.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_77Q-T1-TDNA-1_B23NYHYLT4_12)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/9d536733fd83a1d79936a9beb9dad3/.command.log
Size: 926 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_77Q-T1-TDNA-1_B23NYHYLT4_12)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00166_0260_B23NYHYLT4__2cd6b81d--20260306-064011/alignments/recalibrated/1136_77Q-T1-TDNA-1_B23NYHYLT4_12/1136_77Q-T1-TDNA-1_B23NYHYLT4_12.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/9d536733fd83a1d79936a9beb9dad3/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00166_0260_B23NYHYLT4__2cd6b81d--20260306-064011/alignments/recalibrated/1136_77Q-T1-TDNA-1_B23NYHYLT4_12/1136_77Q-T1-TDNA-1_B23NYHYLT4_12.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/9d536733fd83a1d79936a9beb9dad3/.command.run
==> STAGING COMPLETE (5 inputs)