176792727 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VEGFD 23 15345591 15384376 FALSE 1454 -0.519663593333984 34 12910475 15587897 NA 2 NA NA 2 NA 2677422 NA 22 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VENTX 10 133237404 133241929 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VEPH1 3 157259742 157533619 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VEZF1 17 57971547 57988259 FALSE 1203 -0.207608500914268 52 57885234 58352045 0.426118104232275 3 NA 0.426118104232275 3 NA 466811 NA 14 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VEZT 12 95217746 95302790 FALSE 904 -0.442424124453206 35 92421158 101086680 1 2 1 1 2 1 8665522 1 41 21 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VGF 7 101162509 101165593 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VGLL1 23 136532152 136556807 FALSE 1518 -0.532241026237508 31 136350124 136779443 NA 2 NA NA 2 NA 429319 NA 6 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VGLL2 6 117265558 117273565 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VGLL3 3 86876388 86991119 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VGLL4 3 11556070 11771350 FALSE 235 -0.869360706142929 12 10157162 12287662 0.593443012170704 1 0 0.593443012170704 1 0 2130500 1 15 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VHL 3 10141008 10152220 TRUE 234 0.284123196163012 66 10021453 10155649 0.593443012170704 4 0 0.593443012170704 4 0 134196 4 4 16 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VHLL 1 156298624 156299299 FALSE 63 -0.425657019699934 37 156294857 156860987 NA 2 NA NA 2 NA 566130 NA 23 2 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIL1 2 218419092 218453295 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VILL 3 37988059 38007188 FALSE 246 -0.75776849656558 18 37053900 38137011 0.387809979850725 1 0 0.387809979850725 1 0 1083111 1 8 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIM 10 17228259 17237593 FALSE 710 -0.695287307151199 22 10796855 26860843 1 2 1 1 2 1 16063988 1 78 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIP 6 152750798 152759765 FALSE 508 -0.708636599973174 19 152129628 156771051 0.593443012170704 1 0 0.593443012170704 1 0 4641423 1 14 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIPAS39 14 77426675 77457952 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIPR1 3 42489299 42537573 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIPR2 7 159028175 159144957 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIRMA 8 94487693 94553529 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 33 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VIT 2 36696690 36814792 FALSE 127 -0.559590180517904 31 33599162 38960649 NA 2 NA NA 2 NA 5361487 NA 25 17 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VKORC1 16 31090842 31095980 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VKORC1L1 7 65873166 65959563 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VLDLR 9 2621834 2660053 FALSE 646 -0.925899765728366 13 2622243 4860145 0.522719719214577 1 0 0.522719719214577 1 0 2237902 1 11 20 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VMA21 23 151396515 151409364 FALSE 1522 -0.468653153264543 37 150592603 151672444 NA 2 NA NA 2 NA 1079841 NA 7 3 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VMAC 19 5904858 5910853 FALSE 1284 -0.693508961204167 22 5590337 6534666 1 2 1 1 2 1 944329 1 35 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VMO1 17 4785285 4786433 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VMP1 17 59707192 59842255 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 11 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VN1R1 19 57454790 57457142 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VN1R2 19 53258292 53261837 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VN1R4 19 53266676 53267723 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VNN1 6 132681590 132714049 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VNN2 6 132743870 132763459 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VNN3 6 132722787 132734765 FALSE 491 -0.62582317972355 26 127155351 134029710 0.593443012170704 2 0 0.593443012170704 2 0 6874359 2 42 5 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VOPP1 7 55436056 55572988 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPREB1 22 22244675 22245515 FALSE 1420 -0.805714594408242 15 21773018 22556827 0.449390955025597 1 0 0.449390955025597 1 0 783809 1 7 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPREB3 22 23752743 23754468 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 3 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS11 11 119067692 119081978 FALSE 817 -0.161858631684658 52 118527593 119195457 0.426118104232275 3 NA 0.426118104232275 3 NA 667864 NA 26 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS13A 9 77177353 77421541 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 80 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS13B 8 99013266 99877580 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 74 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS13C 15 61852389 62060473 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 93 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS13D 1 12230030 12512047 FALSE 4 -0.607795028112643 26 11267566 12939075 0.593443012170704 2 0 0.593443012170704 2 0 1671509 2 33 83 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS16 20 2840703 2866732 FALSE 1363 -0.20635868218572 52 2664192 3237617 0.426118104232275 3 NA 0.426118104232275 3 NA 573425 NA 19 24 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS18 15 40894430 40903975 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS25 17 42773436 42779599 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS26A 10 69123512 69172861 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS26B 11 134224645 134247792 FALSE 825 -0.168440947643059 52 133845181 134345104 0.426118104232275 3 NA 0.426118104232275 3 NA 499923 NA 9 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS26C 21 37223420 37267919 FALSE 1403 -0.675914677698791 22 36036283 38367672 1 2 1 1 2 1 2331389 1 17 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS28 8 144423601 144428563 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS29 12 110491097 110502117 FALSE 911 -0.491955923453687 37 109388735 111342048 NA 2 NA NA 2 NA 1953313 NA 27 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS33A 12 122229564 122266521 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS33B 15 90998416 91022603 FALSE 1057 -0.647640996255551 25 90916222 92655625 0.276933305076759 1 0 0.276933305076759 1 0 1739403 1 11 23 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS35 16 46656132 46689518 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS35L 16 19555240 19706793 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS36 13 52412602 52450628 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS37A 8 17246571 17302427 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS37B 12 122865328 122896444 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS37C 11 61130256 61161617 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS37D 7 73667825 73672112 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS39 15 42158701 42208316 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 26 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS41 7 38722963 38932394 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 29 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS45 1 150067279 150145329 FALSE 53 -0.390360737719585 38 146020223 150563176 1 2 1 1 2 1 4542953 1 52 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS4A 16 69311356 69326939 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS4B 18 63389190 63422483 FALSE 1265 -0.756902987493009 17 63331834 70088101 0.593443012170704 1 0 0.593443012170704 1 0 6756267 1 21 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS50 7 93232340 93361121 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 29 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS51 11 65089324 65111860 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 14 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS52 6 33250272 33272047 FALSE 456 -0.636119947778167 28 33164464 33263766 NA 2 NA NA 2 NA 99302 NA 6 20 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS53 17 508668 721717 FALSE 1133 -0.724749754911519 21 148164 1298254 0.328777186374237 1 0 0.328777186374237 1 0 1150090 1 14 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS54 2 63892146 64019072 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS72 1 151169987 151195321 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS8 3 184812143 185052614 FALSE 306 -0.731204027242427 21 184824760 185282991 0.328777186374237 1 0 0.328777186374237 1 0 458231 1 4 48 7 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VPS9D1 16 89707134 89720986 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VRK1 14 96797304 96931722 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VRK2 2 57907629 58159920 FALSE 138 -0.855981369957181 15 55336671 58154699 0.449390955025597 1 0 0.449390955025597 1 0 2818028 1 7 16 1 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VRK3 19 49976467 50025946 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VRTN 14 74303069 74360008 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 9 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSIG1 23 108044970 108079184 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSIG10 12 118063593 118136026 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 13 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSIG10L 19 51331536 51342124 FALSE 1355 -0.569247404165676 29 50417791 51337424 1 2 1 1 2 1 919633 1 40 16 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSIG2 11 124747472 124752238 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSIG4 23 66021738 66040125 FALSE 1487 -0.50792792543453 34 64268792 66605144 NA 2 NA NA 2 NA 2336352 NA 8 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSIG8 1 159854316 159862657 FALSE 66 -0.523826122985154 32 156951748 159929018 1 2 1 1 2 1 2977270 1 48 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSIR 10 71747559 71773498 FALSE 725 -0.563372940228978 29 68722594 73640000 1 2 1 1 2 1 4917406 1 58 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSNL1 2 17539126 17657018 FALSE 113 -0.742826346277415 18 16552911 17753891 0.387809979850725 1 0 0.387809979850725 1 0 1200980 1 5 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSTM1 19 54040825 54063953 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSTM2A 7 54542325 54571080 FALSE 533 -0.636373738560084 28 50463408 55129820 NA 2 NA NA 2 NA 4666412 NA 8 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSTM2B 19 29526499 29564479 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSTM2L 20 37903104 37945350 FALSE 1376 -0.53194026528904 31 37519191 38641722 NA 2 NA NA 2 NA 1122531 NA 13 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSTM4 10 49014245 49115509 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSTM5 11 93818232 93850531 FALSE 807 -0.35775223663885 38 86302481 94410574 1 2 1 1 2 1 8108093 1 36 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSX1 20 25070885 25082365 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VSX2 14 74239472 74262738 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VTA1 6 142147162 142224689 FALSE 498 -0.589564023697557 28 138096468 142443388 NA 2 NA NA 2 NA 4346920 NA 18 8 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VTCN1 1 117143587 117210960 FALSE 43 2.17787205767236 118 117143870 117156882 0.593481580287395 20 NA 0.593481580287395 20 NA 13012 NA 1 14 3 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VTI1A 10 112446998 112818744 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 9 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VTI1B 14 67647075 67674831 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VTN 17 28367276 28373091 FALSE 1161 -0.433633470402112 36 28364316 31045435 0.593443012170704 2 0 0.593443012170704 2 0 2681119 2 53 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA1 1 1434861 1442882 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA2 10 114239330 114291513 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 17 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA3A 16 22092538 22156966 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 33 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA3B 2 98087116 98313299 FALSE 157 -0.743450543902085 18 97757127 98389721 0.387809979850725 1 0 0.387809979850725 1 0 632594 1 3 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA5A 11 124115362 124147721 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 18 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA5B1 1 20290919 20354894 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 25 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA5B2 3 184230429 184242329 FALSE 305 -0.314292378147457 43 184105261 184711720 0.593443012170704 2 0 0.593443012170704 2 0 606459 2 20 21 6 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA7 6 31765590 31777294 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 19 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWA8 13 41566837 41961120 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 45 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWC2 7 49773661 49921950 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWC2L 2 214411065 214578959 FALSE 211 -0.404833419723938 41 211387031 214575792 NA 2 NA NA 2 NA 3188761 NA 4 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWCE 11 61258286 61295424 FALSE 782 -0.442021099576623 36 61017991 62519371 0.593443012170704 2 0 0.593443012170704 2 0 1501380 2 37 22 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWDE 7 12330885 12403941 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 37 5 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VWF 12 5948874 6124770 FALSE 835 -0.715534121412419 21 5565588 6016055 0.328777186374237 1 0 0.328777186374237 1 0 450467 1 2 59 5 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 VXN 8 66493208 66518524 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WAC 10 28532493 28623112 FALSE 713 -0.622423884840657 28 27165182 29292675 NA 2 NA NA 2 NA 2127493 NA 9 16 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WAPL 10 86435256 86521815 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WARS 14 100333788 100376805 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WARS2 1 119031216 119140671 FALSE 46 -0.673684454186075 25 117628427 119415546 0.276933305076759 1 0 0.276933305076759 1 0 1787119 1 7 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WAS 23 48676596 48691427 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASF1 6 110099819 110180004 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASF2 1 27404226 27490158 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASF3 13 26557703 26688948 FALSE 937 -0.80687391263168 14 23341699 27988468 0.593443012170704 1 0 0.593443012170704 1 0 4646769 1 32 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASHC1 9 14521 73865 FALSE 641 -0.549545230300705 31 14889 175747 NA 2 NA NA 2 NA 160858 NA 3 7 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASHC2A 10 50067888 50133506 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 24 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASHC2C 10 45727200 45792961 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 28 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASHC3 12 102012927 102062149 FALSE 905 -0.677621565242486 22 101094306 102197089 1 2 1 1 2 1 1102783 1 14 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASHC4 12 105107324 105169134 FALSE 908 -0.497272210092268 32 103689930 105367509 1 2 1 1 2 1 1677579 1 17 33 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASHC5 8 125024260 125091840 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 28 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WASL 7 123681935 123749067 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WBP1 2 74458329 74460891 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WBP11 12 14784579 14803540 FALSE 854 -0.525799235303079 32 12726039 18090108 1 2 1 1 2 1 5364069 1 31 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WBP1L 10 102743901 102834516 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WBP2 17 75845699 75856507 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WBP2NL 22 41998725 42058456 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WBP4 13 41061274 41084006 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDCP 2 24029340 24049575 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDFY1 2 223855716 223945387 FALSE 220 -0.844944357268913 15 222474562 224038542 0.449390955025597 1 0 0.449390955025597 1 0 1563980 1 10 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDFY2 13 51584455 51767707 FALSE 947 -0.766573318598484 16 48490136 72747096 0.593443012170704 1 0 0.593443012170704 1 0 24256960 1 57 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDFY3 4 84669610 84966391 FALSE 346 -0.603477635201886 26 83590206 98658179 0.593443012170704 2 0 0.593443012170704 2 0 15067973 2 48 72 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDFY4 10 48684876 48982956 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 73 16 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDHD1 14 54938950 55027105 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 27 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDPCP 2 63121383 63827843 FALSE 144 -0.665018391230695 25 61826440 66464137 0.276933305076759 1 0 0.276933305076759 1 0 4637697 1 21 32 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR1 4 10074339 10116949 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 16 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR11 10 120851175 120909524 FALSE 746 -0.626822001591585 26 113553167 120908645 0.593443012170704 2 0 0.593443012170704 2 0 7355478 2 47 29 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR12 2 202874782 203014798 FALSE 205 -0.632030014956476 26 201288714 203854006 0.593443012170704 2 0 0.593443012170704 2 0 2565292 2 22 30 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR13 23 48590042 48608867 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR17 4 176065834 176182818 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR18 19 984271 998438 FALSE 1269 -0.278076110491169 45 460531 1154259 0.561906404904972 3 0 0.561906404904972 3 0 693728 3 34 11 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR19 4 39182404 39285810 FALSE 332 -0.656401945513028 22 38829302 41697188 1 2 1 1 2 1 2867886 1 22 36 