.command.log - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_5Z2-T1-TDNA-1_A23MYM7LT4_5)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/415b9b3b2933b82233bfed8ac45d05/.command.log
Size: 922 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_5Z2-T1-TDNA-1_A23MYM7LT4_5)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/415b9b3b2933b82233bfed8ac45d05/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/415b9b3b2933b82233bfed8ac45d05/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00995_0017_A23MYM7LT4__5b7749bb--20260306-133014/alignments/recalibrated/1136_5Z2-T1-TDNA-1_A23MYM7LT4_5/1136_5Z2-T1-TDNA-1_A23MYM7LT4_5.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00995_0017_A23MYM7LT4__5b7749bb--20260306-133014/alignments/recalibrated/1136_5Z2-T1-TDNA-1_A23MYM7LT4_5/1136_5Z2-T1-TDNA-1_A23MYM7LT4_5.recalibrated.bam.bai
==> STAGING COMPLETE (5 inputs)