NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX (1029_4J3-N1-BDNA-1_2375WFLT3_s11) - sarek-daq-bams-hla-optitype-8a99ba01 - Workflow Tracker

Runs
sarek-daq-ba..pe-8a99ba01
Tasks
BAM_ESTIMATE_SEX (1029_4J3-N1-BDNA-1_2375WFLT3_s11)

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Task Info

Status: succeeded
Hash: 7275f5d5a7d4
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX
Tag: 1029_4J3-N1-BDNA-1_2375WFLT3_s11
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 01/2082aa
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/2082aa8cb921ef33746c6a086d75c5
Native ID: nf-012082aa8cb921ef33746c6a086d75c5-3b7cc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 1
Memory (peak / alloc): 18.2 MB / 1.0 GB
Process I/O (rchar / wchar): 5.8 MB / 111.0 KB
Disk I/O (read / write): 5.6 MB / 116.0 KB
Host: i-0a043d603e4a79c0d ( on-demand)

Runtime

Submitted: Feb 03, 2026 5:23:43 PM
Completed: Feb 03, 2026 5:25:33 PM
Total Duration: 1m 49s

Phases

Queue: 4s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: failed
Hash: ca/3d3093
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/3d3093e7e8e2a600071c16f2ea042f
Native ID: nf-ca3d3093e7e8e2a600071c16f2ea042f-fd3cf

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 1
Memory (peak / alloc): - / 1.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0698daf25f90b5a24 ( spot)

Runtime

Submitted: Feb 03, 2026 5:21:31 PM
Completed: Feb 03, 2026 5:22:57 PM
Total Duration: -

Phases

Queue: 25s
Execution: -
Stage/Unstage: -