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR20 14 102139503 102224847 FALSE 995 1.54332769316775 98 102080824 102140110 0.593481580287395 12 NA 0.593481580287395 12 NA 59286 NA 2 15 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR24 16 684622 690444 FALSE 1065 -0.623511311991621 27 653473 1204372 1 2 1 1 2 1 550899 1 22 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR25 14 100376418 100530303 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR26 1 224385143 224437033 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR27 6 169457212 169702067 FALSE 513 -0.721642732124556 19 165280135 170584567 0.593443012170704 1 0 0.593443012170704 1 0 5304432 1 34 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR3 1 117929720 117966542 FALSE 46 -0.673684454186075 25 117628427 119415546 0.276933305076759 1 0 0.276933305076759 1 0 1787119 1 7 27 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR31 9 113313222 113340298 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR33 2 127701022 127811187 FALSE 172 -0.731519276480728 19 127295844 132781168 0.593443012170704 1 0 0.593443012170704 1 0 5485324 1 41 33 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR34 9 128633661 128656787 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR35 2 19910260 19990131 FALSE 115 -0.355122836306034 38 17816758 25164759 1 2 1 1 2 1 7348001 1 38 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR36 5 111091716 111130502 FALSE 388 -0.534923252471417 29 87394396 112419080 1 2 1 1 2 1 25024684 1 55 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR37 10 1049538 1132384 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 14 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR38 9 124853417 124857890 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR4 21 42843094 42879568 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 12 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR41 5 77425970 77620611 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR43 2 28894643 28948222 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR44 23 118346073 118449961 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 22 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR45 23 49071470 49101170 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR45B 17 82614562 82648553 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR46 6 33279108 33289527 FALSE 457 -0.585863588832874 28 33264074 33313388 NA 2 NA NA 2 NA 49314 NA 7 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR47 1 108970214 109042113 FALSE 36 -0.448049468789659 36 108823486 109761780 0.593443012170704 2 0 0.593443012170704 2 0 938294 2 29 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR48 3 39051998 39096671 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR49 3 167478684 167653983 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR5 9 134135365 134159968 FALSE 702 -0.575425007540884 29 132988172 134139901 1 2 1 1 2 1 1151729 1 28 13 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR53 3 196554177 196568674 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR54 2 74421678 74425755 FALSE 151 -0.594802026354481 28 74135624 79159365 NA 2 NA NA 2 NA 5023741 NA 38 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR55 5 140664676 140674124 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR59 16 74871367 75000173 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 29 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR5B 3 122412332 122416051 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR6 3 49007062 49015953 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR60 7 158856578 158956747 FALSE 580 -0.39555687479501 38 152759862 159144789 1 2 1 1 2 1 6384927 1 20 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR61 15 78277835 78299794 FALSE 1041 -0.702699193877631 25 75844427 78590583 0.276933305076759 1 0 0.276933305076759 1 0 2746156 1 25 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR62 19 36054881 36105106 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 35 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR63 1 84999147 85133138 FALSE 31 -0.554165935772287 31 77969078 85258771 NA 2 NA NA 2 NA 7289693 NA 23 35 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR64 1 241652278 241802133 FALSE 102 -0.423745617364843 37 241532411 243341093 NA 2 NA NA 2 NA 1808682 NA 10 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR66 12 121917862 122003927 FALSE 927 -0.556106487244151 31 121843771 122003709 NA 2 NA NA 2 NA 159938 NA 4 26 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR7 18 56651343 57036606 FALSE 1259 -0.680883036815716 22 52752355 58670633 1 2 1 1 2 1 5918278 1 19 30 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR70 5 37379212 37753435 FALSE 372 -0.340603809928003 44 35904569 38931991 0.18904974046126 3 NA 0.18904974046126 3 NA 3027422 NA 16 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR72 15 53513741 53762878 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 23 3 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR73 15 84639281 84654343 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR74 11 62832342 62841809 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR75 2 189441433 189475565 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 22 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR76 15 43826963 43868419 FALSE 1020 -0.306642350771551 44 43521479 44564537 0.18904974046126 3 NA 0.18904974046126 3 NA 1043058 NA 20 16 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR77 1 111439890 111449376 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR78 1 66812885 66924887 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 17 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR81 17 1716523 1738599 FALSE 1136 -0.426581748511488 37 1616770 2058479 NA 2 NA NA 2 NA 441709 NA 14 27 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR82 3 52254421 52288020 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR83 19 12666800 12675832 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR83OS 19 12668071 12669489 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR86 7 151375909 151410727 FALSE 575 -0.189152710324709 52 151064593 151439877 0.426118104232275 3 NA 0.426118104232275 3 NA 375284 NA 15 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR87 19 37884823 37906677 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 35 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR88 19 33132090 33175795 FALSE 1327 -0.716798179971515 19 32408387 33205286 0.593443012170704 1 0 0.593443012170704 1 0 796899 1 13 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR89 14 63597039 63641861 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR90 16 649311 667833 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 41 13 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR91 7 135183839 135211534 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 16 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR92 2 68122936 68157560 FALSE 146 -0.707453054015617 21 68045962 68819335 0.328777186374237 1 0 0.328777186374237 1 0 773373 1 11 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR93 15 89690797 89743638 FALSE 1051 -0.700846279662758 25 89319345 89803222 0.276933305076759 1 0 0.276933305076759 1 0 483877 1 10 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDR97 8 144107726 144118315 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 28 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDSUB1 2 159235793 159286799 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDTC1 1 27234516 27308633 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 16 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WDYHV1 8 123416725 123470028 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WEE1 11 9573681 9593457 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WEE2 7 141708353 141731271 FALSE 567 -0.346454323038498 44 141006475 141708994 0.18904974046126 3 NA 0.18904974046126 3 NA 702519 NA 5 13 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC1 16 84294646 84329851 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC10A 20 45629526 45631196 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 2 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC10B 20 45684653 45705019 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC11 20 45648563 45670270 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC12 20 45123425 45124465 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 3 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC13 20 45702016 45708817 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC2 20 45469706 45481532 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC3 20 45747944 45791932 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 6 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC5 20 45109452 45115172 FALSE 1382 -0.240397806058622 49 45095240 45330399 0.331933131290263 3 NA 0.331933131290263 3 NA 235159 NA 10 4 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC6 20 45534196 45539495 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC8 20 45551153 45579326 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFDC9 20 45607939 45631268 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFIKKN1 16 629239 634116 FALSE 1064 -0.728523743280605 19 346264 652442 0.593443012170704 1 0 0.593443012170704 1 0 306178 1 15 7 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFIKKN2 17 50834650 50842348 FALSE 1202 -0.440749682103041 36 50696024 57879707 0.593443012170704 2 0 0.593443012170704 2 0 7183683 2 33 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WFS1 4 6269849 6303265 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WHAMM 15 82809628 82836108 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 15 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WHRN 9 114402080 114505450 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WIF1 12 65050626 65121566 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WIPF1 2 174559572 174682916 FALSE 184 -0.655118487445753 25 172735970 177212878 0.276933305076759 1 0 0.276933305076759 1 0 4476908 1 28 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WIPF2 17 40219304 40284136 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WIPF3 7 29806486 29917066 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WIPI1 17 68420948 68457513 FALSE 1220 -0.342820770896729 44 65635966 68512102 0.18904974046126 3 NA 0.18904974046126 3 NA 2876136 NA 19 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WIPI2 7 5190188 5233826 FALSE 516 -0.449782735491941 35 3301758 5481949 1 2 1 1 2 1 2180191 1 12 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WISP1 8 133191039 133231690 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 9 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WISP2 20 44714844 44728509 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WISP3 6 112054072 112070969 FALSE 481 0.96234442455973 82 111660493 112071447 0.593481580287395 8 NA 0.593481580287395 8 NA 410954 NA 3 12 4 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WIZ 19 15419980 15449951 FALSE 1311 -0.706868247396648 21 15354929 15641632 0.328777186374237 1 0 0.328777186374237 1 0 286703 1 8 17 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WLS 1 68098473 68233120 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 14 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNK1 12 752593 911452 FALSE 829 -0.407714329256422 41 409362 908739 NA 2 NA NA 2 NA 499377 NA 4 48 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNK2 9 93184916 93320572 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 49 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNK3 23 54192823 54358642 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 33 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNK4 17 42780678 42796936 FALSE 1189 -0.388368251334701 41 42730867 43039397 NA 2 NA NA 2 NA 308530 NA 19 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT1 12 48978453 48981676 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT10A 2 218880363 218899581 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT10B 12 48965340 48971763 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT11 11 76186325 76210736 FALSE 800 -0.534359574257993 31 75796365 76445038 NA 2 NA NA 2 NA 648673 NA 6 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT16 7 121325367 121341104 FALSE 558 -0.371601570030985 38 120275739 124817429 1 2 1 1 2 1 4541690 1 25 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT2 7 117275451 117323289 FALSE 557 0.3238056762542 67 116862573 120275682 0.593443012170704 4 NA 0.593443012170704 4 NA 3413109 NA 9 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT2B 1 112466541 112530165 FALSE 38 -0.534955067106541 29 109985130 114695445 1 2 1 1 2 1 4710315 1 57 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT3 17 46762506 46833154 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT3A 1 228007051 228061260 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT4 1 22117305 22143969 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT5A 3 55465715 55490539 FALSE 262 -0.660155072697345 22 52644674 62518182 1 2 1 1 2 1 9873508 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT5B 12 1529891 1647243 FALSE 831 -0.571221323114682 31 1104785 3873228 NA 2 NA NA 2 NA 2768443 NA 20 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT6 2 218859821 218874233 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT7A 3 13816258 13880121 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 7 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT7B 22 45920362 45977129 FALSE 1448 -0.957414364007962 11 44859808 46218275 0.593443012170704 1 0 0.593443012170704 1 0 1358467 1 14 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT8A 5 138083892 138092365 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT8B 10 100463041 100483744 FALSE 738 -0.604344839097233 26 98163395 102040001 0.593443012170704 2 0 0.593443012170704 2 0 3876606 2 47 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT9A 1 227918656 227947898 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 6 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WNT9B 17 46833201 46886730 FALSE 1195 -0.293823189216118 45 45397001 48530364 0.561906404904972 3 0 0.561906404904972 3 0 3133363 3 42 7 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WRAP53 17 7686071 7703502 FALSE 1144 1.92114649122348 111 7655719 7687565 0.593481580287395 16 NA 0.593481580287395 16 NA 31846 NA 3 17 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WRAP73 1 3630767 3652761 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WRB 21 39377698 39428528 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 18 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WRB-SH3BGR 21 39380332 39515506 FALSE 1406 -0.872024461574338 12 38805462 41458762 0.593443012170704 1 0 0.593443012170704 1 0 2653300 1 17 26 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WRN 8 31033801 31173769 FALSE 593 -0.569215856915978 31 30836864 31157461 NA 2 NA NA 2 NA 320597 NA 3 41 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WRNIP1 6 2765414 2786952 FALSE 425 -0.610171202268099 26 411437 13806962 0.593443012170704 2 0 0.593443012170704 2 0 13395525 2 71 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WSB1 17 27294076 27315926 FALSE 1160 -0.676205946081211 25 21703384 28361231 0.276933305076759 1 0 0.276933305076759 1 0 6657847 1 15 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WSB2 12 118032694 118062430 FALSE 920 -0.590866065663021 26 115961446 120093000 0.593443012170704 2 0 0.593443012170704 2 0 4131554 2 23 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WSCD1 17 6057807 6124427 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WSCD2 12 108129471 108250537 FALSE 910 -0.414834778706443 35 106239095 109308319 1 2 1 1 2 1 3069224 1 28 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WT1 11 32387775 32435630 TRUE 770 0.96502834644115 82 32382807 32440604 0.593481580287395 8 NA 0.593481580287395 8 NA 57797 NA 1 28 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WTAP 6 159725585 159756319 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WTIP 19 34481638 34512304 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WWC1 5 168291651 168472303 FALSE 413 -0.337019000933785 44 161850863 168669959 0.18904974046126 3 NA 0.18904974046126 3 NA 6819096 NA 12 27 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WWC2 4 183099293 183320777 FALSE 361 -0.544709500121309 29 172311654 184217738 1 2 1 1 2 1 11906084 1 30 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WWC3 23 10015562 10144478 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 26 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WWOX 16 78099413 79212667 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WWP1 8 86342738 86478420 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 28 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WWP2 16 69762306 69941741 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 23 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 WWTR1 3 149517235 149736714 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XAB2 19 7619525 7629565 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XAF1 17 6755447 6775647 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XAGE2 23 52369030 52375680 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 1 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XAGE3 23 52862525 52868068 FALSE 1481 0.620493498053204 75 52862624 53235137 0.593481580287395 6 NA 0.593481580287395 6 NA 372513 NA 8 4 1 FALSE AMP (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XAGE5 23 52812204 52818301 FALSE 1480 -0.379895296446356 41 49062124 52818208 NA 2 NA NA 2 NA 3756084 NA 52 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XBP1 22 28794555 28800597 FALSE 1427 -0.30656290382667 44 28687879 28878609 0.18904974046126 3 NA 0.18904974046126 3 NA 190730 NA 4 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XCL1 1 168576473 168582077 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XCL2 1 168540765 168543997 FALSE 69 -0.466148448061923 35 162790796 172468452 1 2 1 1 2 1 9677656 1 64 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XCR1 3 46017024 46027742 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XDH 2 31334321 31414715 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 38 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XG 23 2752048 2816500 FALSE 1452 -0.685762919812687 22 2782161 12710524 1 2 1 1 2 1 9928363 1 31 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XIAP 23 123859724 123913979 FALSE 1508 1.35760793990309 91 123860137 124094006 0.593481580287395 11 NA 0.593481580287395 