File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/38d8c0c9cdaa13550296916aa01b76/.command.log
Size
877 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_PAP-T1-TDNA-1_B23NYHYLT4_12)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00166_0260_B23NYHYLT4__2cd6b81d--20260306-064011/alignments/recalibrated/1029_PAP-T1-TDNA-1_B23NYHYLT4_12/1029_PAP-T1-TDNA-1_B23NYHYLT4_12.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/38d8c0c9cdaa13550296916aa01b76/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00166_0260_B23NYHYLT4__2cd6b81d--20260306-064011/alignments/recalibrated/1029_PAP-T1-TDNA-1_B23NYHYLT4_12/1029_PAP-T1-TDNA-1_B23NYHYLT4_12.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/38d8c0c9cdaa13550296916aa01b76/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-T1-TDNA-1_B23NYHYLT4_12.recalibrated.bam.bai