.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_47P-T1-TDNA-1_A23MCTVLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/e8d75befc7ffef9c105b9ba114fdae/.command.log
Size: 889 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_47P-T1-TDNA-1_A23MCTVLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00527_0068_A23MCTVLT4__d7a6b981--20260325-072016/alignments/recalibrated/1136_47P-T1-TDNA-1_A23MCTVLT4_1/1136_47P-T1-TDNA-1_A23MCTVLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/e8d75befc7ffef9c105b9ba114fdae/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/e8d75befc7ffef9c105b9ba114fdae/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00527_0068_A23MCTVLT4__d7a6b981--20260325-072016/alignments/recalibrated/1136_47P-T1-TDNA-1_A23MCTVLT4_1/1136_47P-T1-TDNA-1_A23MCTVLT4_1.recalibrated.bam