Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/a44fa87f1567e0fc99700ac500ce9e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/a44fa87f1567e0fc99700ac500ce9e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260501_LH00519_0088_B23TTNGLT4__0ce77ad5--20260503-033010/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23TTNGLT4_1/1029_BJH0-T1-TDNA-1_B23TTNGLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260501_LH00519_0088_B23TTNGLT4__0ce77ad5--20260503-033010/alignments/recalibrated/1029_BJH0-T1-TDNA-1_B23TTNGLT4_1/1029_BJH0-T1-TDNA-1_B23TTNGLT4_1.recalibrated.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-T1-TDNA-1_B23TTNGLT4_1.recalibrated.bam.bai