cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 1136_814-N1-BDNA-1_A237CFYLT3_1 --max_event_count 5 -v 1136_814-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.vcf.gz --contamination 1136_814-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.contamination_data.tsv --tumor_segments 1136_814-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.segments --orientation_priors 1136_814-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.orientation_data.tsv 1136_814-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:161000001, elapsed 0.0s, est remaining 0.6s, peak mem 168MB, user 0.2s, sys 0.3s, output queue size 86
progress 10% @chr2:74000001, elapsed 0.1s, est remaining 0.5s, peak mem 168MB, user 0.4s, sys 1.1s, output queue size 245
progress 15% @chr3:7000001, elapsed 0.1s, est remaining 0.5s, peak mem 169MB, user 0.7s, sys 1.7s, output queue size 183
progress 20% @chr3:161000001, elapsed 0.1s, est remaining 0.4s, peak mem 169MB, user 1.0s, sys 2.3s, output queue size 344
progress 25% @chr4:120000001, elapsed 0.1s, est remaining 0.4s, peak mem 170MB, user 1.3s, sys 2.9s, output queue size 255
progress 30% @chr5:36000001, elapsed 0.2s, est remaining 0.4s, peak mem 170MB, user 1.7s, sys 3.5s, output queue size 142
progress 35% @chr6:30000001, elapsed 0.2s, est remaining 0.3s, peak mem 170MB, user 2.0s, sys 4.1s, output queue size 303
progress 40% @chr7:53000001, elapsed 0.2s, est remaining 0.3s, peak mem 171MB, user 2.4s, sys 4.6s, output queue size 242
progress 45% @chr8:69000001, elapsed 0.2s, est remaining 0.3s, peak mem 171MB, user 2.8s, sys 5.1s, output queue size 117
progress 50% @chr9:13000001, elapsed 0.3s, est remaining 0.3s, peak mem 171MB, user 3.1s, sys 5.8s, output queue size 279
progress 55% @chr10:103000001, elapsed 0.3s, est remaining 0.2s, peak mem 172MB, user 3.4s, sys 6.3s, output queue size 154
progress 60% @chr11:128000001, elapsed 0.3s, est remaining 0.2s, peak mem 172MB, user 3.7s, sys 6.9s, output queue size 185
progress 65% @chr12:20000001, elapsed 0.3s, est remaining 0.2s, peak mem 173MB, user 4.1s, sys 7.1s, output queue size 347
progress 70% @chr14:94000001, elapsed 0.3s, est remaining 0.1s, peak mem 173MB, user 4.4s, sys 7.5s, output queue size 508
progress 75% @chr15:85000001, elapsed 0.4s, est remaining 0.1s, peak mem 173MB, user 4.8s, sys 8.2s, output queue size 433
progress 80% @chr18:2000001, elapsed 0.4s, est remaining 0.1s, peak mem 173MB, user 5.0s, sys 8.8s, output queue size 595
progress 85% @chr20:24000001, elapsed 0.4s, est remaining 0.1s, peak mem 174MB, user 5.4s, sys 9.3s, output queue size 757
progress 90% @chrX:1, elapsed 0.4s, est remaining 0.0s, peak mem 174MB, user 5.6s, sys 9.9s, output queue size 919
progress 95% @chrY:33000001, elapsed 0.5s, est remaining 0.0s, peak mem 174MB, user 6.0s, sys 10.5s, output queue size 67
progress 100% @HLA-DRB1*16:02:01:1, elapsed 0.5s, est remaining 0.0s, peak mem 175MB, user 6.2s, sys 11.8s, output queue size 3480
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 48 max 48
algo: TNfilter
license: sentieon:TNhaplotyper=48
input file size: 3908633
output file size: 2745105
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 77877 calls 8.031 user 0.244 sys 10.695 real
"predict_filter": 25959 calls 0.618 user 0.209 sys 1.190 real
advance: 3219322 calls 0.767 user 4.022 sys 7.434 real
done: 1 calls 0.004 user 0.000 sys 0.013 real
execute: 1 calls 0.001 user 0.000 sys 0.636 real
fetch_ref: 61884 calls 0.296 user 0.187 sys 0.681 real
idle: 2847 calls 1.172 user 0.086 sys 85.512 real
init: 1 calls 0.552 user 0.051 sys 1.275 real
overall: 184176640 mem 25.376 user 13.451 sys 2.909 real