.command.sh - Workdir - NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/12aa3ccdb1139ce3e5ab7ef19f5c5d/.command.sh
Size: 84.8 KB
Task: NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
Attempt
Content

#!/bin/bash -Ceuo pipefail
cat << 'EOF' > manifest.json
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EOF

    aggregate_qc_metrics.py \
        --manifest manifest.json \
        --files-dir . \
        --output variant_qc.json

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC":
    python: $(python --version | sed 's/Python //g')
    aggregate_qc_metrics: 2.0.0
END_VERSIONS