File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/3f8f1cac3a261ca25ad1cbc4842594/.command.log
Size
886 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_4J3-T1-TDNA-1_23FC2GLT4_s11)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/3f8f1cac3a261ca25ad1cbc4842594/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/3f8f1cac3a261ca25ad1cbc4842594/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_atx_exp0001/20251222_LH00527_0043_B23FC2GLT4__84f45f52--20260205-044652/preprocessing/recalibrated/1029_4J3-T1-TDNA-1_23FC2GLT4_s11/1029_4J3-T1-TDNA-1_23FC2GLT4_s11.recal.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_atx_exp0001/20251222_LH00527_0043_B23FC2GLT4__84f45f52--20260205-044652/preprocessing/recalibrated/1029_4J3-T1-TDNA-1_23FC2GLT4_s11/1029_4J3-T1-TDNA-1_23FC2GLT4_s11.recal.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_4J3-T1-TDNA-1_23FC2GLT4_s11.recal.bam.bai