File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/7b8821f93d242919fd6cefe04636f4/.command.sh
Size
549 bytes
Task
NFCORE_SAREK:SAREK:VCF_TMB:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (869_XTN-T1-TDNA-1_A23WGJTLT4_5_vs_869_XTN-N1-BDNA-1_A23FG3YLT4_1;tnseq)
Attempt

Content

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#!/bin/bash -Ceuo pipefail
bgzip  --threads 1 -c  869_XTN-T1-TDNA-1_A23WGJTLT4_5_vs_869_XTN-N1-BDNA-1_A23FG3YLT4_1.tnseq.filtered_snpEff.ann.vcf > 869_XTN-T1-TDNA-1_A23WGJTLT4_5_vs_869_XTN-N1-BDNA-1_A23FG3YLT4_1.tnseq.filtered_snpEff.ann.vcf.gz
tabix --threads 1  869_XTN-T1-TDNA-1_A23WGJTLT4_5_vs_869_XTN-N1-BDNA-1_A23FG3YLT4_1.tnseq.filtered_snpEff.ann.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_TMB:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS