cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample 1136_7OO-N1-BDNA-1_A237CFYLT3_1 --max_event_count 5 -v 1136_7OO-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.vcf.gz --contamination 1136_7OO-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.contamination_data.tsv --tumor_segments 1136_7OO-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.segments --orientation_priors 1136_7OO-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.orientation_data.tsv 1136_7OO-N1-BDNA-1_A237CFYLT3_1.tnseq_tumor_only.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:95000001, elapsed 0.0s, est remaining 0.9s, peak mem 353MB, user 0.5s, sys 1.0s, output queue size 159
progress 10% @chr2:107000001, elapsed 0.1s, est remaining 0.7s, peak mem 353MB, user 1.0s, sys 2.5s, output queue size 310
progress 15% @chr2:70000001, elapsed 0.1s, est remaining 0.6s, peak mem 353MB, user 1.4s, sys 4.1s, output queue size 464
progress 20% @chr3:188000001, elapsed 0.1s, est remaining 0.5s, peak mem 353MB, user 1.9s, sys 5.9s, output queue size 616
progress 25% @chr4:178000001, elapsed 0.2s, est remaining 0.5s, peak mem 353MB, user 2.3s, sys 7.6s, output queue size 697
progress 30% @chr5:125000001, elapsed 0.2s, est remaining 0.4s, peak mem 353MB, user 2.8s, sys 9.4s, output queue size 431
progress 35% @chr6:107000001, elapsed 0.2s, est remaining 0.4s, peak mem 355MB, user 3.2s, sys 11.2s, output queue size 592
progress 40% @chr7:67000001, elapsed 0.2s, est remaining 0.4s, peak mem 357MB, user 3.6s, sys 12.9s, output queue size 753
progress 45% @chr7:97000001, elapsed 0.3s, est remaining 0.3s, peak mem 357MB, user 4.0s, sys 14.5s, output queue size 915
progress 50% @chr10:40000001, elapsed 0.3s, est remaining 0.3s, peak mem 357MB, user 4.4s, sys 16.1s, output queue size 1077
progress 55% @chr10:97000001, elapsed 0.3s, est remaining 0.3s, peak mem 357MB, user 4.9s, sys 17.5s, output queue size 1238
progress 60% @chr12:46000001, elapsed 0.4s, est remaining 0.2s, peak mem 358MB, user 5.3s, sys 19.2s, output queue size 1400
progress 65% @chr13:2000001, elapsed 0.4s, est remaining 0.2s, peak mem 358MB, user 5.7s, sys 20.7s, output queue size 1562
progress 70% @chr12:120000001, elapsed 0.4s, est remaining 0.2s, peak mem 358MB, user 6.1s, sys 22.5s, output queue size 1723
progress 75% @chr16:77000001, elapsed 0.4s, est remaining 0.1s, peak mem 359MB, user 6.5s, sys 24.1s, output queue size 1885
progress 80% @chr18:29000001, elapsed 0.5s, est remaining 0.1s, peak mem 359MB, user 7.0s, sys 26.0s, output queue size 2047
progress 85% @chr21:18000001, elapsed 0.5s, est remaining 0.1s, peak mem 360MB, user 7.6s, sys 27.7s, output queue size 2210
progress 90% @chrX:52000001, elapsed 0.5s, est remaining 0.1s, peak mem 361MB, user 8.3s, sys 29.3s, output queue size 2371
progress 95% @chr15:8000001, elapsed 0.6s, est remaining 0.0s, peak mem 361MB, user 8.7s, sys 30.7s, output queue size 2692
progress 100% @HLA-DRB1*15:03:01:02:1, elapsed 0.7s, est remaining 0.0s, peak mem 362MB, user 9.2s, sys 35.1s, output queue size 5957
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
signature: 000606a6
features: 1f8bfbff fffa320b
extended: f1bf07ab 00407f5a
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 128 max 128
algo: TNfilter
license: sentieon:TNhaplotyper=128
input file size: 3632995
output file size: 2547300
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 73755 calls 9.599 user 0.375 sys 17.460 real
"predict_filter": 24585 calls 1.604 user 0.648 sys 3.230 real
advance: 3219322 calls 1.173 user 14.739 sys 21.079 real
done: 1 calls 0.020 user 0.000 sys 0.025 real
execute: 1 calls 0.002 user 0.001 sys 1.179 real
fetch_ref: 58728 calls 0.375 user 0.228 sys 1.274 real
idle: 15753 calls 7.342 user 0.532 sys 437.984 real
init: 1 calls 1.377 user 0.375 sys 2.641 real
overall: 381104128 mem 40.112 user 39.087 sys 4.543 real