File Info
- Filename
- NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.deconfliction_audit.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0035/tools__44c19e3d--20260605-213512/reports/deconfliction/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.deconfliction_audit.tsv
- Size
- 848 bytes
- Workflow Run
- sarek-cgp-dna-exp0035-tools-20260605-213512
- Published
- Jun 05, 2026 6:14 PM
Content
View in new tab| conflict_type | chrom | pos | ref | alt | gene | chip_blood_vaf | chip_tumor_vaf | chip_tlod | germ_gt | germ_ab | germ_rf_prob | cosmic_heme | som_vaf | resolution | reason |
| chip_germline | chr2 | 29232333 | A | T | ALK | 0.4937 | 0.0001 | 2160.0 | 0/1 | 0.493 | 0.9923 | 0 | 0.0 | germline | AB>=0.4_and_RF_PROB>0.9 |
| chip_germline | chr5 | 132589791 | G | C | RAD50 | 0.4944 | 0.0 | 873.0 | 0/1 | 0.499 | 0.9948 | 0 | 0.0 | germline | AB>=0.4_and_RF_PROB>0.9 |
| chip_germline | chr9 | 136505847 | C | A | NOTCH1 | 0.4584 | 0.001 | 2920.0 | 0/1 | 0.458 | 0.994 | 0 | 0.0 | germline | AB>=0.4_and_RF_PROB>0.9 |
| chip_germline | chr12 | 14457265 | C | T | ATF7IP | 0.4171 | 0.0 | 209.0 | 0/1 | 0.417 | 0.9923 | 0 | 0.0 | germline | AB>=0.4_and_RF_PROB>0.9 |
| chip_germline | chr13 | 28037245 | T | G | FLT3 | 0.5318 | 0.0004 | 749.0 | 0/1 | 0.532 | 0.9948 | 0 | 0.0 | germline | AB>=0.4_and_RF_PROB>0.9 |
| chip_germline | chr16 | 72788113 | TGCTGCTGCTGCTGTAGTTGCC | T | ZFHX3 | 0.4687 | 0.0 | 3660.0 | 0/1 | 0.44 | 1.0 | 0 | 0.0 | germline | AB>=0.4_and_RF_PROB>0.9 |
7 rows