cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval sites.bed --interval_padding 200 -i 1136_6I8-T1-TDNA-1_A23WJ5GLT4_1.recalibrated.bam --algo TNhaplotyper2 --tumor_sample 1136_6I8-T1-TDNA-1_A23WJ5GLT4_1 --given 1136_6I8-N1-BDNA-1_B23MHTGLT4_1.stripped.vcf.gz 1136_6I8-N1-BDNA-1_B23MHTGLT4_1.tumor_genotyped.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 12% @chr11:92882944, elapsed 0.1s, est remaining 0.6s, peak mem 146MB, user 0.0s, sys 0.0s, output queue size 0
progress 24% @chr9:5126143, elapsed 0.1s, est remaining 0.4s, peak mem 246MB, user 0.2s, sys 0.1s, output queue size 1
progress 37% @chr11:108248896, elapsed 0.1s, est remaining 0.2s, peak mem 272MB, user 0.3s, sys 0.1s, output queue size 2
progress 50% @chrX:15803958, elapsed 0.2s, est remaining 0.2s, peak mem 338MB, user 0.4s, sys 0.1s, output queue size 3
progress 62% @chr2:73986256, elapsed 0.3s, est remaining 0.2s, peak mem 494MB, user 0.6s, sys 0.2s, output queue size 4
progress 75% @chr10:110601604, elapsed 0.3s, est remaining 0.1s, peak mem 500MB, user 0.8s, sys 0.2s, output queue size 3
progress 87% @chr12:12718084, elapsed 0.4s, est remaining 0.1s, peak mem 542MB, user 1.1s, sys 0.3s, output queue size 1
progress 100% @chr15:41766994, elapsed 0.6s, est remaining 0.0s, peak mem 572MB, user 1.5s, sys 0.5s, output queue size 1
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000606a6
  features: 1f8bfbff fffa320b
  extended: f1bf07ab 00407f5a
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8375C CPU @ 2.90GHz
threads: 12 max 128
algo: TNhaplotyper2
license: sentieon:TNhaplotyper=12
input file size: 125713009854
output file size: 24528
reads: 1973873809
contig: 8 intervals 3211 bases
"assemble": 13 calls 0.160 user 0.014 sys 0.176 real
"assemble_addRead": 13 calls 0.017 user 0.001 sys 0.009 real
"assemble_buildGraph": 28 calls 0.062 user 0.002 sys 0.083 real
"assemble_computecigar": 22 calls 0.001 user 0.000 sys 0.003 real
"assemble_kg_build_calcsize": 28 calls 0.032 user 0.000 sys 0.041 real
"assemble_kg_build_clear": 31 calls 0.000 user 0.000 sys 0.005 real
"assemble_kg_build_prepare": 56 calls 0.044 user 0.010 sys 0.050 real
"assemble_kg_build_threading": 25 calls 0.030 user 0.002 sys 0.041 real
"assemble_kg_op1": 25 calls 0.027 user 0.002 sys 0.030 real
"assemble_kg_op2": 25 calls 0.000 user 0.000 sys 0.000 real
"assemble_kg_op3": 25 calls 0.000 user 0.000 sys 0.000 real
"assemble_sg_clean": 22 calls 0.009 user 0.000 sys 0.002 real
"assemble_sg_create": 22 calls 0.008 user 0.000 sys 0.002 real
"checkGraph": 13 calls 0.000 user 0.000 sys 0.000 real
"findHaplotype": 13 calls 0.001 user 0.000 sys 0.004 real
advance: 8 calls 0.898 user 0.438 sys 1.363 real
assemble_region: 13 calls 0.177 user 0.017 sys 0.189 real
build_variants: 12 calls 0.000 user 0.000 sys 0.000 real
calc: 16 calls 0.046 user 0.000 sys 0.034 real
calc_region: 12 calls 0.289 user 0.007 sys 0.364 real
call_region: 12 calls 0.023 user 0.000 sys 0.012 real
clip_region: 25 calls 0.015 user 0.001 sys 0.028 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.003 user 0.000 sys 0.611 real
fetch: 16 calls 0.052 user 0.000 sys 0.085 real
fetch_ref: 29 calls 0.008 user 0.005 sys 0.003 real
fetch_region: 13 calls 0.040 user 0.000 sys 0.036 real
idle: 82 calls 0.221 user 0.004 sys 16.514 real
init: 1 calls 0.002 user 0.000 sys 0.003 real
pairhmm: 88 calls 0.428 user 0.013 sys 0.672 real
realign: 12 calls 0.107 user 0.000 sys 0.158 real
region: 16 calls 0.520 user 0.025 sys 0.601 real
tracker: 16 calls 0.000 user 0.000 sys 0.000 real
trim_region: 13 calls 0.000 user 0.000 sys 0.000 real
overall: 600317952 mem 2.287 user 0.526 sys 1.722 real