Prefix: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0035/tools__44c19e3d--20260605-213512
| Path | ||
|---|---|---|
| /reports/raw_qc/snpeff/sentieon_haplotyper_rf/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.deconflicted_germline_custom.ann_snpEff.genes.txt | Jun 05, 2026 6:18 PM | |
| /reports/raw_qc/snpeff/sentieon_haplotyper_rf/1136_85O-N1-BDNA-1_B23KGCJLT4_1/1136_85O-N1-BDNA-1_B23KGCJLT4_1.deconflicted_germline_custom.ann_snpEff.csv | Jun 05, 2026 6:18 PM | |
| /reports/raw_qc/snpeff/sentieon_haplotyper_rf/1136_5WB-N1-BDNA-1_B23KFG5LT4_1/1136_5WB-N1-BDNA-1_B23KFG5LT4_1.deconflicted_germline_custom.ann_snpEff.csv | Jun 05, 2026 6:18 PM | |
| /reports/raw_qc/snpeff/sentieon_haplotyper_rf/1136_6I8-N1-BDNA-1_B23MHTGLT4_1/snpEff_summary.html | Jun 05, 2026 6:18 PM | |
| /reports/variant_qc.csv | Jun 05, 2026 6:17 PM | |
| /reports/variant_qc.json | Jun 05, 2026 6:16 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.deconflicted_germline.FILTER.summary | Jun 05, 2026 6:16 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.deconflicted_germline.TsTv.qual | Jun 05, 2026 6:16 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.deconflicted_germline.TsTv.count | Jun 05, 2026 6:16 PM | |
| /reports/raw_qc/bcftools/sentieon_haplotyper_rf/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.deconflicted_germline.bcftools_stats.txt | Jun 05, 2026 6:15 PM | |
| /variant_calling/chip_variants/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.chip_report.vcf.gz | Jun 05, 2026 6:15 PM | |
| /variant_calling/chip_variants/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.chip_report.vcf.gz.tbi | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1136_5WB-N1-BDNA-1_B23KFG5LT4_1/1136_5WB-N1-BDNA-1_B23KFG5LT4_1.deconflicted_germline.FILTER.summary | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.deconflicted_germline.FILTER.summary | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.deconflicted_germline.TsTv.count | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1/1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.deconflicted_germline.TsTv.qual | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1136_5WB-N1-BDNA-1_B23KFG5LT4_1/1136_5WB-N1-BDNA-1_B23KFG5LT4_1.deconflicted_germline.TsTv.qual | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1136_5WB-N1-BDNA-1_B23KFG5LT4_1/1136_5WB-N1-BDNA-1_B23KFG5LT4_1.deconflicted_germline.TsTv.count | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1136_6I8-N1-BDNA-1_B23MHTGLT4_1/1136_6I8-N1-BDNA-1_B23MHTGLT4_1.deconflicted_germline.TsTv.qual | Jun 05, 2026 6:15 PM | |
| /reports/raw_qc/vcftools/sentieon_haplotyper_rf/1136_6I8-N1-BDNA-1_B23MHTGLT4_1/1136_6I8-N1-BDNA-1_B23MHTGLT4_1.deconflicted_germline.FILTER.summary | Jun 05, 2026 6:15 PM |