.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_BPLF-T1-TDNA-1_23K7YCLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/d49f165b1531d5b209d45a1bfda12d/.command.log
Size: 881 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_BPLF-T1-TDNA-1_23K7YCLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_atx_exp0001/20260203_LH00527_0050_B23K7YCLT4__84f45f52--20260206-182017/preprocessing/recalibrated/1029_BPLF-T1-TDNA-1_23K7YCLT4_1/1029_BPLF-T1-TDNA-1_23K7YCLT4_1.recal.bam
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_atx_exp0001/20260203_LH00527_0050_B23K7YCLT4__84f45f52--20260206-182017/preprocessing/recalibrated/1029_BPLF-T1-TDNA-1_23K7YCLT4_1/1029_BPLF-T1-TDNA-1_23K7YCLT4_1.recal.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/d49f165b1531d5b209d45a1bfda12d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/d49f165b1531d5b209d45a1bfda12d/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_BPLF-T1-TDNA-1_23K7YCLT4_1.recal.bam.bai