11 NA 233869 NA 2 30 11 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XIRP1 3 39183210 39192596 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XIRP2 2 166888487 167259753 FALSE 181 -0.674750567823568 22 157995188 172501869 1 2 1 1 2 1 14506681 1 73 54 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XK 23 37685756 37732130 FALSE 1466 -0.839788862678505 15 37655770 38687585 0.449390955025597 1 0 0.449390955025597 1 0 1031815 1 12 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKR3 22 16783412 16821699 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKR4 8 55102389 55542054 FALSE 617 0.00128330518501094 58 54463154 55950592 0.387728048050399 4 NA 0.387728048050399 4 NA 1487438 NA 5 9 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKR5 8 6808517 6835644 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKR6 8 10896045 11201366 FALSE 584 -0.837751014905771 15 9003110 11564127 0.449390955025597 1 0 0.449390955025597 1 0 2561017 1 15 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKR7 20 31968002 32003387 FALSE 1372 -0.567663703903123 31 31757494 32331250 NA 2 NA NA 2 NA 573756 NA 13 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKR8 1 27959462 27968096 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKR9 8 70669365 70790371 FALSE 623 -0.131051519322045 50 68331230 73878897 0.512147794348469 3 0 0.512147794348469 3 0 5547667 3 20 6 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XKRX 23 100913445 100929433 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPA 9 97674909 97697357 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPC 3 14145147 14178783 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 21 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPNPEP1 10 109864766 109923553 FALSE 742 -0.566430849838351 29 102676959 110510318 1 2 1 1 2 1 7833359 1 36 24 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPNPEP2 23 129738974 129769538 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 21 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPNPEP3 22 40857077 40932815 FALSE 1442 -0.71072295834632 21 39312950 41087698 0.328777186374237 1 0 0.328777186374237 1 0 1774748 1 24 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPO1 2 61477849 61538626 FALSE 143 1.48858444092307 98 61477874 61538739 0.593481580287395 12 NA 0.593481580287395 12 NA 60865 NA 1 43 6 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPO4 13 20777329 20903048 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 24 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPO5 6 43522330 43576075 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 32 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPO6 16 28097979 28211920 FALSE 1094 -0.521932376286173 34 27403142 28925158 NA 2 NA NA 2 NA 1522016 NA 25 25 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPO7 8 21919671 22006585 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 29 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPOT 12 64404350 64451127 FALSE 895 -0.513635129341764 32 57809831 68764837 1 2 1 1 2 1 10955006 1 39 28 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XPR1 1 180632004 180890251 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRCC1 19 43543040 43580473 FALSE 1344 1.18389297309155 87 43543508 43575535 0.593481580287395 9 NA 0.593481580287395 9 NA 32027 NA 2 20 5 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRCC2 7 152644779 152676165 TRUE 579 0.958197623071595 82 152139207 152681242 0.593481580287395 8 NA 0.593481580287395 8 NA 542035 NA 2 17 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRCC3 14 103697609 103715504 FALSE 999 2.09074520197747 117 103697813 103715848 0.593481580287395 18 NA 0.593481580287395 18 NA 18035 NA 3 20 4 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRCC4 5 83077498 83353787 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRCC5 2 216107464 216206303 FALSE 214 -0.7453916048536 16 214934188 218549806 0.593443012170704 1 0 0.593443012170704 1 0 3615618 1 27 21 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRCC6 22 41621119 41664048 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRN1 3 142306607 142448062 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 44 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRN2 20 21303304 21389827 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XRRA1 11 74807739 74949200 FALSE 799 -0.333959856476233 42 72225204 75790703 0.550845998803593 3 0 0.550845998803593 3 0 3565499 3 44 26 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XXYLT1 3 195068279 195271167 FALSE 318 -0.270837389022909 45 193637285 195892500 0.561906404904972 3 0 0.561906404904972 3 0 2255215 3 16 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XYLB 3 38346760 38421348 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XYLT1 16 17101769 17470881 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 18 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 XYLT2 17 50346092 50363138 FALSE 1200 -0.220589544104765 49 49646925 50626747 0.331933131290263 3 NA 0.331933131290263 3 NA 979822 NA 25 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YAE1 7 39566376 39610320 FALSE 528 -0.454720228115064 35 30840797 41665670 1 2 1 1 2 1 10824873 1 41 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YAF2 12 42157104 42238349 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YAP1 11 102110461 102233423 FALSE 812 1.94046960871715 111 102083149 102350819 0.593481580287395 16 NA 0.593481580287395 16 NA 267670 NA 4 26 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YARS 1 32775237 32818153 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YARS2 12 32727490 32755902 FALSE 862 -0.360666714246117 40 27688303 38321205 0.593443012170704 2 0 0.593443012170704 2 0 10632902 2 29 20 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YBEY 21 46286337 46297751 FALSE 1413 -0.743046736601061 16 44627501 46664421 0.593443012170704 1 0 0.593443012170704 1 0 2036920 1 32 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YBX1 1 42682427 42702349 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YBX2 17 7288252 7294615 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 10 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YBX3 12 10699089 10723312 FALSE 845 -0.65530665813925 22 8921072 10719131 1 2 1 1 2 1 1798059 1 34 10 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YDJC 22 21628089 21630064 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 6 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YEATS2 3 183697818 183812625 FALSE 304 -0.639753265314692 28 183654029 184104851 NA 2 NA NA 2 NA 450822 NA 9 32 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YEATS4 12 69359703 69390796 FALSE 897 -0.511427456070603 34 68856545 69390172 NA 2 NA NA 2 NA 533627 NA 4 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YES1 18 721588 812546 FALSE 1243 1.76987862291714 105 721645 812421 0.593481580287395 14 NA 0.593481580287395 14 NA 90776 NA 1 24 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIF1A 11 66284580 66289170 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIF1B 19 38305104 38317273 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIPF1 1 53851719 53889834 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIPF2 19 10922185 10928681 FALSE 1298 -0.649712867088161 25 10544276 10960884 0.276933305076759 1 0 0.276933305076759 1 0 416608 1 14 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIPF3 6 43511827 43516990 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIPF4 2 32277910 32316594 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 6 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIPF5 5 144158159 144170714 FALSE 402 -0.538128404852922 29 142875200 149379219 1 2 1 1 2 1 6504019 1 38 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIPF6 23 68498323 68537285 FALSE 1491 -0.29734856588081 45 68048387 71118549 0.561906404904972 3 0 0.561906404904972 3 0 3070162 3 26 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YIPF7 4 44622065 44678556 FALSE 334 -0.607359237815424 28 41749609 47653578 NA 2 NA NA 2 NA 5903969 NA 19 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YJEFN3 19 19528861 19537581 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YJU2 19 4247079 4269090 FALSE 1281 -0.634435353829816 27 4175147 5151546 1 2 1 1 2 1 976399 1 27 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YKT6 7 44200968 44214294 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YLPM1 14 74763366 74859435 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 39 2 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YME1L1 10 27110112 27155266 FALSE 712 -1.04174627008432 9 27112127 27161086 0.593443012170704 1 0 0.593443012170704 1 0 48959 1 2 20 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YOD1 1 207043849 207052980 FALSE 91 -0.426108986437787 35 206799051 225999266 1 2 1 1 2 1 19200215 1 107 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YPEL1 22 21697544 21735834 FALSE 1418 -0.659801218769688 25 20999992 21759747 0.276933305076759 1 0 0.276933305076759 1 0 759755 1 16 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YPEL2 17 59331689 59401729 FALSE 1205 -0.252645660498847 47 58422417 59890830 0.593443012170704 3 1 0.593443012170704 3 1 1468413 2 20 4 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YPEL3 16 30092314 30096915 FALSE 1097 -0.35795803960906 41 29983087 30113522 NA 2 NA NA 2 NA 130435 NA 12 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YPEL4 11 57645087 57649944 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YPEL5 2 30146941 30160533 FALSE 126 -0.171203969699343 51 29232333 33595460 0.593443012170704 3 0 0.593443012170704 3 0 4363127 3 21 2 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YRDC 1 37802944 37808185 FALSE 14 -0.573849257650183 29 37723397 39896789 1 2 1 1 2 1 2173392 1 28 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YTHDC1 4 68310387 68350089 FALSE 342 -0.562630497310063 29 67472566 80201360 1 2 1 1 2 1 12728794 1 106 18 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YTHDC2 5 113513683 113595285 FALSE 390 -0.47212161206796 35 112861363 122075522 1 2 1 1 2 1 9214159 1 31 30 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YTHDF1 20 63195429 63216234 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YTHDF2 1 28736621 28769775 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YTHDF3 8 63168553 63212786 FALSE 619 -0.291100473886065 45 56069764 67271740 0.561906404904972 3 0 0.561906404904972 3 0 11201976 3 45 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YWHAB 20 44885676 44908532 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YWHAE 17 1344272 1400378 FALSE 1134 1.90774868181826 111 1345554 1354319 0.593481580287395 16 NA 0.593481580287395 16 NA 8765 NA 1 24 4 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YWHAG 7 76326794 76359031 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YWHAH 22 31944461 31957603 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YWHAQ 2 9583972 9631014 FALSE 110 -0.636432628793072 26 6840588 12723472 0.593443012170704 2 0 0.593443012170704 2 0 5882884 2 32 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YWHAZ 8 100916525 100953388 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YY1 14 100238298 100282792 FALSE 993 -0.50796871578801 32 96039535 101975725 1 2 1 1 2 1 5936190 1 30 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YY1AP1 1 155659443 155689000 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 16 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 YY2 23 21855987 21858727 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 Z82190.2 22 31754899 31956243 FALSE 1434 -0.723290364261038 19 30468830 36877853 0.593443012170704 1 0 0.593443012170704 1 0 6409023 1 59 50 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 Z83844.1 22 37686414 37726503 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 24 4 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 Z83844.3 22 37639693 37666932 FALSE 1437 -0.794246729094507 18 37226677 37725145 0.387809979850725 1 0 0.387809979850725 1 0 498468 1 15 25 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 Z84488.2 6 116399395 116463696 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 Z84492.1 3 50350892 50367923 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 22 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 Z98752.3 20 43540171 43569498 FALSE 1381 -0.555298351937096 31 43033996 45094914 NA 2 NA NA 2 NA 2060918 NA 27 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZACN 17 76071961 76083666 FALSE 1231 -0.188025902722153 52 75784911 76287841 0.426118104232275 3 NA 0.426118104232275 3 NA 502930 NA 22 15 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZADH2 18 75195108 75209348 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZAN 7 100733626 100797797 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 53 9 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZAP70 2 97713560 97739862 FALSE 156 0.974489586045585 82 97713807 97739868 0.593481580287395 8 NA 0.593481580287395 8 NA 26061 NA 1 18 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZAR1 4 48490252 48494389 FALSE 335 -0.769982134443895 18 47661719 51899255 0.387809979850725 1 0 0.387809979850725 1 0 4237536 1 14 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZAR1L 13 32303700 32315344 FALSE 941 -0.821167160033744 14 28659212 32311829 0.593443012170704 1 0 0.593443012170704 1 0 3652617 1 17 8 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBBX 3 167240287 167381346 FALSE 295 -0.459354232909137 35 156829355 175803206 1 2 1 1 2 1 18973851 1 66 21 7 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED2 3 111592900 111595443 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED3 5 77072072 77087323 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 3 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED4 22 49853842 49890078 FALSE 1450 -0.763611751958226 17 46262822 50170750 0.593443012170704 1 0 0.593443012170704 1 0 3907928 1 19 14 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED5 11 10812074 10858796 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED6 1 203795714 203854999 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED6CL 7 150329789 150332721 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 3 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED8 5 160393148 160400097 FALSE 411 -0.210270107950993 52 157651371 161546572 0.426118104232275 3 NA 0.426118104232275 3 NA 3895201 NA 20 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBED9 6 28570535 28616212 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 17 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBP1 20 57603846 57620576 FALSE 1394 -0.583097484022477 26 53945039 58715308 0.593443012170704 2 0 0.593443012170704 2 0 4770269 2 32 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB1 14 64503712 64533690 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB10 8 80485619 80526265 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB11 3 101648889 101677495 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 19 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB12 6 31899607 31901992 FALSE 446 -0.600253917659637 26 31498185 32192747 0.593443012170704 2 0 0.593443012170704 2 0 694562 2 68 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB14 18 5289019 5297053 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB16 11 114059593 114250676 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB17 1 15941869 15976132 FALSE 8 -0.640299117551469 26 15941963 16409171 0.593443012170704 2 0 0.593443012170704 2 0 467208 2 12 17 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB18 1 244048939 244057476 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB2 6 151364117 151391548 FALSE 505 0.194693094382294 63 151349031 151391473 0.54220702508464 4 NA 0.54220702508464 4 NA 42442 NA 2 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB20 3 114314501 115147271 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB21 21 41986831 42010387 FALSE 1409 -0.790191581737567 16 41741717 44077666 0.593443012170704 1 0 0.593443012170704 1 0 2335949 1 29 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB22 6 33314406 33317942 FALSE 458 1.64454209701499 100 33313684 33321863 0.593481580287395 13 NA 0.593481580287395 13 NA 8179 NA 4 8 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB24 6 109462594 109483237 FALSE 480 -0.604063032674256 26 106186549 111601249 0.593443012170704 2 0 0.593443012170704 2 0 5414700 2 40 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB25 14 64449106 64505213 FALSE 979 -0.361206744196977 38 45204117 65044434 1 2 1 1 2 1 19840317 1 117 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB26 9 122915566 122931500 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB3 11 62748319 62754188 FALSE 784 -0.404056986959981 40 62534072 63143785 0.593443012170704 2 0 0.593443012170704 2 0 609713 2 37 8 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB32 19 35704527 35717038 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 9 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB33 23 120250752 120258398 FALSE 1507 -0.42494528836736 37 119592437 123733038 NA 2 NA NA 2 NA 4140601 NA 36 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB34 9 126860665 126885878 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB37 1 173868082 173903549 FALSE 70 -0.432033808773885 37 172532503 177941936 NA 2 NA NA 2 NA 5409433 NA 27 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB38 3 141324213 141449792 FALSE 291 -0.5812874352757 31 139348322 142447987 NA 2 NA NA 2 NA 3099665 NA 19 14 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB39 12 56998834 57006446 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB4 17 7459366 7484263 FALSE 1143 -0.633574116488845 28 7324434 7654644 NA 2 NA NA 2 NA 330210 NA 31 19 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB40 1 22428838 22531157 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 22 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB41 1 197153680 197200542 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB42 14 104800596 104804712 FALSE 1001 2.03313239463349 113 104769467 104802208 0.593481580287395 18 NA 0.593481580287395 18 NA 32741 NA 2 5 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB43 9 126805006 126838210 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB44 11 130226677 130314908 FALSE 823 -0.109064082046269 53 128842359 132146502 0.593443012170704 3 1 0.593443012170704 3 1 3304143 2 16 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB45 19 58513530 58538911 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB46 20 63743666 63831244 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 9 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB47 3 42653684 42665854 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB48 1 6580001 6589280 FALSE 1 -0.767307151706182 16 925941 9723347 0.593443012170704 1 0 0.593443012170704 1 0 8797406 1 116 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB49 4 4290251 4321786 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB5 9 37438114 37465399 FALSE 667 0.255877631246137 64 36843439 37441653 0.593443012170704 4 NA 0.593443012170704 4 NA 598214 NA 4 8 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB6 9 122908056 122913330 FALSE 690 -0.814794626328837 15 122820615 125143471 0.449390955025597 1 0 0.449390955025597 1 0 2322856 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB7A 19 4044364 4066945 FALSE 1279 1.30792485391138 90 4043571 4124130 0.593481580287395 10 NA 0.593481580287395 10 NA 80559 NA 2 23 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB7B 1 155002630 155018522 FALSE 60 -0.3237010172629 42 152664166 155880480 0.550845998803593 3 0 0.550845998803593 3 0 3216314 3 116 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB7C 18 48026673 48410752 FALSE 1257 -0.700877165683296 25 48029458 50984359 0.276933305076759 1 0 0.276933305076759 1 0 2954901 1 20 11 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB8A 1 32539427 32605939 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB8B 1 32465069 32496686 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB8OS 1 32600172 32650903 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZBTB9 6 33453970 33457548 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC2HC1A 8 78666047 78719765 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC2HC1B 6 143864436 143938356 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC2HC1C 14 75064170 75079987 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H10 12 56118159 56127514 FALSE 886 -0.537338118152197 31 56104745 57078662 NA 2 NA NA 2 NA 973917 NA 40 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H11A 1 203795654 203854999 FALSE 83 -0.474169116011884 35 202123171 204409929 1 2 1 1 2 1 2286758 1 35 30 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H12A 1 37474552 37484379 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H12B 23 65366638 65507887 FALSE 1487 -0.50792792543453 34 64268792 66605144 NA 2 NA NA 2 NA 2336352 NA 8 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H12C 11 110093361 110171841 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H12D 6 149446795 149485061 FALSE 500 -0.617048593121682 27 143060927 149638577 1 2 1 1 2 1 6577650 1 29 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H13 13 45954465 46052759 FALSE 945 -0.852277475383906 14 40729381 48261263 0.593443012170704 1 0 0.593443012170704 1 0 7531882 1 45 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H14 14 88562909 88627596 FALSE 989 -0.464446295348864 35 81180242 94769873 1 2 1 1 2 1 13589631 1 67 30 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H15 2 186486156 186509363 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H18 16 88570381 88631966 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 22 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H3 8 143437655 143541453 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 18 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H4 19 47064187 47113752 FALSE 1351 -0.803313559004103 18 47021105 47209252 0.387809979850725 1 0 0.387809979850725 1 0 188147 1 4 23 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H6 2 112275594 112340063 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 20 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H7A 16 11750586 11797267 FALSE 1087 -0.490765864307376 37 10941799 13213272 NA 2 NA NA 2 NA 2271473 NA 21 24 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H7B 22 41301522 41360147 FALSE 1444 -0.667534948165276 22 41205371 42087085 1 2 1 1 2 1 881714 1 27 28 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3H8 2 112211525 112255136 FALSE 168 -0.635356573637396 26 112055586 113201411 0.593443012170704 2 0 0.593443012170704 2 0 1145825 2 21 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3HAV1 7 139043520 139109719 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 19 2 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3HAV1L 7 139025706 139036029 FALSE 565 -0.317715392915884 42 131509059 140704846 0.550845998803593 3 0 0.550845998803593 3 0 9195787 3 52 7 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC3HC1 7 130018286 130051451 FALSE 562 -0.317665698882144 44 129225080 130734035 0.18904974046126 3 NA 0.18904974046126 3 NA 1508955 NA 18 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZC4H2 23 64915802 65034713 FALSE 1487 -0.50792792543453 34 64268792 66605144 NA 2 NA NA 2 NA 2336352 NA 8 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC10 5 132996985 133026604 FALSE 396 -0.390966775658419 38 132659491 138567707 1 2 1 1 2 1 5908216 1 64 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC12 23 118823790 118826968 FALSE 1505 -0.319015765237659 44 111246723 119468466 0.18904974046126 3 NA 0.18904974046126 3 NA 8221743 NA 29 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC13 23 74304190 74305031 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 3 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC14 16 87406246 87492045 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 19 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC17 1 31296982 31364953 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC18 23 104112131 104115846 FALSE 1500 -0.294850148786605 46 103676819 108191452 0.261157737158964 3 NA 0.261157737158964 3 NA 4514633 NA 36 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC2 18 62523007 62587709 FALSE 1263 -0.646518978860434 22 61490571 62978355 1 2 1 1 2 1 1487784 1 7 22 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC24 10 79382325 79445627 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 4 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC3 20 296968 300321 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC4 4 25312785 25370383 FALSE 330 -0.690629118933132 22 20704521 38659289 1 2 1 1 2 1 17954768 1 29 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC7 9 37120539 37358149 FALSE 667 0.255877631246137 64 36843439 37441653 0.593443012170704 4 NA 0.593443012170704 4 NA 598214 NA 4 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC8 12 122471600 122501073 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCCHC9 5 81301590 81313297 FALSE 386 -0.526997465361444 34 80960729 86619519 NA 2 NA NA 2 NA 5658790 NA 14 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCRB1 12 42312078 42326118 FALSE 867 -0.749810542706401 18 42105912 45439972 0.387809979850725 1 0 0.387809979850725 1 0 3334060 1 13 7 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCWPW1 7 100400826 100428992 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 18 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZCWPW2 3 28349146 28538122 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDBF2 2 206274663 206314438 FALSE 207 -0.687860115700969 25 203956702 208231311 0.276933305076759 1 0 0.276933305076759 1 0 4274609 1 25 30 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC1 16 67394152 67416833 FALSE 1111 -0.372758081804933 41 67110204 67545826 NA 2 NA NA 2 NA 435622 NA 24 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC11 5 795606 850986 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 12 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC11B 5 710360 766952 FALSE 367 -0.714818597929336 19 271810 871566 0.593443012170704 1 0 0.593443012170704 1 0 599756 1 9 11 5 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC12 9 128720869 128724127 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC13 11 19117099 19176422 FALSE 767 -0.65780554306872 22 17779490 22377702 1 2 1 1 2 1 4598212 1 35 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC14 6 157381133 157678146 FALSE 510 -0.599798817171202 26 157292938 160752090 0.593443012170704 2 0 0.593443012170704 2 0 3459152 2 27 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC15 23 75368427 75523502 FALSE 1495 -0.146451704559809 52 71529726 77456497 0.426118104232275 3 NA 0.426118104232275 3 NA 5926771 NA 38 11 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC16 10 97446131 97457370 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC17 12 76763588 76853696 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 17 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC18 1 26826710 26857602 FALSE 12 -0.637895248603134 26 26787219 31741980 0.593443012170704 2 0 0.593443012170704 2 0 4954761 2 62 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC19 3 196197449 196211437 FALSE 320 -0.331384319178076 44 196198347 197512245 0.18904974046126 3 NA 0.18904974046126 3 NA 1313898 NA 23 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC2 8 17156029 17224799 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC20 13 21372573 21459370 FALSE 934 -0.998766566201071 11 21140591 21604174 0.593443012170704 1 0 0.593443012170704 1 0 463583 1 5 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC21 9 14611071 14693471 FALSE 653 -0.880856285414118 12 12695725 19619587 0.593443012170704 1 0 0.593443012170704 1 0 6923862 1 24 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC22 14 77131270 77142734 FALSE 987 -0.475230512723761 35 75053455 80916497 1 2 1 1 2 1 5863042 1 40 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC23 3 113947901 113965401 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC24 11 66520637 66546238 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC3 3 44915257 44976185 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC4 7 6577434 6589374 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC5 11 57667747 57701187 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC6 10 112424428 112446917 FALSE 744 -0.571261406572123 31 110823541 112669007 NA 2 NA NA 2 NA 1845466 NA 10 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC7 16 84974181 85011535 FALSE 1123 -0.554783232547378 29 84000705 85806889 1 2 1 1 2 1 1806184 1 23 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC8 22 20129456 20148007 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZDHHC9 23 129803288 129843909 FALSE 1512 -0.381745201244187 41 124380507 129920771 NA 2 NA NA 2 NA 5540264 NA 14 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZEB1 10 31318495 31529814 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZEB2 2 144364364 144524583 FALSE 178 1.72588068954441 103 144389694 144517331 0.593481580287395 14 NA 0.593481580287395 14 NA 127637 NA 1 19 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZER1 9 128729786 128772414 FALSE 694 -0.419978360361374 37 127803038 129829230 NA 2 NA NA 2 NA 2026192 NA 54 17 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAND1 8 81701334 81732903 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAND2A 7 1152071 1160759 FALSE 514 -0.400251782549998 38 193171 2844144 1 2 1 1 2 1 2650973 1 34 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAND2B 2 219195237 219209651 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAND3 6 37819499 38154624 FALSE 464 -0.643077716616848 27 37212955 41687757 1 2 1 1 2 1 4474802 1 33 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAND4 10 45615501 45672780 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAND5 9 72351425 72365235 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAND6 15 80059568 80138393 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFAT 8 134477788 134713049 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 24 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFC3H1 12 71609472 71667725 FALSE 901 -0.607423957424189 26 71610425 82354474 0.593443012170704 2 0 0.593443012170704 2 0 10744049 2 34 42 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFHX2 14 23520855 23556192 FALSE 970 -0.412851735983493 35 23322181 35317236 1 2 1 1 2 1 11995055 1 90 34 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFHX3 16 72782885 73891871 TRUE 1116 1.667786015374 102 72783092 73093539 0.593481580287395 13 NA 0.593481580287395 13 NA 310447 NA 1 81 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFHX4 8 76681219 76867285 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 46 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP1 16 75148492 75172236 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP14 19 36334453 36379199 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP2 5 178895894 178933212 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP28 19 56538948 56556810 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 15 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP3 17 5078248 5096374 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP30 19 37613749 37692337 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP36 19 39406813 39409412 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP36L1 14 68787660 68796253 FALSE 982 1.17049758939013 85 67835180 68877079 0.593481580287395 9 NA 0.593481580287395 9 NA 1041899 NA 3 6 1 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP36L2 2 43222402 43226609 FALSE 132 -0.617854260121662 27 42335681 46007516 1 2 1 1 2 1 3671835 1 22 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP37 9 113038380 113056759 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP41 8 143246821 143262705 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 3 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP42 4 187995771 188005050 FALSE 365 -0.695790337132022 25 188002815 190026761 0.276933305076759 1 0 0.276933305076759 1 0 2023946 1 5 4 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP57 6 29672392 29681110 FALSE 436 -0.576823184926667 31 29044290 29676881 NA 2 NA NA 2 NA 632591 NA 19 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP62 5 180847611 180861285 FALSE 423 -0.261525181026192 49 180739698 181260803 0.331933131290263 3 NA 0.331933131290263 3 NA 521105 NA 12 11 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP64 20 52051663 52204308 FALSE 1392 -0.394988113570411 41 50587290 53253559 NA 2 NA NA 2 NA 2666269 NA 12 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP69 1 40477215 40496343 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP69B 1 40450102 40463718 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP82 19 36383120 36418656 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP90 16 68530090 68576072 FALSE 1113 -0.361578061499389 41 67645262 68685216 NA 2 NA NA 2 NA 1039954 NA 33 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP91 11 58579111 58621042 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 14 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP91-CNTF 11 58579172 58624639 FALSE 778 -0.354874402734943 39 56275855 59576830 1 2 1 1 2 1 3300975 1 77 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFP92 23 153418322 153426481 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFPL1 11 65084210 65088400 FALSE 790 -0.514989301613682 34 64813788 65107571 NA 2 NA NA 2 NA 293783 NA 16 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFPM1 16 88453317 88537016 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 18 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFPM2 8 104590733 105804532 FALSE 632 0.0133668854987098 57 102652383 116770311 0.397594064138395 4 0 0.397594064138395 4 0 14117928 4 32 17 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFR 5 32354350 32444761 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFR2 19 3804024 3869032 FALSE 1277 -0.579847501452547 29 3151723 3942052 1 2 1 1 2 1 790329 1 24 26 6 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFX 23 24149173 24216255 FALSE 1458 -0.431477296520648 37 20155397 24172797 NA 2 NA NA 2 NA 4017400 NA 19 13 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE1 14 72969451 73027212 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE16 5 80408013 80479350 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 27 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE19 15 40807086 40815084 FALSE 1012 -0.552393881997511 31 40736521 40955683 NA 2 NA NA 2 NA 219162 NA 11 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE21 14 103715730 103733668 FALSE 999 2.09074520197747 117 103697813 103715848 0.593481580287395 18 NA 0.593481580287395 18 NA 18035 NA 3 8 1 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE26 14 67727374 67816590 FALSE 981 -0.415543299339902 37 65629633 67825438 NA 2 NA NA 2 NA 2195805 NA 18 53 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE27 10 97737121 97760907 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 12 3 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE28 4 2269582 2418663 FALSE 326 -0.697910858685582 25 1983477 2331072 0.276933305076759 1 0 0.276933305076759 1 0 347595 1 7 20 3 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZFYVE9 1 52142094 52346686 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 25 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZG16 16 29778240 29782973 FALSE 1096 -0.602465674094919 28 28951051 29982946 NA 2 NA NA 2 NA 1031895 NA 27 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZG16B 16 2830169 2839585 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZGLP1 19 10304803 10309880 FALSE 1296 -0.612552856750404 28 10252230 10467507 NA 2 NA NA 2 NA 215277 NA 13 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZGPAT 20 63707465 63736142 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZGRF1 4 112539333 112636995 FALSE 351 -0.666189393661005 22 110004608 121835234 1 2 1 1 2 1 11830626 1 38 41 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZHX1 8 123248451 123275541 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZHX1-C8orf76 8 123226189 123274284 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZHX2 8 122781394 122974512 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 10 2 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZHX3 20 41178448 41317672 FALSE 1377 -0.20689448519252 52 38643871 41423639 0.426118104232275 3 NA 0.426118104232275 3 NA 2779768 NA 13 12 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIC1 3 147393422 147510293 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIC2 13 99981772 99986773 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIC3 23 137566142 137577691 FALSE 1519 0.0708401583431336 60 136780801 138711057 0.593443012170704 3 NA 0.593443012170704 3 NA 1930256 NA 5 7 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIC4 3 147386046 147406860 FALSE 293 -0.504552078144409 32 142664334 156555095 1 2 1 1 2 1 13890761 1 64 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIC5 13 99962964 99971909 FALSE 951 -0.821941228771545 14 91756251 101706870 