File Info

Filename
.command.sh
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/3f7c791e9ae2ff9cb44bea29262c5f/.command.sh
Size
555 bytes
Task
NFCORE_SAREK:SAREK:VCF_TMB:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX (1136_85O-T1-TDNA-1_A23WJ5GLT4_8_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1;tnseq)
Attempt

Content

View in new tab 
#!/bin/bash -Ceuo pipefail
bgzip  --threads 1 -c  1136_85O-T1-TDNA-1_A23WJ5GLT4_8_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1.tnseq.filtered_snpEff.ann.vcf > 1136_85O-T1-TDNA-1_A23WJ5GLT4_8_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1.tnseq.filtered_snpEff.ann.vcf.gz
tabix --threads 1  1136_85O-T1-TDNA-1_A23WJ5GLT4_8_vs_1136_85O-N1-BDNA-1_B23KGCJLT4_1.tnseq.filtered_snpEff.ann.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:VCF_TMB:VCF_ANNOTATE_SNPEFF:TABIX_BGZIPTABIX":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS