.command.err - Workdir - NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (1136_85O-N1-BDNA-1_B23KGCJLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/e3e0c7366375c609a658965ca6943e/.command.err
Size: 324 bytes
Task: NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:SCORE_CHIP_VARIANTS (1136_85O-N1-BDNA-1_B23KGCJLT4_1)
Attempt

Content

[INFO] Scoring params: TLOD>=60, blood:tumor>=2.0
[INFO] Blacklist: 68611 positions
[INFO] COSMIC heme: 113942 variants
[INFO] Gene tiers: 19423 genes
[INFO] Pass 1: Reading and scoring variants...
[INFO] Read 24366 variants
[INFO] Pass 2: Writing scored variants...
[INFO] Scored: 1 CHIP_PASS, 24365 CHIP_FAIL, 24366 total