.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_QZF-T1-TDNA-1_A23MCVNLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/2ba279b5ea2ddd65786a127109ee5c/.command.log
Size: 872 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (1029_QZF-T1-TDNA-1_A23MCVNLT4_1)
Attempt

Content

  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260327_LH00519_0078_A23MCVNLT4__0ce77ad5--20260331-121019/alignments/recalibrated/1029_QZF-T1-TDNA-1_A23MCVNLT4_1/1029_QZF-T1-TDNA-1_A23MCVNLT4_1.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260327_LH00519_0078_A23MCVNLT4__0ce77ad5--20260331-121019/alignments/recalibrated/1029_QZF-T1-TDNA-1_A23MCVNLT4_1/1029_QZF-T1-TDNA-1_A23MCVNLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/2ba279b5ea2ddd65786a127109ee5c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/2ba279b5ea2ddd65786a127109ee5c/.command.run
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 1029_QZF-T1-TDNA-1_A23MCVNLT4_1.recalibrated.bam.bai