{
"metadata": {
"version": "2.0",
"mode": "variant"
},
"pairs": {
"1136_85O-T1-TDNA-1_A23WJ5GLT4_8_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_8",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 155988,
"num_indels": 12016
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 79.807
},
"sample_identity": {
"tumor_normal_correlation": 0.5832,
"matched": false
},
"tmb": {
"filtered_variant_count": 5065.0,
"non_synonymous_count": 2398.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_9_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_9",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_indels": 11635,
"num_snps": 140963
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 83.688
},
"sample_identity": {
"tumor_normal_correlation": 0.5328,
"matched": false
},
"tmb": {
"filtered_variant_count": 1423.0,
"non_synonymous_count": 104.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_indels": 12647,
"num_snps": 161306
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 100.0
},
"sample_identity": {
"tumor_normal_correlation": 0.3716,
"matched": false
},
"tmb": {
"filtered_variant_count": 1982.0,
"non_synonymous_count": 193.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_9_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_9",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_snps": 142530,
"num_indels": 12197
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 83.259
},
"sample_identity": {
"tumor_normal_correlation": 0.5347,
"matched": false
},
"tmb": {
"filtered_variant_count": 1737.0,
"non_synonymous_count": 157.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_10_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_10",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_indels": 12491,
"num_snps": 140613
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 83.257
},
"sample_identity": {
"tumor_normal_correlation": 0.5376,
"matched": false
},
"tmb": {
"filtered_variant_count": 1757.0,
"non_synonymous_count": 146.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_7_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_7",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_snps": 128494,
"num_indels": 11881
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 72.142
},
"sample_identity": {
"tumor_normal_correlation": 0.6568,
"matched": true
},
"tmb": {
"filtered_variant_count": 1639.0,
"non_synonymous_count": 165.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_7_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_7",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 143900,
"num_indels": 13443
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 79.576
},
"sample_identity": {
"tumor_normal_correlation": 0.5916,
"matched": false
},
"tmb": {
"filtered_variant_count": 5707.0,
"non_synonymous_count": 2515.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_9_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_9",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 143440,
"num_indels": 10875
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 85.882
},
"sample_identity": {
"tumor_normal_correlation": 0.5331,
"matched": false
},
"tmb": {
"filtered_variant_count": 1117.0,
"non_synonymous_count": 127.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_3_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_3",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 103282,
"num_indels": 10940
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 30.88
},
"sample_identity": {
"tumor_normal_correlation": 0.9256,
"matched": true
},
"tmb": {
"filtered_variant_count": 4468.0,
"non_synonymous_count": 2579.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_6_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_6",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 12174,
"num_snps": 136219
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 66.564
},
"sample_identity": {
"tumor_normal_correlation": 0.7201,
"matched": true
},
"tmb": {
"filtered_variant_count": 5406.0,
"non_synonymous_count": 2604.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_7_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_7",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_snps": 112586,
"num_indels": 13112
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 71.217
},
"sample_identity": {
"tumor_normal_correlation": 0.674,
"matched": true
},
"tmb": {
"filtered_variant_count": 1408.0,
"non_synonymous_count": 70.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_8_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_8",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_indels": 12389,
"num_snps": 116279
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 71.424
},
"sample_identity": {
"tumor_normal_correlation": 0.67,
"matched": true
},
"tmb": {
"filtered_variant_count": 1246.0,
"non_synonymous_count": 72.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_9_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_9",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 156056,
"num_indels": 13122
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 88.843
},
"sample_identity": {
"tumor_normal_correlation": 0.4906,
"matched": false
},
"tmb": {
"filtered_variant_count": 5424.0,
