Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BIHO-T1-TDNA-1_23K7YCLT4_1/1029_BIHO-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/afdfa989063a2d5928262c12467a87/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/afdfa989063a2d5928262c12467a87/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0050_B23K7YCLT4__5d8e7d70--20260228-200338/alignments/recalibrated/1029_BIHO-T1-TDNA-1_23K7YCLT4_1/1029_BIHO-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_BIHO-T1-TDNA-1_23K7YCLT4_1.recalibrated.bam.bai