0.593443012170704 1 0 0.593443012170704 1 0 9950619 1 33 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIK1 19 57578456 57593777 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIM2 19 56774547 56840729 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 30 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZIM3 19 57134096 57145202 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZKSCAN1 7 100015572 100041689 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZKSCAN2 16 25236001 25257931 FALSE 1092 -0.454888172155647 37 23642926 27330027 NA 2 NA NA 2 NA 3687101 NA 17 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZKSCAN3 6 28349914 28369177 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZKSCAN4 6 28244623 28252224 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZKSCAN5 7 99504651 99534700 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZKSCAN7 3 44555193 44594173 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZKSCAN8 6 28141910 28159472 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMAT1 23 101882288 101932031 FALSE 1499 0.0561811093468799 60 101391426 103676527 0.593443012170704 3 NA 0.593443012170704 3 NA 2285101 NA 39 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMAT2 5 140698680 140706676 FALSE 398 -0.55648328591549 31 138951780 140786313 NA 2 NA NA 2 NA 1834533 NA 38 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMAT3 3 179017223 179072279 FALSE 296 1.11990635751143 84 177025548 179245109 0.593481580287395 9 NA 0.593481580287395 9 NA 2219561 NA 6 6 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMAT4 8 40530590 40897833 FALSE 609 -0.82053207582264 14 38512632 41896306 0.593443012170704 1 0 0.593443012170704 1 0 3383674 1 19 6 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMAT5 22 29730956 29767011 FALSE 1433 -0.677278071581628 24 29720502 30468705 0.455382288152033 1 0 0.455382288152033 1 0 748203 1 18 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMIZ1 10 79069035 79316528 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 27 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMIZ2 7 44748581 44769881 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 22 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMPSTE24 1 40258107 40294184 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYM1 1 35032172 35115859 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 18 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYM2 13 19958670 20091829 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 29 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYM3 23 71239624 71255146 FALSE 1492 1.41079831549961 93 71118808 71254970 0.593481580287395 11 NA 0.593481580287395 11 NA 136162 NA 4 38 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYM4 1 35268967 35422058 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 33 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYM5 13 19823482 19863636 FALSE 932 -0.820219108998638 15 19173898 20902728 0.449390955025597 1 0 0.449390955025597 1 0 1728830 1 14 12 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYM6 1 34986165 35031968 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 23 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYND10 3 50341110 50346852 FALSE 258 -0.602553554052266 28 49910687 52399683 NA 2 NA NA 2 NA 2488996 NA 58 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYND11 10 134465 254637 FALSE 708 -0.631431297916999 26 47140 8014646 0.593443012170704 2 0 0.593443012170704 2 0 7967506 2 40 17 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYND12 1 42430329 42456267 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYND15 17 4740015 4746119 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 15 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYND19 9 137582079 137590490 FALSE 707 -0.450560652359708 35 136673721 138221151 1 2 1 1 2 1 1547430 1 64 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZMYND8 20 47209214 47356889 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 29 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF10 12 133130575 133159465 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF100 19 21722766 21767628 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF101 19 19668796 19683509 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF106 15 42412823 42491141 FALSE 1016 -0.560024061778574 30 41775227 42684311 0.398146319473827 2 0 0.398146319473827 2 0 909084 2 20 36 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF107 7 64666083 64711582 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF112 19 44326555 44367217 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 15 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF114 19 48270102 48287608 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF117 7 64971776 65006684 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF12 7 6688433 6706923 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF121 19 9560353 9584533 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF124 1 247121975 247172016 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF131 5 43065176 43192021 FALSE 374 -0.309815356871459 43 39107363 43704363 0.593443012170704 2 0 0.593443012170704 2 0 4597000 2 27 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF132 19 58432814 58440222 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF133 20 18288283 18316996 FALSE 1368 -0.544934055911297 29 10050175 21389324 1 2 1 1 2 1 11339149 1 47 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF134 19 57614233 57624723 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF135 19 58059239 58086310 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF136 19 12163064 12189881 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF138 7 64794388 64833681 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF14 19 19710471 19733097 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF140 12 133079838 133107544 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF141 4 337814 384864 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF142 2 218637916 218659655 FALSE 215 -0.563227761108651 31 218553626 219251579 NA 2 NA NA 2 NA 697953 NA 30 21 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF143 11 9460319 9528524 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF146 19 36214602 36238774 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF148 3 125225561 125375354 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 14 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF154 19 57697367 57709194 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF155 19 43967862 43998325 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF157 23 47370583 47414305 FALSE 1474 -0.325556439763856 44 47199062 47467488 0.18904974046126 3 NA 0.18904974046126 3 NA 268426 NA 5 8 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF16 8 144930358 144950888 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 9 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF160 19 53066606 53103436 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 10 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF165 6 28080975 28089563 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF169 9 94259311 94301454 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 9 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF17 19 57411163 57421939 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF174 16 3401235 3409370 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 8 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF175 19 51571298 51592508 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 11 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF177 19 9363020 9382617 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF18 17 11977439 11997510 FALSE 1149 -0.757646015247177 16 8228137 11992462 0.593443012170704 1 0 0.593443012170704 1 0 3764325 1 40 10 0 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF180 19 44474428 44500524 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF181 19 34734155 34745378 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF182 23 47974851 48003978 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 10 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF184 6 27450743 27473118 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF185 23 152914442 152973480 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 24 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF189 9 101398873 101410660 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF19 16 71464555 71565089 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF195 11 3339261 3379222 FALSE 760 -0.747968815556987 16 2159883 5900992 0.593443012170704 1 0 0.593443012170704 1 0 3741109 1 97 10 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF197 3 44584888 44648471 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 21 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF2 2 95165432 95184317 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF20 19 12092843 12140407 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 16 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF200 16 3222325 3236221 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF202 11 123724177 123741675 FALSE 819 -0.347880347699126 42 119312866 125624547 0.550845998803593 3 0 0.550845998803593 3 0 6311681 3 72 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF205 16 3112560 3120517 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF207 17 32350117 32381886 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF208 19 21932958 22010949 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF211 19 57630395 57642779 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF212 7 149239651 149255609 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 9 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF213 16 3129777 3142805 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF214 11 6999318 7020368 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF215 11 6926404 7001004 FALSE 763 -0.610979916628165 26 6921922 14265518 0.593443012170704 2 0 0.593443012170704 2 0 7343596 2 58 13 2 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF217 20 53567065 53609907 FALSE 1393 1.68892244899651 102 53253819 53583025 0.593481580287395 14 NA 0.593481580287395 14 NA 329206 NA 2 24 1 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF219 14 21090046 21104722 FALSE 966 -0.527182958429236 32 20368516 21462437 1 2 1 1 2 1 1093921 1 37 17 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF22 10 45000475 45005326 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF221 19 43951223 43967709 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF222 19 44025342 44033112 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF223 19 44051367 44067991 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF224 19 44094339 44109886 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF225 19 44112181 44134816 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF226 19 44165073 44178381 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF227 19 44207547 44237268 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 11 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF229 19 44417519 44448578 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF23 16 71447597 71463095 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF230 19 44002948 44013926 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF232 17 5105541 5123116 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF233 19 44259880 44275317 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF234 19 44141557 44160309 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF235 19 44228729 44305046 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF236 18 76822607 76970727 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 36 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF239 10 43556344 43574618 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF24 18 35332212 35345482 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF248 10 37776526 37858106 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF25 10 37949572 37976633 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF250 8 144876497 144902168 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 10 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF251 8 144720907 144756417 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 10 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF253 19 19865886 19894674 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF254 19 24033405 24129961 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF256 19 57940833 57947675 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF257 19 22052452 22091480 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF26 12 132986365 133032952 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF260 19 36510695 36528660 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF263 16 3263800 3301401 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 18 0 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF264 19 57191500 57222846 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF266 19 9412461 9435578 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF267 16 31873758 31917357 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF268 12 133181409 133214831 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 15 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF273 7 64870172 64930966 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF274 19 58183029 58213562 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF275 23 153334147 153360110 FALSE 1524 0.0584016068528447 59 151923748 154515783 0.593443012170704 3 1 0.593443012170704 3 1 2592035 2 68 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF276 16 89720400 89740903 FALSE 1128 -0.7874836221635 18 89508629 89733951 0.387809979850725 1 0 0.387809979850725 1 0 225322 1 10 24 4 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF277 7 112206588 112343096 FALSE 555 0.0178203146786146 57 107070296 116499818 0.397594064138395 4 0 0.397594064138395 4 0 9429522 4 32 15 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF28 19 52797409 52857600 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 10 2 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF280A 22 22513736 22520270 FALSE 1420 -0.805714594408242 15 21773018 22556827 0.449390955025597 1 0 0.449390955025597 1 0 783809 1 7 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF280B 22 22484421 22509154 FALSE 1420 -0.805714594408242 15 21773018 22556827 0.449390955025597 1 0 0.449390955025597 1 0 783809 1 7 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF280C 23 130202711 130268899 FALSE 1514 -0.184741968310427 52 130066902 134368402 0.426118104232275 3 NA 0.426118104232275 3 NA 4301500 NA 21 20 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF280D 15 56630181 56734086 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 24 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF281 1 200404940 200410056 FALSE 79 -0.370291925769589 38 196228313 201213541 1 2 1 1 2 1 4985228 1 29 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF282 7 149195485 149226248 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 12 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF283 19 43827292 43852017 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 6 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF284 19 44072144 44089613 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF285 19 44382298 44401608 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF286A 17 15699577 15720787 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 10 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF286B 17 18658429 18682262 FALSE 1159 -0.661173070578315 24 18494189 21551369 0.455382288152033 1 0 0.455382288152033 1 0 3057180 1 33 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF287 17 16551387 16569206 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF292 6 87152833 87264196 FALSE 473 1.6409798023245 100 87152458 87284801 0.593481580287395 13 NA 0.593481580287395 13 NA 132343 NA 2 49 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF296 19 45071500 45076588 FALSE 1346 -0.537447973627732 31 45071790 45351105 NA 2 NA NA 2 NA 279315 NA 12 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF3 7 100064033 100082548 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF30 19 34926903 34945170 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 9 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF300 5 150894392 150904983 FALSE 408 -0.467141502250164 36 150444289 157057897 0.593443012170704 2 0 0.593443012170704 2 0 6613608 2 39 12 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF302 19 34677639 34686397 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF304 19 57351307 57359898 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF311 6 28994785 29005316 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF316 7 6637322 6656432 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF317 19 9140380 9163424 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF318 6 43307134 43369478 FALSE 468 -0.535049925756653 29 42050564 43687780 1 2 1 1 2 1 1637216 1 44 35 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF319 16 57994668 58000453 FALSE 1107 -0.361323883538175 38 56865256 61654049 1 2 1 1 2 1 4788793 1 40 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF32 10 43643859 43648856 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF320 19 52863790 52897693 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 9 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF322 6 26634383 26659752 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 5 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF324 19 58467045 58475436 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF324B 19 58451604 58457833 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF326 1 89995112 90035531 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 14 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF329 19 58126252 58155110 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF330 4 141220887 141234697 FALSE 354 -0.632110847687822 27 122912590 141732750 1 2 1 1 2 1 18820160 1 38 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF331 19 53519527 53580269 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF333 19 14689801 14733746 FALSE 1307 -0.634711318226917 28 14562622 15157754 NA 2 NA NA 2 NA 595132 NA 17 16 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF334 20 46499630 46513559 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF335 20 45948653 45972172 FALSE 1387 -0.453996784805856 37 45896986 47625367 NA 2 NA NA 2 NA 1728381 NA 19 32 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF337 20 25674215 25696841 FALSE 1370 -0.631240057372694 28 23365630 31644791 NA 2 NA NA 2 NA 8279161 NA 37 11 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF33A 10 38010650 38065088 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF33B 10 42574185 42638568 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF34 8 144773114 144787345 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 10 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF341 20 33731657 33792269 FALSE 1374 -0.408416385631666 38 32836709 37301244 1 2 1 1 2 1 4464535 1 76 20 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF343 20 2481817 2524702 FALSE 1362 -0.499835834712842 32 87705 2663761 1 2 1 1 2 1 2576056 1 47 11 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF345 19 36850361 36913029 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF346 5 177022696 177081189 FALSE 416 -0.466684199486458 35 171420218 177079450 1 2 1 1 2 1 5659232 1 45 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF347 19 53124072 53159075 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF35 3 44648727 44660791 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF350 19 51964343 51986856 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 9 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF354A 5 178711592 178730702 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF354B 5 178859953 178888122 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF354C 5 179060415 179083537 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF358 19 7515292 7521026 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF362 1 33256545 33300719 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 10 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF365 10 62374192 62670301 FALSE 723 -0.681537891632605 25 62198471 68527305 0.276933305076759 1 0 0.276933305076759 1 0 6328834 1 20 15 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF366 5 72442652 72507727 FALSE 384 -0.525013445351136 32 69094267 80654060 1 2 1 1 2 1 11559793 1 80 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF367 9 96385941 96418329 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF37A 10 38094334 38150293 FALSE 716 -0.624638501310173 27 32056417 43090154 1 2 1 1 2 1 11033737 1 21 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF382 19 36604817 36634113 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF383 19 37217926 37248738 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF384 12 6666477 6689572 FALSE 838 -0.289730061758959 46 6620232 6944704 0.261157737158964 3 NA 0.261157737158964 3 NA 324472 NA 21 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF385A 12 54369133 54391298 FALSE 882 -0.467888725993008 35 53187557 55966010 1 2 1 1 2 1 2778453 1 78 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF385B 2 179441982 179861505 FALSE 191 -0.789559166320211 18 178752075 181062791 0.387809979850725 1 0 0.387809979850725 1 0 2310716 1 6 13 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF385C 17 42025576 42098479 FALSE 1185 -0.458911425989672 37 41466115 42193573 NA 2 NA NA 2 NA 727458 NA 34 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF385D 3 21412222 22373321 FALSE 240 -0.687509657646417 22 12734710 30003970 1 2 1 1 2 1 17269260 1 63 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF391 6 27374615 27403904 FALSE 433 -0.663780018909945 22 26365358 27472317 1 2 1 1 2 1 1106959 1 18 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF394 7 99486519 99500324 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF395 8 28345585 28402701 FALSE 592 -1.0749857791431 8 27471086 30833361 0.593443012170704 1 0 0.593443012170704 1 0 3362275 1 30 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF396 18 35366697 35377337 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 6 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF397 18 35241030 35267133 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 16 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF398 7 149126416 149182802 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF404 19 43872363 43901385 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF407 18 74597870 75065671 FALSE 1266 -0.368834137433099 38 70092203 75288558 1 2 1 1 2 1 5196355 1 14 32 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF408 11 46700818 46705912 FALSE 776 -0.669185952130196 25 46543975 48167221 0.276933305076759 1 0 0.276933305076759 1 0 1623246 1 31 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF41 23 47445879 47482946 FALSE 1474 -0.325556439763856 44 47199062 47467488 0.18904974046126 3 NA 0.18904974046126 3 NA 268426 NA 5 11 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF410 14 73886617 73932511 FALSE 984 -0.486668407942004 36 69054957 74856989 0.593443012170704 2 0 0.593443012170704 2 0 5802032 2 59 12 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF414 19 8509678 8514164 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF415 19 53107879 53133077 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 11 4 TRUE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF416 19 57571566 57578927 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF417 19 57900296 57916610 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF418 19 57921884 57935393 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 0 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF419 19 57487711 57496097 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF420 19 37007857 37130314 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF423 16 49487524 49857919 FALSE 1102 -0.55827998229011 31 46582045 50731834 NA 2 NA NA 2 NA 4149789 NA 26 20 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF425 7 149102784 149126346 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF426 19 9523224 9538645 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF428 19 43607219 43619874 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF429 19 21496682 21556270 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF43 19 21804949 21852125 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF430 19 21020620 21060050 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF431 19 21142024 21196053 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF432 19 52031379 52095738 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 23 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF433 19 12014732 12035741 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF436 1 23359448 23369442 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF438 10 30820207 31031937 FALSE 714 -0.566427378316121 29 29310096 31861649 1 2 1 1 2 1 2551553 1 9 13 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF439 19 11848726 11883750 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF44 19 12224686 12294887 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 11 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF440 19 11814284 11835201 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF441 19 11767000 11784078 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF442 19 12345949 12365905 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF443 19 12429707 12441112 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF444 19 56132599 56160893 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF445 3 44431720 44477670 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF446 19 58474017 58481230 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF449 23 135344796 135363152 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF45 19 43912629 43935278 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 10 5 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF451 6 57086844 57170307 FALSE 471 -0.247794111477788 47 56506571 68638890 0.593443012170704 3 1 0.593443012170704 3 1 12132319 2 15 26 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF454 5 178941191 178966433 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF460 19 57280051 57293569 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF461 19 36637192 36666853 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF462 9 106863097 107013634 FALSE 686 -0.500856538107074 32 99218483 107329665 1 2 1 1 2 1 8111182 1 40 34 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF467 7 149764182 149773479 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF468 19 52838008 52890375 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 14 2 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF469 16 88427471 88440757 FALSE 1125 -0.713795263478428 19 86511058 88721345 0.593443012170704 1 0 0.593443012170704 1 0 2210287 1 24 42 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF470 19 56567511 56588911 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF471 19 56507843 56530221 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF473 19 50025714 50053414 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 13 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF474 5 122129513 122153571 FALSE 391 1.02962638304894 83 122077011 122464187 0.593481580287395 8 NA 0.593481580287395 8 NA 387176 NA 4 5 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF479 7 57119614 57139864 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF48 16 30378106 30400108 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 19 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF480 19 52297177 52325922 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 6 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF483 9 111525159 111577844 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 17 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF484 9 92845031 92878038 FALSE 680 -0.638115105007195 26 91214431 95094099 0.593443012170704 2 0 0.593443012170704 2 0 3879668 2 31 13 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF485 10 43606407 43617903 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF486 19 20167228 20200490 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF487 10 43436841 43483179 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF488 10 47365496 47384273 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF490 19 12577961 12640098 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF491 19 11797667 11809622 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 5 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF492 19 22634324 22667670 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF493 19 21397119 21427573 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF496 1 247297412 247331846 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 12 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF497 19 58354357 58362848 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF500 16 4748239 4767624 FALSE 1081 -0.574688458528848 30 3974711 4762790 0.398146319473827 2 0 0.398146319473827 2 0 788079 2 19 10 1 TRUE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF501 3 44729596 44737083 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF502 3 44712643 44723831 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF503 10 75397830 75401906 FALSE 727 -0.588332246386112 26 73815297 86858107 0.593443012170704 2 0 0.593443012170704 2 0 13042810 2 49 9 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF506 19 19785839 19821751 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF507 19 32345594 32387667 FALSE 1326 -0.282409176824691 46 29923773 32382993 0.261157737158964 3 NA 0.261157737158964 3 NA 2459220 NA 4 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF510 9 96755865 96778129 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 11 1 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF511 10 133308475 133313162 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF511-PRAP1 10 133309410 133352529 FALSE 751 -0.840838775724355 14 132937562 133626652 0.593443012170704 1 0 0.593443012170704 1 0 689090 1 21 15 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF512 2 27582969 27623215 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 15 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF512B 20 63956702 63969865 FALSE 1398 -0.335482186605129 42 62065259 64273510 0.550845998803593 3 0 0.550845998803593 3 0 2208251 3 64 18 5 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF513 2 27377231 27380790 FALSE 124 -0.3149097884495 42 27262853 29181935 0.550845998803593 3 0 0.550845998803593 3 0 1919082 3 33 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF514 2 95147330 95165413 FALSE 153 -0.647610783531781 22 84423751 96208449 1 2 1 1 2 1 11784698 1 65 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF516 18 76358190 76495190 FALSE 1267 -0.7386987671045 19 75410818 80247362 0.593443012170704 1 0 0.593443012170704 1 0 4836544 1 17 16 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF517 8 144798876 144811169 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 8 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF518A 10 96129715 96205288 FALSE 736 -0.600330078267147 26 89034711 97864254 0.593443012170704 2 0 0.593443012170704 2 0 8829543 2 83 24 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF518B 4 10439874 10457410 FALSE 328 -0.731801672231533 19 3229934 18021785 0.593443012170704 1 0 0.593443012170704 1 0 14791851 1 97 13 2 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF519 18 14057457 14132490 FALSE 1244 -0.664331163023574 22 905428 21864676 1 2 1 1 2 1 20959248 1 63 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF521 18 25061926 25352190 FALSE 1248 -0.464712576326811 35 23464058 32770540 1 2 1 1 2 1 9306482 1 34 19 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF524 19 55600022 55603138 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 4 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF525 19 53365693 53392217 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF526 19 42220271 42228201 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF527 19 37371061 37393066 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF528 19 52397849 52418412 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 8 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF529 19 36534774 36605276 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF530 19 57599885 57612722 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF532 18 58862600 58986480 FALSE 1260 1.79126719700034 107 58671560 58920624 0.593481580287395 15 NA 0.593481580287395 15 NA 249064 NA 2 19 0 TRUE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF534 19 52429187 52452315 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 12 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF536 19 30228290 30713538 FALSE 1326 -0.282409176824691 46 29923773 32382993 0.261157737158964 3 NA 0.261157737158964 3 NA 2459220 NA 4 18 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF540 19 37551406 37614097 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 15 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF541 19 47520685 47555856 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 23 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF543 19 57320509 57330776 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF544 19 58228594 58277495 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF546 19 39984134 40021041 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF547 19 57363477 57379565 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF548 19 57389850 57402992 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF549 19 57527325 57557542 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 17 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF550 19 57535257 57559863 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF551 19 57681969 57717301 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 16 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF552 19 57803841 57814913 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF554 19 2819874 2835773 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF555 19 2841435 2860484 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF556 19 2867335 2883445 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF557 19 7069444 7087968 FALSE 1286 -0.658905930884882 22 6665338 7083691 1 2 1 1 2 1 418353 1 13 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF558 19 8806170 8832328 FALSE 1288 -0.685372664943509 22 7440026 8843249 1 2 1 1 2 1 1403223 1 52 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF559 19 9323772 9351162 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 12 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF559-ZNF177 19 9324174 9382617 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF560 19 9466507 9498607 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 14 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF561 19 9604680 9621399 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF562 19 9641808 9675086 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF563 19 12317477 12333720 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF564 19 12525370 12551542 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF565 19 36182060 36246257 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF566 19 36445119 36489902 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF567 19 36687612 36727701 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF568 19 36916329 36998700 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF569 19 37411155 37469275 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF57 19 2900898 2918476 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF570 19 37467585 37488652 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF571 19 37554782 37594790 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF572 8 124973298 124979389 FALSE 636 -0.0164976862540596 56 120502595 125436023 0.593443012170704 3 NA 0.593443012170704 3 NA 4933428 NA 28 8 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF573 19 37735833 37817300 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF574 19 42068477 42081549 FALSE 1340 -0.573548005527181 31 41354733 42255036 NA 2 NA NA 2 NA 900303 NA 32 11 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF575 19 43525497 43536130 FALSE 1343 -0.669910912164422 22 42410807 43535653 1 2 1 1 2 1 1124846 1 20 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF576 19 43596392 43601157 FALSE 1345 -0.526571511277485 32 43577261 45070841 1 2 1 1 2 1 1493580 1 53 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF577 19 51804816 51890950 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 15 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF578 19 52453576 52512154 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 7 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF579 19 55576770 55580845 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF580 19 55635016 55643469 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 2 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF581 19 55635459 55645622 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF582 19 56375846 56393545 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF583 19 56397966 56436035 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF584 19 58401504 58418327 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 9 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF585A 19 37106734 37172741 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 15 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF585B 19 37181579 37218153 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF586 19 57769655 57819939 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 14 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF587 19 57849857 57865112 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF587B 19 57819741 57846238 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF589 3 48241100 48299253 FALSE 252 -0.618130795033722 28 47228666 49358265 NA 2 NA NA 2 NA 2129599 NA 49 12 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF592 15 84748635 84806432 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 19 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF593 1 26169871 26170873 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 4 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF594 17 5179536 5191883 FALSE 1141 -0.735103408609878 19 4939819 7307125 0.593443012170704 1 0 0.593443012170704 1 0 2367306 1 58 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF595 4 53285 88211 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF596 8 232137 264703 FALSE 581 -0.961587005181465 10 166288 7332448 0.593443012170704 1 0 0.593443012170704 1 0 7166160 1 24 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF597 16 3432422 3443553 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 7 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF598 16 1997654 2009823 FALSE 1068 -0.522787555734896 34 1911672 2033359 NA 2 NA NA 2 NA 121687 NA 13 17 4 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF599 19 34758076 34773229 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF600 19 52749942 52786807 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 9 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF605 12 132918308 132956306 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF606 19 57977053 58003349 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 13 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF607 19 37696363 37719790 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF608 5 124636913 124748807 FALSE 392 -0.336901155452395 44 122775231 124648866 0.18904974046126 3 NA 0.18904974046126 3 NA 1873635 NA 7 22 2 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF609 15 64460742 64686068 FALSE 1030 -0.321696600379097 42 51341947 66352900 0.550845998803593 3 0 0.550845998803593 3 0 15010953 3 105 21 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF610 19 52336245 52367778 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 7 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF611 19 52702813 52735073 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 9 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF613 19 51927147 51948759 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF614 19 52012765 52030240 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 10 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF615 19 51991332 52008230 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 14 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF616 19 52113091 52139922 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF618 9 113876282 114056591 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 21 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF619 3 40477113 40490236 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF620 3 40477131 40518736 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 18 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF621 3 40524878 40574685 FALSE 248 -0.687385801589196 22 38165896 40533064 1 2 1 1 2 1 2367168 1 26 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF622 5 16451519 16465792 FALSE 370 -0.368925900088435 38 1318351 35814590 1 2 1 1 2 1 34496239 1 86 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF623 8 143636013 143656418 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF624 17 16620737 16653856 FALSE 1154 -0.755967658511947 18 16234012 17206205 0.387809979850725 1 0 0.387809979850725 1 0 972193 1 13 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF625 19 12142090 12156729 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 6 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF625-ZNF20 19 12132117 12156731 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 14 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF626 19 20620061 20661596 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF627 19 11559374 11619135 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 15 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF628 19 55476332 55484487 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF629 16 30778449 30787202 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF630 23 47983356 48071658 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 12 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF638 2 71276561 71435069 FALSE 148 -0.706962876596695 19 69182573 73958749 0.593443012170704 1 0 0.593443012170704 1 0 4776176 1 51 41 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF639 3 179322991 179338583 FALSE 297 -0.667139090410343 25 179250846 180989581 0.276933305076759 1 0 0.276933305076759 1 0 1738735 1 13 8 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF641 12 48337180 48351414 FALSE 872 -0.573052949137442 31 48045285 49018692 NA 2 NA NA 2 NA 973407 NA 28 8 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF644 1 90915298 91022272 FALSE 34 -0.46378316207909 37 89186414 92513689 NA 2 NA NA 2 NA 3327275 NA 22 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF646 16 31074422 31084196 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 23 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF648 1 182054570 182061712 FALSE 75 -0.436567089371089 35 179847530 186136663 1 2 1 1 2 1 6289133 1 40 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF649 19 51889224 51905040 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 9 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF652 17 49289206 49362473 FALSE 1198 -0.433963064310801 37 48769181 49495436 NA 2 NA NA 2 NA 726255 NA 14 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF653 19 11483427 11505923 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF654 3 88059274 88144665 FALSE 271 -0.374182784035321 41 87990792 88156503 NA 2 NA NA 2 NA 165711 NA 4 17 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF655 7 99558406 99576453 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 11 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF658 9 66856426 66932141 FALSE 669 -0.718863616581332 19 66114571 77647758 0.593443012170704 1 0 0.593443012170704 1 0 11533187 1 44 15 3 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF66 19 20776304 20807322 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF660 3 44578223 44599694 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF662 3 42905731 42917641 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF664 12 123971845 124015439 FALSE 929 -0.541489902986864 29 122078895 132621347 1 2 1 1 2 1 10542452 1 69 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF665 19 53159213 53193386 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF667 19 56439325 56478065 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF668 16 31060843 31074320 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 9 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF669 1 247099962 247104372 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF670 1 247036784 247078755 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 8 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF670-ZNF695 1 246945547 247078811 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 17 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF671 19 57719751 57727624 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF672 1 248838210 248849517 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF674 23 46497727 46545457 FALSE 1472 -0.741792499922808 18 45151710 47024874 0.387809979850725 1 0 0.387809979850725 1 0 1873164 1 7 9 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF675 19 23525631 23687220 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF676 19 22179091 22215775 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF677 19 53235381 53254898 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF678 1 227563543 227677443 FALSE 96 -0.546261203992225 30 226881976 229527357 0.398146319473827 2 0 0.398146319473827 2 0 2645381 2 29 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF679 7 64228474 64266931 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF680 7 64519884 64563106 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF681 19 23739195 23758891 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF682 19 19997058 20039506 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF683 1 26361634 26374522 FALSE 10 -0.677767670689727 22 16761036 26758870 1 2 1 1 2 1 9997834 1 137 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF684 1 40531561 40548169 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 7 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF687 1 151281618 151292180 FALSE 57 -0.364045301290285 41 150966810 152213566 NA 2 NA NA 2 NA 1246756 NA 42 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF688 16 30569346 30572734 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF689 16 30602558 30624012 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF69 19 11887784 11914329 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF691 1 42846573 42852477 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF692 1 248850006 248859144 FALSE 107 -0.394100603035741 41 248521654 248918351 NA 2 NA NA 2 NA 396697 NA 13 13 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF695 1 246945547 247008093 FALSE 105 -0.462805075010125 35 244051443 248407004 1 2 1 1 2 1 4355561 1 57 9 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF696 8 143289676 143298061 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF697 1 119619422 119647773 FALSE 47 1.15403669217262 85 119419521 119622961 0.593481580287395 9 NA 0.593481580287395 9 NA 203440 NA 3 7 1 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF699 19 9294275 9309838 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF7 8 144827464 144847509 FALSE 640 0.101750353154854 61 144517821 145054121 0.315195151543259 5 NA 0.315195151543259 5 NA 536300 NA 14 11 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF70 22 23738678 23751092 FALSE 1424 -1.12667791160603 7 23317677 23779438 0.593443012170704 1 0 0.593443012170704 1 0 461761 1 9 6 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF700 19 11925068 11950773 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF701 19 52555457 52587174 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 5 3 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF703 8 37695751 37700021 FALSE 601 2.22582257079832 120 36935806 37699721 0.593481580287395 20 NA 0.593481580287395 20 NA 763915 NA 2 13 0 FALSE AMP PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF704 8 80628451 80874781 FALSE 625 -0.171311373613218 50 73976259 89921058 0.512147794348469 3 0 0.512147794348469 3 0 15944799 3 50 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF705A 12 8157034 8188537 FALSE 842 -0.749785793032381 18 7924480 8175292 0.387809979850725 1 0 0.387809979850725 1 0 250812 1 7 7 2 TRUE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF705D 8 12104389 12115516 FALSE 586 -0.767319762555111 16 11761752 23328494 0.593443012170704 1 0 0.593443012170704 1 0 11566742 1 77 2 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF705E 11 71814045 71821548 FALSE 797 -0.232458768964209 49 71527371 72139842 0.331933131290263 3 NA 0.331933131290263 3 NA 612471 NA 19 6 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF705G 8 7355517 7385558 FALSE 582 -0.259258726738866 49 7332851 8797519 0.331933131290263 3 NA 0.331933131290263 3 NA 1464668 NA 36 7 4 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF706 8 101177878 101206193 FALSE 630 -0.110206028652129 53 92102827 102238862 0.593443012170704 3 1 0.593443012170704 3 1 10136035 2 52 2 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF707 8 143684452 143713898 FALSE 638 -0.0822883436820591 53 129748689 144510795 0.593443012170704 3 1 0.593443012170704 3 1 14762106 2 109 13 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF708 19 21291160 21329425 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF709 19 12461184 12513854 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 8 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF71 19 56595264 56626481 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF710 15 90001392 90082206 FALSE 1052 -0.427824936130558 37 89803513 90074115 NA 2 NA NA 2 NA 270602 NA 5 10 2 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF711 23 85244032 85273362 FALSE 1497 -0.406072875698314 38 77829300 101348553 1 2 1 1 2 1 23519253 1 51 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF713 7 55887475 55942530 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF714 19 21082159 21125270 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 3 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF716 7 57450177 57473546 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF717 3 75678660 75785583 FALSE 270 -0.657711066772096 22 72908515 87276449 1 2 1 1 2 1 14367934 1 14 14 11 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF718 4 124480 202303 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF720 16 31713229 31794869 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 5 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF721 4 425815 499156 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 2 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF723 19 22832321 22858667 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF724 19 23221599 23250390 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF726 19 23914876 23945159 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF727 7 64045443 64078549 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF728 19 22975468 23003176 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF729 19 22286408 22317176 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF730 19 23075210 23147219 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF732 4 270675 305321 FALSE 322 -0.66367474386825 22 85850 1745026 1 2 1 1 2 1 1659176 1 29 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF735 7 64207090 64220508 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF736 7 64307459 64354860 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF737 19 20535825 20565809 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF738 19 21358930 21379302 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF74 22 20394115 20408461 FALSE 1414 -0.795539559586626 16 15528179 20883500 0.593443012170704 1 0 0.593443012170704 1 0 5355321 1 62 11 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF740 12 53180700 53195141 FALSE 881 -0.601941549610218 28 52900007 53186427 NA 2 NA NA 2 NA 286420 NA 9 15 0 TRUE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF746 7 149472696 149497817 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 13 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF747 16 30530367 30535347 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF749 19 57435329 57445485 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF750 17 82829435 82840578 FALSE 1241 -0.449947851999246 37 82446018 83094553 NA 2 NA NA 2 NA 648535 NA 11 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF75A 16 3305406 3318852 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF75D 23 135248920 135344087 FALSE 1516 -0.482543721585957 37 134460277 136308743 NA 2 NA NA 2 NA 1848466 NA 33 10 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF76 6 35258909 35295985 FALSE 460 -0.490152605891982 35 33444593 36677877 1 2 1 1 2 1 3233284 1 49 13 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF761 19 53431993 53458261 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF763 19 11965037 11980381 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF764 16 30553764 30558498 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF765 19 53389793 53430413 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF766 19 52269571 52296046 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 7 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF768 16 30524001 30526821 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF77 19 2933218 2944971 FALSE 1275 -0.45085191658463 35 2233829 3062714 1 2 1 1 2 1 828885 1 28 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF770 15 34978341 34988287 FALSE 1007 -0.855285824835268 15 34359322 37966588 0.449390955025597 1 0 0.449390955025597 1 0 3607266 1 12 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF771 16 30407297 30431108 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF772 19 57466663 57477570 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 9 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF773 19 57499915 57518404 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 5 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF774 15 90352245 90369146 FALSE 1054 -0.477104304772382 37 90191956 90361221 NA 2 NA NA 2 NA 169265 NA 9 7 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF775 7 150379335 150398631 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF776 19 57746796 57758159 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 8 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF777 7 149431363 149461123 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 13 4 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF778 16 89217703 89237071 FALSE 1126 -0.689388172885317 23 88721652 89228419 0.593443012170704 2 0 0.593443012170704 2 0 506767 2 11 13 4 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF780A 19 40069152 40090938 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 10 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF780B 