.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/cd9259c19a83c3ed92fca1954ec70c/.command.err
Size: 565 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:PRE_FILTER_CHIP_CANDIDATES (1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

[INFO] Loading resources...
[INFO] Cohort blacklist: 68611 positions
[INFO] Gene-family blacklist: 76473 positions
[INFO] ENCODE blacklist: 636 intervals
[INFO] Gene tiers: 19423 genes, max_tier=2
[INFO] Pre-filter: 9 PASS, 32261 FAIL, 32270 total
[INFO] Survivors BED: 9 sites written to 1029_BTOJ-N1-BDNA-1_B23KGCJLT4_1.survivors.bed
[INFO]   no_functional_impact: 23139
[INFO]   hard_filter_reject: 6740
[INFO]   cohort_blacklist: 1642
[INFO]   gene_not_in_universe: 480
[INFO]   pon_artifact: 229
[INFO]   gene_family_blacklist: 27
[INFO]   encode_blacklist: 4