succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 4m 54s 1m 58s 2m 34s 22s 386.8 MB 103% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 9s 5s - - 5.4 MB 105% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38;null) 9s 7s - - 6.1 MB 106% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr15_81322899-81322948;null) 9s 8s - - 6.0 MB 112% 1.5 MB 392.9 KB 0 bytes 396.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008;null) 10s 8s - - 6.2 MB 102% 1.6 MB 444.9 KB 0 bytes 448.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961;null) 9s 7s - - 3.3 MB 60% 352.7 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr4_40123127-40123212;null) 7s 6s - - 6.1 MB 96% 1.5 MB 424.9 KB 0 bytes 432.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_114905828-114905899;null) 6s 5s - - 6.1 MB 94% 1.6 MB 439.2 KB 0 bytes 444.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 5s 0s 0s 0 bytes 86% 154.6 KB 47.2 KB 0 bytes 48.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_032-N1-BDNA-1_2375WFLT3_s01) 1m 45s 3s - - 14.0 MB 118% 5.8 MB 111.0 KB 5.4 MB 116.0 KB 2
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_05O-N1-BDNA-1_2375WFLT3_s02) 1m 53s 5s - - 18.4 MB 119% 5.9 MB 111.0 KB 5.6 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_0DT-N1-BDNA-1_2375WFLT3_s03) 1m 43s 4s - - 13.6 MB 124% 5.8 MB 110.9 KB 5.5 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_0NX-N1-BDNA-1_2375WFLT3_s04) 1m 41s 4s - - 14.3 MB 96% 5.8 MB 111.0 KB 5.4 MB 116.0 KB 2
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_1G0-N1-BDNA-1_2375WFLT3_s05) 1m 54s 3s - - 15.3 MB 103% 5.8 MB 111.1 KB 5.6 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_1H5-N1-BDNA-1_2375WFLT3_s06) 1m 51s 7s - - 15.0 MB 114% 5.8 MB 111.0 KB 5.6 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_2IN-N1-BDNA-1_2375WFLT3_s07) 1m 25s 4s - - 3.3 MB 82% 5.7 MB 110.7 KB 5.4 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_2LI-N1-BDNA-1_2375WFLT3_s08) 1m 39s 10s - - 18.1 MB 101% 5.7 MB 110.8 KB 5.5 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_3N0-N1-BDNA-1_2375WFLT3_s09) 1m 44s 6s - - 13.2 MB 99% 5.8 MB 111.0 KB 5.5 MB 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_3OH-N1-BDNA-1_2375WFLT3_s10) 1m 47s 5s - - 13.6 MB 122% 5.8 MB 110.8 KB 5.4 MB 116.0 KB 2
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_4J3-N1-BDNA-1_2375WFLT3_s11) 1m 49s 4s - - 18.2 MB 117% 5.8 MB 111.0 KB 5.6 MB 116.0 KB 2
346 items found |
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