.command.sh - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (1136_5WB-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/54064142de6e41141f12a2a8b96ca5/.command.sh
Size: 306 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE (1136_5WB-N1-BDNA-1_B23KFG5LT4_1;sentieon_haplotyper_rf)
Attempt

Content

#!/bin/bash -Ceuo pipefail
tabix \
    --threads 1 \
     \
    1136_5WB-N1-BDNA-1_B23KFG5LT4_1.haplotyper_rf.gt_corrected.vcf.gz

cat <<-END_VERSIONS > versions.yml
"NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:TABIX_GERMLINE":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS