.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_6SH-T1-TDNA-1_B23VCMYLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/dcf32ab3a98ddf55d7a5054e6a75b5/.command.log
Size: 889 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_6SH-T1-TDNA-1_B23VCMYLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260513_LH00527_0085_B23VCMYLT4__8afaba2b--20260515-102024/alignments/recalibrated/1136_6SH-T1-TDNA-1_B23VCMYLT4_1/1136_6SH-T1-TDNA-1_B23VCMYLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/dcf32ab3a98ddf55d7a5054e6a75b5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/dcf32ab3a98ddf55d7a5054e6a75b5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260513_LH00527_0085_B23VCMYLT4__8afaba2b--20260515-102024/alignments/recalibrated/1136_6SH-T1-TDNA-1_B23VCMYLT4_1/1136_6SH-T1-TDNA-1_B23VCMYLT4_1.recalibrated.bam