19 40028260 40056209 FALSE 1334 -0.443645686664265 35 39197041 40226629 1 2 1 1 2 1 1029588 1 34 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF781 19 37667751 37692322 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF782 9 96816472 96875623 FALSE 684 -0.609188811368902 26 95876031 99069687 0.593443012170704 2 0 0.593443012170704 2 0 3193656 2 31 11 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF783 7 149262171 149297302 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 10 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF784 19 55620742 55624601 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF785 16 30573740 30585771 FALSE 1099 -0.354792571465619 38 30195000 31130950 1 2 1 1 2 1 935950 1 44 6 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF786 7 149069643 149090782 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 12 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF787 19 56087366 56121280 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF789 7 99472841 99503650 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF79 9 127424374 127445372 FALSE 692 -0.508564426117217 34 125175907 127778646 NA 2 NA NA 2 NA 2602739 NA 24 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF790 19 36817428 36850787 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF791 19 12610918 12633840 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF792 19 34956354 34964049 FALSE 1329 -0.539010835628551 29 33391502 35714698 1 2 1 1 2 1 2323196 1 48 10 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF793 19 37506939 37548762 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF799 19 12390016 12401271 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF8 19 58278951 58302805 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF80 3 114234631 114237578 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF800 7 127346790 127431924 FALSE 560 -0.122093019554693 53 126446080 129164564 0.593443012170704 3 1 0.593443012170704 3 1 2718484 2 27 11 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF804A 2 184598366 184939492 FALSE 193 -0.751876233525248 18 181544778 185786306 0.387809979850725 1 0 0.387809979850725 1 0 4241528 1 12 16 4 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF804B 7 88759368 89337057 FALSE 543 -0.0733610679973829 53 87602941 92590329 0.593443012170704 3 1 0.593443012170704 3 1 4987388 2 30 21 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF805 19 57240685 57255135 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 10 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF808 19 52527652 52564464 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 8 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF81 23 47836902 48002561 FALSE 1476 -0.317071382697382 44 47574379 48773474 0.18904974046126 3 NA 0.18904974046126 3 NA 1199095 NA 25 19 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF813 19 53467735 53496255 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF814 19 57848731 57889074 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 21 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF816 19 52949379 52962911 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 4 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF816-ZNF321P 19 52928475 52962823 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 6 1 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF821 16 71859680 71895336 FALSE 1115 -0.547653776326154 29 68860507 72171188 1 2 1 1 2 1 3310681 1 57 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF823 19 11721265 11739009 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF827 4 145757627 145938635 FALSE 357 -0.547258172662211 29 143186086 151760800 1 2 1 1 2 1 8574714 1 35 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF829 19 36888124 36916291 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 7 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF83 19 52594060 52690496 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 6 2 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF830 17 34961530 34963775 FALSE 1165 -0.602622011139083 26 32024739 35017555 0.593443012170704 2 0 0.593443012170704 2 0 2992816 2 23 5 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF831 20 59123381 59259113 FALSE 1396 -0.20354273420644 52 58981312 59194662 0.426118104232275 3 NA 0.426118104232275 3 NA 213350 NA 6 21 0 TRUE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF835 19 56661981 56671783 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF836 19 52153864 52171643 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 14 0 TRUE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF837 19 58367618 58381060 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF839 14 102317377 102342702 FALSE 996 -0.579401018683582 31 102193509 102726551 NA 2 NA NA 2 NA 533042 NA 7 15 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF84 12 133037292 133063304 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 9 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF841 19 52064466 52095765 FALSE 1356 -0.251298194168366 47 51337476 52154922 0.593443012170704 3 1 0.593443012170704 3 1 817446 2 31 13 1 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF843 16 31432593 31443160 FALSE 1101 -0.417567590585704 37 31139328 46581950 NA 2 NA NA 2 NA 15442622 NA 25 4 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF844 19 12064699 12081565 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF845 19 53333746 53356906 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 5 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF846 19 9751993 9793180 FALSE 1293 -0.75333352049154 16 8981183 10119912 0.593443012170704 1 0 0.593443012170704 1 0 1138729 1 32 9 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF85 19 20923222 20950697 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF850 19 36714383 36772825 FALSE 1332 -0.500606970618001 32 35740000 39110084 1 2 1 1 2 1 3370084 1 96 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF852 3 44494847 44510636 FALSE 250 -0.665338402300905 22 41246981 47009305 1 2 1 1 2 1 5762324 1 74 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF853 7 6615617 6624290 FALSE 522 -0.393728699829227 41 6410400 12688836 NA 2 NA NA 2 NA 6278436 NA 26 10 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF860 3 31981771 31991628 FALSE 243 1.13111558236862 84 31662127 31989687 0.593481580287395 9 NA 0.593481580287395 9 NA 327560 NA 2 5 0 TRUE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF862 7 149838367 149867479 FALSE 573 -0.285227701128287 45 149005256 150947685 0.561906404904972 3 0 0.561906404904972 3 0 1942429 3 34 19 1 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF865 19 55605405 55617269 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 12 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF878 19 12043805 12052939 FALSE 1302 -0.541277504248245 31 11394462 12847675 NA 2 NA NA 2 NA 1453213 NA 62 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF879 5 179023752 179035064 FALSE 421 -0.418561408026577 35 177522082 180591498 1 2 1 1 2 1 3069416 1 41 9 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF880 19 52369917 52385795 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 8 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF883 9 112997120 113050043 FALSE 688 -0.721923069824393 19 108869153 122390341 0.593443012170704 1 0 0.593443012170704 1 0 13521188 1 89 14 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF888 19 52904417 52923481 FALSE 1359 0.0972727754751156 61 52269621 53109252 0.315195151543259 5 NA 0.315195151543259 5 NA 839631 NA 23 7 0 FALSE AMP (many states) suppress_likely_unfocal_large_gain FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF891 12 133106817 133130473 FALSE 931 -0.44725574580184 37 132687737 133234369 NA 2 NA NA 2 NA 546632 NA 14 6 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF90 19 20077994 20127076 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF91 19 23304991 23395560 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF92 7 65373799 65401135 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 8 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF93 19 19900913 19963464 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 4 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF98 19 22391019 22532485 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNF99 19 22752183 22784107 FALSE 1323 -0.528911874845023 32 19182653 29610646 1 2 1 1 2 1 10427993 1 61 5 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNFX1 20 49237946 49278426 FALSE 1389 -0.43018197930776 36 47658376 50277584 0.593443012170704 2 0 0.593443012170704 2 0 2619208 2 18 36 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNHIT1 7 101217668 101224190 FALSE 551 0.00344001385044786 58 101042495 101624155 0.387728048050399 4 NA 0.387728048050399 4 NA 581660 NA 14 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNHIT2 11 65116403 65117708 FALSE 791 -0.290623048491361 45 65107890 67424437 0.561906404904972 3 0 0.561906404904972 3 0 2316547 3 92 5 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNHIT3 17 36486629 36499310 FALSE 1168 -0.633360747292929 28 35577583 38318678 NA 2 NA NA 2 NA 2741095 NA 48 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNHIT6 1 85649423 85708433 FALSE 33 -0.554364019319145 29 85321606 89185388 1 2 1 1 2 1 3863782 1 22 11 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNRD1 6 30058899 30064909 FALSE 439 -0.82923210363861 15 29953327 30073259 0.449390955025597 1 0 0.449390955025597 1 0 119932 1 3 4 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNRF1 16 74999030 75110994 FALSE 1119 -0.69372578600914 22 74456613 81709717 1 2 1 1 2 1 7253104 1 47 5 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNRF2 7 30284307 30367692 FALSE 527 -0.278894487808246 46 27095505 30839222 0.261157737158964 3 NA 0.261157737158964 3 NA 3743717 NA 37 5 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNRF3 22 28883592 29057487 TRUE 1428 1.19691663517619 87 28883530 29057424 0.593481580287395 9 NA 0.593481580287395 9 NA 173894 NA 1 39 0 FALSE INDETERMINATE PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZNRF4 19 5455431 5456856 FALSE 1283 -0.166515219977271 52 5290928 5587926 0.426118104232275 3 NA 0.426118104232275 3 NA 296998 NA 4 6 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZP1 11 60867562 60875693 FALSE 780 -0.334651677001063 44 60415574 60920870 0.18904974046126 3 NA 0.18904974046126 3 NA 505296 NA 14 13 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZP2 16 21197450 21214510 FALSE 1090 -0.516292465266983 32 13954337 23596267 1 2 1 1 2 1 9641930 1 86 19 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZP3 7 76397518 76442071 FALSE 535 -0.371023006449093 38 55366187 77954817 1 2 1 1 2 1 22588630 1 102 16 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZP4 1 237877864 237890922 FALSE 100 -0.636076517076801 28 236208014 241494849 NA 2 NA NA 2 NA 5286835 NA 15 12 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZPBP 7 49850421 50121329 FALSE 531 -0.397886779600974 38 41966481 50159086 1 2 1 1 2 1 8192605 1 52 14 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZPBP2 17 39868164 39877896 FALSE 1177 -0.607808940385743 27 39868373 40278219 1 2 1 1 2 1 409846 1 14 9 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZPLD1 3 102099244 102479841 FALSE 276 -0.477462105643576 35 98516877 119613113 1 2 1 1 2 1 21096236 1 94 12 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZPR1 11 116773799 116788050 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 14 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZRANB1 10 124942123 124988189 FALSE 749 -0.74935433051192 16 121836694 132808904 0.593443012170704 1 0 0.593443012170704 1 0 10972210 1 62 12 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZRANB2 1 71063291 71081297 FALSE 26 -0.517917541168637 32 65148589 71081013 1 2 1 1 2 1 5932424 1 29 10 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZRANB3 2 135136916 135531236 FALSE 173 -0.492482321955857 37 132781993 135985420 NA 2 NA NA 2 NA 3203427 NA 13 30 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZRSR2 23 15790472 15823260 FALSE 1455 0.162648419400782 63 15589392 15825738 0.54220702508464 4 NA 0.54220702508464 4 NA 236346 NA 5 14 0 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN1 19 58034032 58054631 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN10 16 3088890 3099317 FALSE 1076 -0.475985694863551 35 2761565 3300298 1 2 1 1 2 1 538733 1 29 13 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN12 6 28378955 28399734 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 9 4 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN16 6 28124560 28130082 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN18 19 58083838 58118427 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 10 2 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN2 15 84600986 84627796 FALSE 1043 -0.836725095430404 14 78811161 87854753 0.593443012170704 1 0 0.593443012170704 1 0 9043592 1 56 10 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN20 1 33472645 33496507 FALSE 13 -0.591549732979207 26 31742172 37723096 0.593443012170704 2 0 0.593443012170704 2 0 5980924 2 87 15 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN21 7 100049774 100065038 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 8 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN22 19 58327019 58342332 FALSE 1361 -0.464342356079557 37 57927856 58571268 NA 2 NA NA 2 NA 643412 NA 31 7 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN23 6 28431930 28443502 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN25 7 99616946 99632407 FALSE 546 -0.0482900918487717 55 93135686 100949710 0.382396641383437 4 0 0.382396641383437 4 0 7814024 4 108 9 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN26 6 28267010 28278224 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN29 15 43358172 43371025 FALSE 1018 -0.630386484617317 28 42695800 43401783 NA 2 NA NA 2 NA 705983 NA 13 13 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN30 18 35251058 35290245 FALSE 1250 -0.60013339701785 26 33738618 37067102 0.593443012170704 2 0 0.593443012170704 2 0 3328484 2 19 8 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN31 6 28324693 28356271 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 6 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN32 16 3382081 3401065 FALSE 1077 -0.771123410602983 18 3300572 3565018 0.387809979850725 1 0 0.387809979850725 1 0 264446 1 14 11 1 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN4 19 57668935 57679152 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 6 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN5A 19 56219670 56368383 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 23 0 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN5B 19 56189570 56197920 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 2 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN5C 19 56202301 56209452 FALSE 1360 -0.236535849005382 47 53109467 57927491 0.593443012170704 3 1 0.593443012170704 3 1 4818024 2 171 7 3 FALSE GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSCAN9 6 28224886 28233482 FALSE 435 -0.692242669593926 22 27958035 29003933 1 2 1 1 2 1 1045898 1 19 7 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM1 20 45881227 45885266 FALSE 1386 0.148259010786639 63 45877825 45895143 0.54220702508464 4 NA 0.54220702508464 4 NA 17318 NA 5 7 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM2 2 186827835 186849208 FALSE 195 -0.662110163685243 25 185815441 189784079 0.276933305076759 1 0 0.276933305076759 1 0 3968638 1 17 13 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM3 20 45857617 45879122 FALSE 1385 -0.692589539170839 22 45469765 45877779 1 2 1 1 2 1 408014 1 19 9 2 TRUE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM4 19 13795460 13832230 FALSE 1305 -0.545023825712463 31 12945943 14482967 NA 2 NA NA 2 NA 1537024 NA 34 18 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM5 1 45016399 45306209 FALSE 16 -0.613946044676212 26 39955398 46036048 0.593443012170704 2 0 0.593443012170704 2 0 6080650 2 96 21 0 FALSE CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM6 5 61332273 61546170 FALSE 380 -0.560022973593867 29 58494510 67196584 1 2 1 1 2 1 8702074 1 31 20 0 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM7 17 15976560 15999717 FALSE 1151 -0.88068169254305 12 12666170 16027391 0.593443012170704 1 0 0.593443012170704 1 0 3361221 1 21 5 0 FALSE HETLOSS PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM8 10 73785582 73801797 FALSE 726 -0.166721470091497 52 73646759 73815038 0.426118104232275 3 NA 0.426118104232275 3 NA 168279 NA 9 37 1 FALSE GAIN (many states) PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZSWIM9 19 48170692 48197620 FALSE 1353 -0.508746660386709 32 47264605 50378417 1 2 1 1 2 1 3113812 1 125 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZUP1 6 116635618 116668794 FALSE 485 -0.583685042369543 27 114058187 117272414 1 2 1 1 2 1 3214227 1 20 12 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZW10 11 113733187 113773811 FALSE 815 -0.343560904058892 42 108383142 118431502 0.550845998803593 3 0 0.550845998803593 3 0 10048360 3 90 17 0 FALSE CNLOH & GAIN PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZWILCH 15 66504959 66550128 FALSE 1032 -0.613130187479146 28 66494532 66716482 NA 2 NA NA 2 NA 221950 NA 5 20 3 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZWINT 10 56357228 56361275 FALSE 718 -0.573983733903577 29 43155249 60733307 1 2 1 1 2 1 17578058 1 80 8 2 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZXDA 23 57906708 57910820 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 9 1 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZXDB 23 57591652 57597545 FALSE 1485 -0.397630767771917 41 53428663 63785179 NA 2 NA NA 2 NA 10356516 NA 37 9 0 FALSE DIPLOID or CNLOH PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZXDC 3 126437601 126475919 FALSE 281 -0.482911723104506 35 121570723 128408032 1 2 1 1 2 1 6837309 1 62 15 3 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZYG11A 1 52842511 52894998 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZYG11B 1 52726467 52827342 FALSE 21 -0.506365859818807 32 50978034 58530707 1 2 1 1 2 1 7552673 1 65 16 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZYX 7 143381080 143391111 FALSE 571 -0.416787005383431 35 143263515 148800496 1 2 1 1 2 1 5536981 1 34 11 1 FALSE DIPLOID PASS FFPE_HD789_01_p2_gDNA_03_A23WGJTLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1 ZZEF1 17 4004445 4143020 FALSE 1139 -0.689318382839317 22 3440225 4889719 1 2 1 1 2 1 1449494 1 39 63 0 FALSE DIPLOID PASS