.command.err - Workdir - NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (1029_BBAU-N1-BDNA-1_A23MHW3LT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/3cbcc300435f3b815237b40704db29/.command.err
Size: 372 bytes
Task: NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (1029_BBAU-N1-BDNA-1_A23MHW3LT4_1)
Attempt

Content

[W::hts_idx_load3] The index file is older than the data file: 1029_BBAU-N1-BDNA-1_A23MHW3LT4_1.recalibrated.bam.bai
ls: *.per-base.d4: No such file or directory
ls: *.quantized.bed.gz: No such file or directory
ls: *.quantized.bed.gz.csi: No such file or directory
ls: *.thresholds.bed.gz: No such file or directory
ls: *.thresholds.bed.gz.csi: No such file or directory