Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_atx_exp0001/20251222_LH00527_0043_B23FC2GLT4__84f45f52--20260205-044652/preprocessing/recalibrated/1029_BA0-T1-TDNA-1_23FC2GLT4_s20/1029_BA0-T1-TDNA-1_23FC2GLT4_s20.recal.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3ed9217f97b1355c6a9fbe33105ff9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/3ed9217f97b1355c6a9fbe33105ff9/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_atx_exp0001/20251222_LH00527_0043_B23FC2GLT4__84f45f52--20260205-044652/preprocessing/recalibrated/1029_BA0-T1-TDNA-1_23FC2GLT4_s20/1029_BA0-T1-TDNA-1_23FC2GLT4_s20.recal.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_BA0-T1-TDNA-1_23FC2GLT4_s20.recal.bam.bai