File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/1c41c5d49be31238f5c91280ba99b3/.command.log
Size
872 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_2ZR-T1-TDNA-1_B23VCNCLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260511_LH00519_0091_B23VCNCLT4__8afaba2b--20260513-165034/alignments/recalibrated/1029_2ZR-T1-TDNA-1_B23VCNCLT4_1/1029_2ZR-T1-TDNA-1_B23VCNCLT4_1.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260511_LH00519_0091_B23VCNCLT4__8afaba2b--20260513-165034/alignments/recalibrated/1029_2ZR-T1-TDNA-1_B23VCNCLT4_1/1029_2ZR-T1-TDNA-1_B23VCNCLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/1c41c5d49be31238f5c91280ba99b3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/1c41c5d49be31238f5c91280ba99b3/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_2ZR-T1-TDNA-1_B23VCNCLT4_1.recalibrated.bam.bai