.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (1136_5WB-N1-BDNA-1_B23KFG5LT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/c3e8f1623af5269b066642f12e9d88/.command.err
Size: 324 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (1136_5WB-N1-BDNA-1_B23KFG5LT4_1)
Attempt

Content

[INFO] Scoring params: TLOD>=60, blood:tumor>=2.0
[INFO] Blacklist: 68611 positions
[INFO] COSMIC heme: 113942 variants
[INFO] Gene tiers: 19423 genes
[INFO] Pass 1: Reading and scoring variants...
[INFO] Read 27829 variants
[INFO] Pass 2: Writing scored variants...
[INFO] Scored: 0 CHIP_PASS, 27829 CHIP_FAIL, 27829 total