"non_synonymous_count": 1434.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_5_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_5",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_snps": 102784,
"num_indels": 11623
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 54.666
},
"sample_identity": {
"tumor_normal_correlation": 0.822,
"matched": true
},
"tmb": {
"filtered_variant_count": 1033.0,
"non_synonymous_count": 85.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_10_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_10",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 155012,
"num_indels": 13865
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 88.744
},
"sample_identity": {
"tumor_normal_correlation": 0.4899,
"matched": false
},
"tmb": {
"filtered_variant_count": 5682.0,
"non_synonymous_count": 1472.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_4_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_4",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 10706,
"num_snps": 105516
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 32.114
},
"sample_identity": {
"tumor_normal_correlation": 0.9182,
"matched": true
},
"tmb": {
"filtered_variant_count": 4558.0,
"non_synonymous_count": 2582.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_5_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_5",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_indels": 12353,
"num_snps": 98932
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 52.43
},
"sample_identity": {
"tumor_normal_correlation": 0.8124,
"matched": true
},
"tmb": {
"filtered_variant_count": 998.0,
"non_synonymous_count": 115.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_6_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_6",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_indels": 11669,
"num_snps": 103229
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 53.682
},
"sample_identity": {
"tumor_normal_correlation": 0.8266,
"matched": true
},
"tmb": {
"filtered_variant_count": 922.0,
"non_synonymous_count": 76.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_5_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_5",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 132759,
"num_indels": 12432
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 65.339
},
"sample_identity": {
"tumor_normal_correlation": 0.7296,
"matched": true
},
"tmb": {
"filtered_variant_count": 5314.0,
"non_synonymous_count": 2568.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_6_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_6",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_snps": 99703,
"num_indels": 12231
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 52.7
},
"sample_identity": {
"tumor_normal_correlation": 0.815,
"matched": true
},
"tmb": {
"filtered_variant_count": 963.0,
"non_synonymous_count": 108.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_8_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_8",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_snps": 118920,
"num_indels": 13213
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 71.011
},
"sample_identity": {
"tumor_normal_correlation": 0.6654,
"matched": true
},
"tmb": {
"filtered_variant_count": 1696.0,
"non_synonymous_count": 139.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_2",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 5987,
"num_snps": 17461
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 0.07
},
"sample_identity": {
"tumor_normal_correlation": 0.9806,
"matched": true
},
"tmb": {
"filtered_variant_count": 682.0,
"non_synonymous_count": 406.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_10_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_10",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 143876,
"num_indels": 11586
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 85.979
},
"sample_identity": {
"tumor_normal_correlation": 0.5338,
"matched": false
},
"tmb": {
"filtered_variant_count": 1328.0,
"non_synonymous_count": 157.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_2_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_2",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_snps": 20226,
"num_indels": 8270
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 0.071
},
"sample_identity": {
"tumor_normal_correlation": 0.9803,
"matched": true
},
"tmb": {
"filtered_variant_count": 385.0,
"non_synonymous_count": 38.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_1_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_1",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 37563,
"num_indels": 9534
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 0.103
},
"sample_identity": {
"tumor_normal_correlation": 0.9724,
"matched": true
},
"tmb": {
"filtered_variant_count": 4317.0,
"non_synonymous_count": 2559.0,
"effective_coding_region_size": 34.15
}
},
"1136_85O-T1-TDNA-1_A23WJ5GLT4_2_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1136_85O-T1-TDNA-1_A23WJ5GLT4_2",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 9280,
"num_snps": 37014
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 0.094
},
"sample_identity": {
"tumor_normal_correlation": 0.9737,
"matched": true
},
"tmb": {
"filtered_variant_count": 4234.0,
"non_synonymous_count": 2552.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_4_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_4",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_snps": 68655,
