Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/20260212_LH00166_0244_A237CFYLT3__aa3fd045--20260224-223853/alignments/recalibrated/1029_YCN-N1-BDNA-1_A237CFYLT3_1/1029_YCN-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/e0c2ebca5c62df585974b0bd34720d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/e0c2ebca5c62df585974b0bd34720d/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/20260212_LH00166_0244_A237CFYLT3__aa3fd045--20260224-223853/alignments/recalibrated/1029_YCN-N1-BDNA-1_A237CFYLT3_1/1029_YCN-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai