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[INFO] Cohort blacklist: 68611 positions
[INFO] Gene-family blacklist: 76473 positions
[INFO] ENCODE blacklist: 636 intervals
[INFO] Gene tiers: 19423 genes, max_tier=2
[INFO] Pre-filter: 8 PASS, 31409 FAIL, 31417 total
[INFO] Survivors BED: 8 sites written to NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.survivors.bed
[INFO] no_functional_impact: 21940
[INFO] hard_filter_reject: 7094
[INFO] cohort_blacklist: 1608
[INFO] gene_not_in_universe: 550
[INFO] pon_artifact: 173
[INFO] gene_family_blacklist: 39
[INFO] encode_blacklist: 5