"num_indels": 11184
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 21.887
},
"sample_identity": {
"tumor_normal_correlation": 0.9586,
"matched": true
},
"tmb": {
"filtered_variant_count": 533.0,
"non_synonymous_count": 30.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_6_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_6",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 10467,
"num_snps": 103392
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 55.68
},
"sample_identity": {
"tumor_normal_correlation": 0.8235,
"matched": true
},
"tmb": {
"filtered_variant_count": 1042.0,
"non_synonymous_count": 350.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_8_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_8",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 126422,
"num_indels": 10929
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 74.034
},
"sample_identity": {
"tumor_normal_correlation": 0.661,
"matched": true
},
"tmb": {
"filtered_variant_count": 1362.0,
"non_synonymous_count": 229.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_10_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_10",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_indels": 13721,
"num_snps": 132911
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 83.127
},
"sample_identity": {
"tumor_normal_correlation": 0.5381,
"matched": false
},
"tmb": {
"filtered_variant_count": 2219.0,
"non_synonymous_count": 174.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_5_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_5",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 100857,
"num_indels": 10358
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 55.052
},
"sample_identity": {
"tumor_normal_correlation": 0.8307,
"matched": true
},
"tmb": {
"filtered_variant_count": 1121.0,
"non_synonymous_count": 377.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_snps": 164035,
"num_indels": 13192
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 100.0
},
"sample_identity": {
"tumor_normal_correlation": 0.3706,
"matched": false
},
"tmb": {
"filtered_variant_count": 2559.0,
"non_synonymous_count": 306.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_4_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_4",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 9232,
"num_snps": 67701
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 22.851
},
"sample_identity": {
"tumor_normal_correlation": 0.9586,
"matched": true
},
"tmb": {
"filtered_variant_count": 800.0,
"non_synonymous_count": 378.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_7_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_7",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 11524,
"num_snps": 125002
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 73.946
},
"sample_identity": {
"tumor_normal_correlation": 0.6611,
"matched": true
},
"tmb": {
"filtered_variant_count": 1589.0,
"non_synonymous_count": 255.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_3",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 65995,
"num_indels": 9765
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 22.052
},
"sample_identity": {
"tumor_normal_correlation": 0.9568,
"matched": true
},
"tmb": {
"filtered_variant_count": 828.0,
"non_synonymous_count": 378.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_3_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_3",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_snps": 75931,
"num_indels": 11914
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 20.917
},
"sample_identity": {
"tumor_normal_correlation": 0.9253,
"matched": true
},
"tmb": {
"filtered_variant_count": 488.0,
"non_synonymous_count": 61.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_1_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_1",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_indels": 9427,
"num_snps": 20114
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 0.072
},
"sample_identity": {
"tumor_normal_correlation": 0.9817,
"matched": true
},
"tmb": {
"filtered_variant_count": 441.0,
"non_synonymous_count": 35.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_1_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_1",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_indels": 10515,
"num_snps": 38454
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 0.091
},
"sample_identity": {
"tumor_normal_correlation": 0.9449,
"matched": true
},
"tmb": {
"filtered_variant_count": 325.0,
"non_synonymous_count": 43.0,
"effective_coding_region_size": 34.15
}
},
"1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_1_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "1029_BTOJ-T1-TDNA-1_A23WJ5GLT4_1",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 7456,
"num_snps": 16551
}
},
"contamination": {
"normal_contamination_pct": 0.06,
"tumor_contamination_pct": 0.053
},
"sample_identity": {
"tumor_normal_correlation": 0.9807,
"matched": true
},
"tmb": {
"filtered_variant_count": 677.0,
"non_synonymous_count": 398.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_2_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_2",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_indels": 11147,
