File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/513d31f9a93e21d567718f70e8f5b0/.command.log
Size
922 bytes
Task
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_7NX-T1-TDNA-1_A23NN2MLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/513d31f9a93e21d567718f70e8f5b0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/513d31f9a93e21d567718f70e8f5b0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1136_7NX-T1-TDNA-1_A23NN2MLT4_1/1136_7NX-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260424_LH00527_0077_A23NN2MLT4__c86dea0e--20260507-182003/alignments/recalibrated/1136_7NX-T1-TDNA-1_A23NN2MLT4_1/1136_7NX-T1-TDNA-1_A23NN2MLT4_1.recalibrated.bam.bai
==> STAGING COMPLETE (5 inputs)