File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9586b9e4a013f552a70c96d27923d0/.command.log
Size
867 bytes
Task
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_1O-T1-TDNA-1_A23TNVYLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260504_LH00527_0081_A23TNVYLT4__c86dea0e--20260506-131012/alignments/recalibrated/1029_1O-T1-TDNA-1_A23TNVYLT4_1/1029_1O-T1-TDNA-1_A23TNVYLT4_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9586b9e4a013f552a70c96d27923d0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9586b9e4a013f552a70c96d27923d0/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260504_LH00527_0081_A23TNVYLT4__c86dea0e--20260506-131012/alignments/recalibrated/1029_1O-T1-TDNA-1_A23TNVYLT4_1/1029_1O-T1-TDNA-1_A23TNVYLT4_1.recalibrated.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_1O-T1-TDNA-1_A23TNVYLT4_1.recalibrated.bam.bai