"num_snps": 38365
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 0.079
},
"sample_identity": {
"tumor_normal_correlation": 0.9446,
"matched": true
},
"tmb": {
"filtered_variant_count": 330.0,
"non_synonymous_count": 39.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_indels": 12856,
"num_snps": 161780
}
},
"sample_identity": {
"tumor_normal_correlation": 0.3632,
"matched": false
},
"tmb": {
"filtered_variant_count": 2077.0,
"non_synonymous_count": 194.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 12650,
"num_snps": 160264
}
},
"sample_identity": {
"tumor_normal_correlation": 0.3749,
"matched": false
},
"tmb": {
"filtered_variant_count": 2043.0,
"non_synonymous_count": 193.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_indels": 13340,
"num_snps": 164633
}
},
"sample_identity": {
"tumor_normal_correlation": 0.3654,
"matched": false
},
"tmb": {
"filtered_variant_count": 2645.0,
"non_synonymous_count": 311.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1",
"normal_sample": "1136_85O-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 13203,
"num_snps": 163023
}
},
"sample_identity": {
"tumor_normal_correlation": 0.375,
"matched": false
},
"tmb": {
"filtered_variant_count": 2597.0,
"non_synonymous_count": 298.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_2",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_snps": 159051,
"num_indels": 11915
}
},
"sample_identity": {
"tumor_normal_correlation": 0.3979,
"matched": false
},
"tmb": {
"filtered_variant_count": 1901.0,
"non_synonymous_count": 521.0,
"effective_coding_region_size": 34.15
}
},
"1136_5WB-T1-TDNA-1_A23WJ5GLT4_4_vs_1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"tumor_sample": "1136_5WB-T1-TDNA-1_A23WJ5GLT4_4",
"normal_sample": "1136_5WB-N1-BDNA-1_B23KFG5LT4_1",
"callers": {
"strelka": {
"num_indels": 12021,
"num_snps": 75880
}
},
"contamination": {
"normal_contamination_pct": 0.075,
"tumor_contamination_pct": 20.857
},
"sample_identity": {
"tumor_normal_correlation": 0.9241,
"matched": true
},
"tmb": {
"filtered_variant_count": 468.0,
"non_synonymous_count": 59.0,
"effective_coding_region_size": 34.15
}
},
"1136_6I8-T1-TDNA-1_A23WJ5GLT4_3_vs_1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"tumor_sample": "1136_6I8-T1-TDNA-1_A23WJ5GLT4_3",
"normal_sample": "1136_6I8-N1-BDNA-1_B23MHTGLT4_1",
"callers": {
"strelka": {
"num_snps": 68180,
"num_indels": 11661
}
},
"contamination": {
"normal_contamination_pct": 0.115,
"tumor_contamination_pct": 22.055
},
"sample_identity": {
"tumor_normal_correlation": 0.9588,
"matched": true
},
"tmb": {
"filtered_variant_count": 543.0,
"non_synonymous_count": 30.0,
"effective_coding_region_size": 34.15
}
},
"FFPE_HD789_01_p2_gDNA_03_A23WJ5GLT4_1_vs_NA12878_c_0002_gDNA_0005_B23KYWJLT4_1": {
"tumor_sample": "FFPE_HD789_01_p2_gDNA_03_A23WJ5GLT4_1",
"normal_sample": "NA12878_c_0002_gDNA_0005_B23KYWJLT4_1",
"callers": {
"strelka": {
"num_indels": 32305,
"num_snps": 189936
}
},
"contamination": {
"normal_contamination_pct": 0.079,
"tumor_contamination_pct": 57.577
},
"sample_identity": {
"tumor_normal_correlation": 0.5186,
"matched": false
},
"tmb": {
"filtered_variant_count": 26577.0,
"non_synonymous_count": 9763.0,
"effective_coding_region_size": 34.15
}
},
"PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1_vs_1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"tumor_sample": "PX_FFPE_kid_nat_03_03_A23WJ5GLT4_1",
"normal_sample": "1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1",
"callers": {
"strelka": {
"num_indels": 12422,
"num_snps": 161696
}
},
"sample_identity": {
"tumor_normal_correlation": 0.3995,
"matched": false
},
"tmb": {
"filtered_variant_count": 2250.0,
"non_synonymous_count": 628.0,
"effective_coding_region_size": 34.15
}
}
},
"samples": {
"1136_85O-N1-BDNA-1_B23KGCJLT4_1": {
"callers": {
"deconflict": {
"chip_germ_chip_wins": 0,
"chip_germ_germ_wins": 0,
"chip_germ_suppress_both": 0,
"chip_somatic_suspect": 0,
"germ_som_germ_wins": 0,
"germ_som_suppress_both": 0,
"total_chip_germ_conflicts": 0,
"total_germ_som_conflicts": 0
}
}
},
"1136_6I8-N1-BDNA-1_B23MHTGLT4_1": {
"callers": {
"deconflict": {
"chip_germ_chip_wins": 0,
"chip_germ_germ_wins": 0,
"chip_germ_suppress_both": 0,
"chip_somatic_suspect": 0,
"germ_som_germ_wins": 0,
"germ_som_suppress_both": 0,
"total_chip_germ_conflicts": 0,
"total_germ_som_conflicts": 0
}
}
},
"1136_5WB-N1-BDNA-1_B23KFG5LT4_1": {
"callers": {
"deconflict": {
"chip_germ_chip_wins": 0,
"chip_germ_germ_wins": 0,
"chip_germ_suppress_both": 0,
"chip_somatic_suspect": 0,
"germ_som_germ_wins": 0,
"germ_som_suppress_both": 0,
"total_chip_germ_conflicts": 0,
"total_germ_som_conflicts": 0
}
}
},
"1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1": {
"callers": {
"deconflict": {
"chip_germ_chip_wins": 0,
"chip_germ_germ_wins": 2,
"chip_germ_suppress_both": 0,
"chip_somatic_suspect": 0,
"germ_som_germ_wins": 0,
"germ_som_suppress_both": 0,
"total_chip_germ_conflicts": 2,
"total_germ_som_conflicts": 0
}
}
},
"NA12878_c_0002_gDNA_0005_B23KYWJLT4_1": {
"callers": {
"deconflict": {
"chip_germ_chip_wins": 0,
"chip_germ_germ_wins": 6,
"chip_germ_suppress_both": 0,
"chip_somatic_suspect": 0,
"germ_som_germ_wins": 0,
"germ_som_suppress_both": 0,
"total_chip_germ_conflicts": 6,
"total_germ_som_conflicts": 0
}
}
}
}
}