File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/d0f39d368982e64d4a88b467a484a6/.command.log
Size
926 bytes
Task
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (1136_5Z2-T1-TDNA-1_A23MYM7LT4_11)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00995_0017_A23MYM7LT4__5b7749bb--20260306-133014/alignments/recalibrated/1136_5Z2-T1-TDNA-1_A23MYM7LT4_11/1136_5Z2-T1-TDNA-1_A23MYM7LT4_11.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/d0f39d368982e64d4a88b467a484a6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/d0f39d368982e64d4a88b467a484a6/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260304_LH00995_0017_A23MYM7LT4__5b7749bb--20260306-133014/alignments/recalibrated/1136_5Z2-T1-TDNA-1_A23MYM7LT4_11/1136_5Z2-T1-TDNA-1_A23MYM7LT4_11.recalibrated.bam.bai
==> STAGING COMPLETE (5 inputs)